data_6KFL # _entry.id 6KFL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6KFL pdb_00006kfl 10.2210/pdb6kfl/pdb WWPDB D_1300012680 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6KFL _pdbx_database_status.recvd_initial_deposition_date 2019-07-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Y.S.' 1 0000-0002-4948-6449 'Parkinson, G.N.' 2 ? 'Wei, D.G.' 3 0000-0001-7776-7320 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of a two-quartet DNA G-quadruplex complexed with the porphyrin TMPyP4' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.S.' 1 0000-0002-4948-6449 primary 'Parkinson, G.N.' 2 ? primary 'Wei, D.G.' 3 0000-0001-7776-7320 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 113.150 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6KFL _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.152 _cell.length_a_esd ? _cell.length_b 47.192 _cell.length_b_esd ? _cell.length_c 38.133 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*GP*GP*CP*TP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3') ; 4362.816 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' 678.826 1 ? ? ? ? 4 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 5 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DT)(DC)(DG)(DG)(DC)(DG)(DG)(DC)(DG)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can GGCTCGGCGGCGGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DG n 1 11 DC n 1 12 DG n 1 13 DG n 1 14 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 14 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudorabies virus Ea' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 101947 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6KFL _struct_ref.pdbx_db_accession 6KFL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6KFL A 1 ? 14 ? 6KFL 1 ? 14 ? 1 14 2 1 6KFL B 1 ? 14 ? 6KFL 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 POH non-polymer . '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' TMPyP4 'C44 H38 N8 4' 678.826 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6KFL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'KCaco,Nacaco,KCl,NaCl,hexammine cobalt(III) chloride,MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-04-07 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03923 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.03923 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6KFL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.92 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5961 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.22 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.1 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.81 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.92 _reflns_shell.d_res_low 1.989 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 487 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.354 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 92.960 _refine.B_iso_mean 34.7276 _refine.B_iso_min 7.380 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6KFL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9200 _refine.ls_d_res_low 35.0630 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5854 _refine.ls_number_reflns_R_free 331 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.2400 _refine.ls_percent_reflns_R_free 5.6500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2207 _refine.ls_R_factor_R_free 0.2617 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2181 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6JJF _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.0600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9200 _refine_hist.d_res_low 35.0630 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 697 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 28 _refine_hist.pdbx_B_iso_mean_ligand 55.04 _refine_hist.pdbx_B_iso_mean_solvent 34.27 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 580 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9197 2.4186 2848 . 163 2685 94.0000 . . . 0.3024 0.0000 0.2230 . . . . . . 2 . . . 'X-RAY DIFFRACTION' 2.4186 35.0691 3006 . 168 2838 99.0000 . . . 0.2468 0.0000 0.2161 . . . . . . 2 . . . # _struct.entry_id 6KFL _struct.title 'Crystal structure of a two-quartet DNA G-quadruplex complexed with the porphyrin TMPyP4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6KFL _struct_keywords.text 'G-quadruplex, two-quartet, complex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1 A K 101 1_555 ? ? ? ? ? ? ? 2.967 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? A DG 1 A K 102 1_555 ? ? ? ? ? ? ? 2.808 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 101 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 6 A K 101 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc5 metalc ? ? A DG 7 O6 ? ? ? 1_555 C K . K ? ? A DG 7 A K 101 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc6 metalc ? ? A DG 7 O6 ? ? ? 1_555 D K . K ? ? A DG 7 A K 102 1_555 ? ? ? ? ? ? ? 2.825 ? ? metalc7 metalc ? ? A DG 9 O6 ? ? ? 1_555 D K . K ? ? A DG 9 A K 102 1_555 ? ? ? ? ? ? ? 2.743 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 E K . K ? ? A DG 9 A K 103 1_555 ? ? ? ? ? ? ? 2.920 ? ? metalc9 metalc ? ? A DG 10 O6 ? ? ? 1_555 E K . K ? ? A DG 10 A K 103 1_555 ? ? ? ? ? ? ? 2.791 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 F K . K ? ? A DG 10 A K 104 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc11 metalc ? ? A DG 12 O6 ? ? ? 1_555 D K . K ? ? A DG 12 A K 102 1_555 ? ? ? ? ? ? ? 2.761 ? ? metalc12 metalc ? ? A DG 12 O6 ? ? ? 1_555 E K . K ? ? A DG 12 A K 103 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc13 metalc ? ? A DG 13 O6 ? ? ? 1_555 E K . K ? ? A DG 13 A K 103 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc14 metalc ? ? A DG 13 O6 ? ? ? 1_555 F K . K ? ? A DG 13 A K 104 1_555 ? ? ? ? ? ? ? 2.910 ? ? metalc15 metalc ? ? C K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 101 B DG 1 1_555 ? ? ? ? ? ? ? 2.879 ? ? metalc16 metalc ? ? C K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 101 B DG 2 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc17 metalc ? ? C K . K ? ? ? 1_555 B DG 6 O6 ? ? A K 101 B DG 6 1_555 ? ? ? ? ? ? ? 2.646 ? ? metalc18 metalc ? ? C K . K ? ? ? 1_555 B DG 7 O6 ? ? A K 101 B DG 7 1_555 ? ? ? ? ? ? ? 2.678 ? ? metalc19 metalc ? ? D K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 102 B DG 1 1_555 ? ? ? ? ? ? ? 2.898 ? ? metalc20 metalc ? ? D K . K ? ? ? 1_555 B DG 7 O6 ? ? A K 102 B DG 7 1_555 ? ? ? ? ? ? ? 2.829 ? ? metalc21 metalc ? ? D K . K ? ? ? 1_555 B DG 9 O6 ? ? A K 102 B DG 9 1_555 ? ? ? ? ? ? ? 2.821 ? ? metalc22 metalc ? ? D K . K ? ? ? 1_555 B DG 12 O6 ? ? A K 102 B DG 12 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc23 metalc ? ? E K . K ? ? ? 1_555 B DG 9 O6 ? ? A K 103 B DG 9 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc24 metalc ? ? E K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 103 B DG 10 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc25 metalc ? ? E K . K ? ? ? 1_555 B DG 12 O6 ? ? A K 103 B DG 12 1_555 ? ? ? ? ? ? ? 2.742 ? ? metalc26 metalc ? ? E K . K ? ? ? 1_555 B DG 13 O6 ? ? A K 103 B DG 13 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc27 metalc ? ? F K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 104 B DG 10 1_555 ? ? ? ? ? ? ? 2.966 ? ? metalc28 metalc ? ? F K . K ? ? ? 1_555 B DG 13 O6 ? ? A K 104 B DG 13 1_555 ? ? ? ? ? ? ? 2.820 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 7 N2 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 7 N1 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 7 O6 ? ? A DG 1 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 7 N7 ? ? A DG 1 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 6 N2 ? ? A DG 2 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 6 N1 ? ? A DG 2 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DC 8 O2 ? ? A DC 3 A DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DC 8 N4 ? ? A DC 3 A DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? A DT 4 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DT 4 B DG 6 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DC 5 O2 ? ? A DC 5 B DC 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DC 5 N4 ? ? A DC 5 B DC 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 6 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 6 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 7 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 7 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 7 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 9 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 9 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 12 N2 ? ? A DG 9 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 12 N1 ? ? A DG 9 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 10 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 N7 ? ? ? 1_555 B DG 13 N2 ? ? A DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DG 13 N1 ? ? A DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DG 9 O6 ? ? A DG 12 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 9 N7 ? ? A DG 12 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DG 10 O6 ? ? A DG 13 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DG 10 N7 ? ? A DG 13 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 7 N2 ? ? B DG 1 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 7 N1 ? ? B DG 1 B DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 6 O6 ? ? B DG 2 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 6 N7 ? ? B DG 2 B DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DG 12 O6 ? ? B DG 9 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DG 12 N7 ? ? B DG 9 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DG 13 O6 ? ? B DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DG 13 N7 ? ? B DG 10 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A K 102 ? 10 'binding site for residue K A 102' AC3 Software A K 103 ? 10 'binding site for residue K A 103' AC4 Software A K 104 ? 9 'binding site for residue K A 104' AC5 Software A POH 105 ? 6 'binding site for residue POH A 105' AC6 Software A NCO 106 ? 5 'binding site for residue NCO A 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 9 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 9 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC1 9 DG A 7 ? DG A 7 . ? 1_555 ? 5 AC1 9 K D . ? K A 102 . ? 1_555 ? 6 AC1 9 DG B 1 ? DG B 1 . ? 1_555 ? 7 AC1 9 DG B 2 ? DG B 2 . ? 1_555 ? 8 AC1 9 DG B 6 ? DG B 6 . ? 1_555 ? 9 AC1 9 DG B 7 ? DG B 7 . ? 1_555 ? 10 AC2 10 DG A 1 ? DG A 1 . ? 1_555 ? 11 AC2 10 DG A 7 ? DG A 7 . ? 1_555 ? 12 AC2 10 DG A 9 ? DG A 9 . ? 1_555 ? 13 AC2 10 DG A 12 ? DG A 12 . ? 1_555 ? 14 AC2 10 K C . ? K A 101 . ? 1_555 ? 15 AC2 10 K E . ? K A 103 . ? 1_555 ? 16 AC2 10 DG B 1 ? DG B 1 . ? 1_555 ? 17 AC2 10 DG B 7 ? DG B 7 . ? 1_555 ? 18 AC2 10 DG B 9 ? DG B 9 . ? 1_555 ? 19 AC2 10 DG B 12 ? DG B 12 . ? 1_555 ? 20 AC3 10 DG A 9 ? DG A 9 . ? 1_555 ? 21 AC3 10 DG A 10 ? DG A 10 . ? 1_555 ? 22 AC3 10 DG A 12 ? DG A 12 . ? 1_555 ? 23 AC3 10 DG A 13 ? DG A 13 . ? 1_555 ? 24 AC3 10 K D . ? K A 102 . ? 1_555 ? 25 AC3 10 K F . ? K A 104 . ? 1_555 ? 26 AC3 10 DG B 9 ? DG B 9 . ? 1_555 ? 27 AC3 10 DG B 10 ? DG B 10 . ? 1_555 ? 28 AC3 10 DG B 12 ? DG B 12 . ? 1_555 ? 29 AC3 10 DG B 13 ? DG B 13 . ? 1_555 ? 30 AC4 9 DG A 10 ? DG A 10 . ? 1_555 ? 31 AC4 9 DG A 13 ? DG A 13 . ? 1_555 ? 32 AC4 9 DA A 14 ? DA A 14 . ? 2_656 ? 33 AC4 9 DA A 14 ? DA A 14 . ? 1_555 ? 34 AC4 9 K E . ? K A 103 . ? 1_555 ? 35 AC4 9 DG B 10 ? DG B 10 . ? 1_555 ? 36 AC4 9 DG B 13 ? DG B 13 . ? 1_555 ? 37 AC4 9 DA B 14 ? DA B 14 . ? 2_656 ? 38 AC4 9 DA B 14 ? DA B 14 . ? 1_555 ? 39 AC5 6 DC A 3 ? DC A 3 . ? 1_555 ? 40 AC5 6 DC A 3 ? DC A 3 . ? 2_655 ? 41 AC5 6 DC A 8 ? DC A 8 . ? 1_555 ? 42 AC5 6 DC A 8 ? DC A 8 . ? 2_655 ? 43 AC5 6 DG A 9 ? DG A 9 . ? 1_555 ? 44 AC5 6 HOH I . ? HOH A 212 . ? 2_655 ? 45 AC6 5 DA A 14 ? DA A 14 . ? 1_555 ? 46 AC6 5 HOH I . ? HOH A 211 . ? 1_555 ? 47 AC6 5 HOH I . ? HOH A 213 . ? 1_555 ? 48 AC6 5 DC B 8 ? DC B 8 . ? 1_555 ? 49 AC6 5 DC B 11 ? DC B 11 . ? 4_556 ? # _atom_sites.entry_id 6KFL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.020768 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008878 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021190 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028520 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CO K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DA 14 14 14 DA DA A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n B 1 11 DC 11 11 11 DC DC B . n B 1 12 DG 12 12 12 DG DG B . n B 1 13 DG 13 13 13 DG DG B . n B 1 14 DA 14 14 14 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 1 K K A . D 2 K 1 102 2 K K A . E 2 K 1 103 3 K K A . F 2 K 1 104 4 K K A . G 3 POH 1 105 102 POH POH A . H 4 NCO 1 106 101 NCO NCO A . I 5 HOH 1 201 52 HOH HOH A . I 5 HOH 2 202 10 HOH HOH A . I 5 HOH 3 203 18 HOH HOH A . I 5 HOH 4 204 4 HOH HOH A . I 5 HOH 5 205 24 HOH HOH A . I 5 HOH 6 206 33 HOH HOH A . I 5 HOH 7 207 23 HOH HOH A . I 5 HOH 8 208 55 HOH HOH A . I 5 HOH 9 209 19 HOH HOH A . I 5 HOH 10 210 50 HOH HOH A . I 5 HOH 11 211 54 HOH HOH A . I 5 HOH 12 212 21 HOH HOH A . I 5 HOH 13 213 26 HOH HOH A . I 5 HOH 14 214 15 HOH HOH A . I 5 HOH 15 215 11 HOH HOH A . I 5 HOH 16 216 5 HOH HOH A . I 5 HOH 17 217 38 HOH HOH A . I 5 HOH 18 218 47 HOH HOH A . I 5 HOH 19 219 46 HOH HOH A . I 5 HOH 20 220 48 HOH HOH A . J 5 HOH 1 101 17 HOH HOH B . J 5 HOH 2 102 8 HOH HOH B . J 5 HOH 3 103 27 HOH HOH B . J 5 HOH 4 104 28 HOH HOH B . J 5 HOH 5 105 16 HOH HOH B . J 5 HOH 6 106 30 HOH HOH B . J 5 HOH 7 107 14 HOH HOH B . J 5 HOH 8 108 9 HOH HOH B . J 5 HOH 9 109 22 HOH HOH B . J 5 HOH 10 110 41 HOH HOH B . J 5 HOH 11 111 12 HOH HOH B . J 5 HOH 12 112 2 HOH HOH B . J 5 HOH 13 113 13 HOH HOH B . J 5 HOH 14 114 25 HOH HOH B . J 5 HOH 15 115 1 HOH HOH B . J 5 HOH 16 116 20 HOH HOH B . J 5 HOH 17 117 3 HOH HOH B . J 5 HOH 18 118 7 HOH HOH B . J 5 HOH 19 119 44 HOH HOH B . J 5 HOH 20 120 6 HOH HOH B . J 5 HOH 21 121 31 HOH HOH B . J 5 HOH 22 122 32 HOH HOH B . J 5 HOH 23 123 35 HOH HOH B . J 5 HOH 24 124 37 HOH HOH B . J 5 HOH 25 125 40 HOH HOH B . J 5 HOH 26 126 43 HOH HOH B . J 5 HOH 27 127 42 HOH HOH B . J 5 HOH 28 128 29 HOH HOH B . J 5 HOH 29 129 34 HOH HOH B . J 5 HOH 30 130 49 HOH HOH B . J 5 HOH 31 131 51 HOH HOH B . J 5 HOH 32 132 36 HOH HOH B . J 5 HOH 33 133 53 HOH HOH B . J 5 HOH 34 134 56 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1520 ? 1 MORE -1 ? 1 'SSA (A^2)' 4610 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A POH 105 ? G POH . 2 1 B HOH 106 ? J HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 67.6 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 96.7 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 75.8 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 69.5 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 118.0 ? 6 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 67.1 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 104.2 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 167.0 ? 9 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 116.1 ? 10 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 65.6 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 169.6 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 119.3 ? 13 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 78.5 ? 14 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 100.1 ? 15 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 70.3 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 119.8 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 77.0 ? 18 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 120.1 ? 19 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 165.0 ? 20 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 99.8 ? 21 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 6 ? B DG 6 ? 1_555 70.3 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 66.1 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 96.7 ? 24 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 162.9 ? 25 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 104.6 ? 26 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 70.4 ? 27 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 118.3 ? 28 O6 ? B DG 6 ? B DG 6 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 71.8 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 72.5 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 80.0 ? 31 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 90.6 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 87.2 ? 33 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 154.9 ? 34 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 71.0 ? 35 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 107.9 ? 36 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 66.0 ? 37 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 150.4 ? 38 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 136.4 ? 39 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 66.5 ? 40 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 102.1 ? 41 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 137.9 ? 42 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 82.3 ? 43 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 7 ? B DG 7 ? 1_555 68.1 ? 44 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 146.6 ? 45 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 136.3 ? 46 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 110.4 ? 47 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 67.9 ? 48 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 79.2 ? 49 O6 ? B DG 7 ? B DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 87.7 ? 50 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 142.1 ? 51 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 84.1 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 70.7 ? 53 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 104.6 ? 54 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 88.3 ? 55 O6 ? B DG 7 ? B DG 7 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 149.7 ? 56 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 68.7 ? 57 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 83.1 ? 58 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 68.3 ? 59 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 90.8 ? 60 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 139.9 ? 61 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 70.5 ? 62 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 82.1 ? 63 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 103.9 ? 64 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 151.0 ? 65 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 66.9 ? 66 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 87.5 ? 67 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 151.5 ? 68 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 109.3 ? 69 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 134.5 ? 70 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 68.1 ? 71 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 77.9 ? 72 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 68.0 ? 73 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 138.8 ? 74 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 104.1 ? 75 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 148.6 ? 76 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 67.7 ? 77 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 87.3 ? 78 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 90.1 ? 79 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 70.3 ? 80 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 153.2 ? 81 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 107.7 ? 82 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 136.6 ? 83 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 71.3 ? 84 O6 ? B DG 12 ? B DG 12 ? 1_555 K ? E K . ? A K 103 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 80.8 ? 85 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 68.0 ? 86 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 104.6 ? 87 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 65.5 ? 88 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 68.1 ? 89 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 102.9 ? 90 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? F K . ? A K 104 ? 1_555 O6 ? B DG 13 ? B DG 13 ? 1_555 68.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-08 2 'Structure model' 1 1 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_dist_value' 4 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 5 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 12.5944 _pdbx_refine_tls.origin_y -7.8122 _pdbx_refine_tls.origin_z 9.6630 _pdbx_refine_tls.T[1][1] 0.1625 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0239 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0135 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.1842 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0010 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.1162 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.0864 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.0220 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.2574 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 2.9184 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.4268 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.9253 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0371 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.6077 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0770 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.4864 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0778 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.1598 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0011 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0803 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0469 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? A 14 ? all 2 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? B 14 ? all 3 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? C 4 ? all 4 'X-RAY DIFFRACTION' 1 ? ? P 102 ? ? P 102 ? all 5 'X-RAY DIFFRACTION' 1 ? ? E 101 ? ? E 101 ? all 6 'X-RAY DIFFRACTION' 1 ? ? S 1 ? ? S 56 ? all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6KFL _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.15 108.30 1.85 0.30 N 2 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 112.12 108.30 3.82 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 K K K N N 147 NCO CO CO N N 148 NCO N1 N N N 149 NCO N2 N N N 150 NCO N3 N N N 151 NCO N4 N N N 152 NCO N5 N N N 153 NCO N6 N N N 154 NCO HN11 H N N 155 NCO HN12 H N N 156 NCO HN13 H N N 157 NCO HN21 H N N 158 NCO HN22 H N N 159 NCO HN23 H N N 160 NCO HN31 H N N 161 NCO HN32 H N N 162 NCO HN33 H N N 163 NCO HN41 H N N 164 NCO HN42 H N N 165 NCO HN43 H N N 166 NCO HN51 H N N 167 NCO HN52 H N N 168 NCO HN53 H N N 169 NCO HN61 H N N 170 NCO HN62 H N N 171 NCO HN63 H N N 172 POH CX3 C Y N 173 POH C2A C Y N 174 POH C71 C Y N 175 POH C81 C Y N 176 POH C91 C Y N 177 POH CXN C N N 178 POH C3A C Y N 179 POH C4A C Y N 180 POH C1A C Y N 181 POH CXD C Y N 182 POH NXT N Y N 183 POH NA N Y N 184 POH NB N Y N 185 POH NC N Y N 186 POH ND N Y N 187 POH CHB C Y N 188 POH C1B C Y N 189 POH CX4 C Y N 190 POH C2B C Y N 191 POH C72 C Y N 192 POH C82 C Y N 193 POH C92 C Y N 194 POH CXO C N N 195 POH C3B C Y N 196 POH C4B C Y N 197 POH CXE C Y N 198 POH NXU N Y N 199 POH CHC C Y N 200 POH C1C C Y N 201 POH CX5 C Y N 202 POH C2C C Y N 203 POH C73 C Y N 204 POH C83 C Y N 205 POH C93 C Y N 206 POH CXP C N N 207 POH C3C C Y N 208 POH C4C C Y N 209 POH CXF C Y N 210 POH NXV N Y N 211 POH CHD C Y N 212 POH C1D C Y N 213 POH CX6 C Y N 214 POH C2D C Y N 215 POH C74 C Y N 216 POH C84 C Y N 217 POH C94 C Y N 218 POH CXQ C N N 219 POH C3D C Y N 220 POH C4D C Y N 221 POH CXG C Y N 222 POH CHA C Y N 223 POH NXW N Y N 224 POH H51 H N N 225 POH H11 H N N 226 POH H31 H N N 227 POH H41 H N N 228 POH H811 H N N 229 POH H821 H N N 230 POH H831 H N N 231 POH H21 H N N 232 POH H61 H N N 233 POH H71 H N N 234 POH H73 H N N 235 POH H52 H N N 236 POH H12 H N N 237 POH H32 H N N 238 POH H42 H N N 239 POH H812 H N N 240 POH H822 H N N 241 POH H832 H N N 242 POH H22 H N N 243 POH H62 H N N 244 POH H53 H N N 245 POH H13 H N N 246 POH H33 H N N 247 POH H43 H N N 248 POH H813 H N N 249 POH H823 H N N 250 POH H833 H N N 251 POH H23 H N N 252 POH H63 H N N 253 POH H54 H N N 254 POH H14 H N N 255 POH H34 H N N 256 POH H44 H N N 257 POH H814 H N N 258 POH H824 H N N 259 POH H834 H N N 260 POH H24 H N N 261 POH H64 H N N 262 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NCO CO N1 sing N N 152 NCO CO N2 sing N N 153 NCO CO N3 sing N N 154 NCO CO N4 sing N N 155 NCO CO N5 sing N N 156 NCO CO N6 sing N N 157 NCO N1 HN11 sing N N 158 NCO N1 HN12 sing N N 159 NCO N1 HN13 sing N N 160 NCO N2 HN21 sing N N 161 NCO N2 HN22 sing N N 162 NCO N2 HN23 sing N N 163 NCO N3 HN31 sing N N 164 NCO N3 HN32 sing N N 165 NCO N3 HN33 sing N N 166 NCO N4 HN41 sing N N 167 NCO N4 HN42 sing N N 168 NCO N4 HN43 sing N N 169 NCO N5 HN51 sing N N 170 NCO N5 HN52 sing N N 171 NCO N5 HN53 sing N N 172 NCO N6 HN61 sing N N 173 NCO N6 HN62 sing N N 174 NCO N6 HN63 sing N N 175 POH CX3 CXD doub Y N 176 POH CX3 NXT sing Y N 177 POH C2A C3A doub Y N 178 POH C2A C1A sing Y N 179 POH C71 C81 doub Y N 180 POH C71 CXD sing Y N 181 POH C71 CHB sing Y N 182 POH C81 C91 sing Y N 183 POH C91 NXT doub Y N 184 POH CXN NXT sing N N 185 POH C3A C4A sing Y N 186 POH C4A NA sing Y N 187 POH C4A CHB doub Y N 188 POH C1A NA sing Y N 189 POH C1A CHA doub Y N 190 POH NB C1B doub Y N 191 POH NB C4B sing Y N 192 POH NC C1C sing Y N 193 POH NC C4C sing Y N 194 POH ND C1D sing Y N 195 POH ND C4D doub Y N 196 POH CHB C1B sing Y N 197 POH C1B C2B sing Y N 198 POH CX4 CXE doub Y N 199 POH CX4 NXU sing Y N 200 POH C2B C3B doub Y N 201 POH C72 C82 doub Y N 202 POH C72 CXE sing Y N 203 POH C72 CHC sing Y N 204 POH C82 C92 sing Y N 205 POH C92 NXU doub Y N 206 POH CXO NXU sing N N 207 POH C3B C4B sing Y N 208 POH C4B CHC doub Y N 209 POH CHC C1C sing Y N 210 POH C1C C2C doub Y N 211 POH CX5 CXF doub Y N 212 POH CX5 NXV sing Y N 213 POH C2C C3C sing Y N 214 POH C73 C83 doub Y N 215 POH C73 CXF sing Y N 216 POH C73 CHD sing Y N 217 POH C83 C93 sing Y N 218 POH C93 NXV doub Y N 219 POH CXP NXV sing N N 220 POH C3C C4C doub Y N 221 POH C4C CHD sing Y N 222 POH CHD C1D doub Y N 223 POH C1D C2D sing Y N 224 POH CX6 CXG sing Y N 225 POH CX6 NXW doub Y N 226 POH C2D C3D doub Y N 227 POH C74 C84 sing Y N 228 POH C74 CXG doub Y N 229 POH C74 CHA sing Y N 230 POH C84 C94 doub Y N 231 POH C94 NXW sing Y N 232 POH CXQ NXW sing N N 233 POH C3D C4D sing Y N 234 POH C4D CHA sing Y N 235 POH CX3 H51 sing N N 236 POH C2A H11 sing N N 237 POH C81 H31 sing N N 238 POH C91 H41 sing N N 239 POH CXN H811 sing N N 240 POH CXN H821 sing N N 241 POH CXN H831 sing N N 242 POH C3A H21 sing N N 243 POH CXD H61 sing N N 244 POH NA H71 sing N N 245 POH NC H73 sing N N 246 POH CX4 H52 sing N N 247 POH C2B H12 sing N N 248 POH C82 H32 sing N N 249 POH C92 H42 sing N N 250 POH CXO H812 sing N N 251 POH CXO H822 sing N N 252 POH CXO H832 sing N N 253 POH C3B H22 sing N N 254 POH CXE H62 sing N N 255 POH CX5 H53 sing N N 256 POH C2C H13 sing N N 257 POH C83 H33 sing N N 258 POH C93 H43 sing N N 259 POH CXP H813 sing N N 260 POH CXP H823 sing N N 261 POH CXP H833 sing N N 262 POH C3C H23 sing N N 263 POH CXF H63 sing N N 264 POH CX6 H54 sing N N 265 POH C2D H14 sing N N 266 POH C84 H34 sing N N 267 POH C94 H44 sing N N 268 POH CXQ H814 sing N N 269 POH CXQ H824 sing N N 270 POH CXQ H834 sing N N 271 POH C3D H24 sing N N 272 POH CXG H64 sing N N 273 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6KFL 'double helix' 6KFL 'z-form double helix' 6KFL 'parallel strands' 6KFL 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 A DC 8 1_555 1.936 1.431 0.098 13.229 6.528 174.979 1 A_DC3:DC8_A A 3 ? A 8 ? 15 2 1 A DC 5 1_555 B DC 5 1_555 -1.930 1.719 -0.028 9.759 4.848 -170.972 2 A_DC5:DC5_B A 5 ? B 5 ? 15 2 1 A DG 6 1_555 B DG 2 1_555 -1.855 3.373 0.242 -3.115 -3.533 85.523 3 A_DG6:DG2_B A 6 ? B 2 ? 6 3 1 B DG 13 1_555 A DG 10 1_555 -1.558 3.526 -0.075 0.330 6.806 91.327 4 B_DG13:DG10_A B 13 ? A 10 ? 6 3 1 A DG 12 1_555 A DG 9 1_555 1.523 -3.623 -0.014 -0.377 -1.136 -89.930 5 A_DG12:DG9_A A 12 ? A 9 ? 6 3 1 A DG 13 1_555 B DG 10 1_555 -1.563 3.473 0.012 -1.322 5.556 91.512 6 A_DG13:DG10_B A 13 ? B 10 ? 6 3 1 B DG 12 1_555 B DG 9 1_555 1.465 -3.568 -0.024 -2.831 -3.977 -89.331 7 B_DG12:DG9_B B 12 ? B 9 ? 6 3 1 B DG 1 1_555 B DG 7 1_555 1.615 -3.425 -0.231 3.524 0.699 -88.758 8 B_DG1:DG7_B B 1 ? B 7 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 5 1_555 B DC 5 1_555 A DG 6 1_555 B DG 2 1_555 1.568 2.244 3.146 -4.162 10.714 -119.926 -1.390 0.867 3.052 -6.181 -2.401 -120.259 1 AA_DC5DG6:DG2DC5_BB A 5 ? B 5 ? A 6 ? B 2 ? 1 B DG 13 1_555 A DG 10 1_555 A DG 12 1_555 A DG 9 1_555 0.663 -1.363 3.533 -3.635 0.120 -53.672 1.499 0.486 3.571 -0.132 -4.021 -53.786 2 BA_DG13DG12:DG9DG10_AA B 13 ? A 10 ? A 12 ? A 9 ? 1 A DG 13 1_555 B DG 10 1_555 B DG 12 1_555 B DG 9 1_555 0.821 -1.528 3.375 -2.588 0.076 -53.259 1.698 0.745 3.410 -0.085 -2.885 -53.317 3 AB_DG13DG12:DG9DG10_BB A 13 ? B 10 ? B 12 ? B 9 ? 1 B DG 12 1_555 B DG 9 1_555 B DG 1 1_555 B DG 7 1_555 -0.448 1.554 3.397 -2.126 1.053 52.647 1.679 0.360 3.439 1.187 2.396 52.697 4 BB_DG12DG1:DG7DG9_BB B 12 ? B 9 ? B 1 ? B 7 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31672558 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 K ? ? K ? ? 'SUBJECT OF INVESTIGATION' ? 2 NCO ? ? NCO ? ? 'SUBJECT OF INVESTIGATION' ? 3 POH ? ? POH ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' POH 4 'COBALT HEXAMMINE(III)' NCO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JJF _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details dimer #