HEADER METAL BINDING PROTEIN 08-JUL-19 6KFS TITLE STRUCTURE OF CCM RELATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LCIB_C_CA DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEODACTYLUM TRICORNUTUM; SOURCE 3 ORGANISM_COMMON: DIATOM; SOURCE 4 ORGANISM_TAXID: 2850; SOURCE 5 GENE: PT43233; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBONIC ANHYDRASE, PROTON SHUTTLE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.JIN,Y.G.GAO REVDAT 3 27-MAR-24 6KFS 1 REMARK REVDAT 2 22-JUL-20 6KFS 1 JRNL REVDAT 1 15-JUL-20 6KFS 0 JRNL AUTH S.JIN,D.VULLO,S.BUA,A.NOCENTINI,C.T.SUPURAN,Y.G.GAO JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF NOVEL JRNL TITL 2 CARBONIC ANHYDRASES FROM PHAEODACTYLUM TRICORNUTUM. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 676 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 32627740 JRNL DOI 10.1107/S2059798320007202 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 93028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7100 - 3.7200 1.00 3107 177 0.1543 0.1762 REMARK 3 2 3.7200 - 2.9600 1.00 3008 160 0.1445 0.1748 REMARK 3 3 2.9600 - 2.5800 1.00 2985 164 0.1569 0.1849 REMARK 3 4 2.5800 - 2.3500 1.00 2994 144 0.1588 0.1948 REMARK 3 5 2.3500 - 2.1800 1.00 2959 164 0.1561 0.1707 REMARK 3 6 2.1800 - 2.0500 1.00 2935 177 0.1617 0.1830 REMARK 3 7 2.0500 - 1.9500 1.00 2955 152 0.1696 0.1643 REMARK 3 8 1.9500 - 1.8600 1.00 2946 137 0.1737 0.1903 REMARK 3 9 1.8600 - 1.7900 1.00 2994 135 0.1846 0.1804 REMARK 3 10 1.7900 - 1.7300 1.00 2959 142 0.1888 0.1787 REMARK 3 11 1.7300 - 1.6800 1.00 2943 157 0.1947 0.2209 REMARK 3 12 1.6800 - 1.6300 1.00 2904 176 0.1909 0.1952 REMARK 3 13 1.6300 - 1.5900 1.00 2920 172 0.1969 0.2164 REMARK 3 14 1.5900 - 1.5500 1.00 2941 156 0.1991 0.2317 REMARK 3 15 1.5500 - 1.5100 1.00 2922 152 0.2014 0.2114 REMARK 3 16 1.5100 - 1.4800 1.00 2938 158 0.2034 0.2305 REMARK 3 17 1.4800 - 1.4500 1.00 2936 156 0.2051 0.1890 REMARK 3 18 1.4500 - 1.4200 1.00 2917 162 0.2180 0.2197 REMARK 3 19 1.4200 - 1.4000 1.00 2949 142 0.2158 0.2256 REMARK 3 20 1.4000 - 1.3700 1.00 2909 155 0.2200 0.2640 REMARK 3 21 1.3700 - 1.3500 1.00 2938 144 0.2336 0.2574 REMARK 3 22 1.3500 - 1.3300 1.00 2924 140 0.2385 0.2103 REMARK 3 23 1.3300 - 1.3100 1.00 2944 158 0.2576 0.2866 REMARK 3 24 1.3100 - 1.2900 1.00 2907 151 0.2976 0.2925 REMARK 3 25 1.2900 - 1.2800 1.00 2933 152 0.2731 0.3032 REMARK 3 26 1.2800 - 1.2600 1.00 2922 166 0.2466 0.2778 REMARK 3 27 1.2600 - 1.2400 1.00 2905 150 0.2425 0.2547 REMARK 3 28 1.2400 - 1.2300 1.00 2900 160 0.2497 0.2461 REMARK 3 29 1.2300 - 1.2100 1.00 2918 161 0.2539 0.2844 REMARK 3 30 1.2100 - 1.2000 1.00 2938 158 0.2754 0.2801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.135 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.984 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1874 REMARK 3 ANGLE : 0.976 2541 REMARK 3 CHIRALITY : 0.078 279 REMARK 3 PLANARITY : 0.007 343 REMARK 3 DIHEDRAL : 13.696 681 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)SO4, 0.1M BIS-TRIS PH 5.5, REMARK 280 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.68150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.95158 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.27800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.68150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.95158 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.27800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.68150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.95158 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.27800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.68150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.95158 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.27800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.68150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.95158 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.27800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.68150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.95158 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.27800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.90315 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.55600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.90315 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.55600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.90315 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.55600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.90315 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.55600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.90315 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.55600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.90315 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.55600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 177.83400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 799 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 GLN A 0 REMARK 465 TYR A 249 REMARK 465 GLU A 250 REMARK 465 LYS A 251 REMARK 465 ARG A 252 REMARK 465 ALA A 253 REMARK 465 LEU A 254 REMARK 465 PHE A 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 417 O HOH A 515 1.85 REMARK 500 O GLN A 176 O HOH A 401 1.94 REMARK 500 O HOH A 751 O HOH A 766 1.95 REMARK 500 O HOH A 637 O HOH A 639 1.98 REMARK 500 O HOH A 789 O HOH A 798 2.00 REMARK 500 O HOH A 670 O HOH A 702 2.01 REMARK 500 O HOH A 597 O HOH A 709 2.02 REMARK 500 O HOH A 455 O HOH A 656 2.03 REMARK 500 O HOH A 628 O HOH A 788 2.05 REMARK 500 O HOH A 455 O HOH A 620 2.06 REMARK 500 O HOH A 705 O HOH A 738 2.10 REMARK 500 O HOH A 482 O HOH A 684 2.10 REMARK 500 O HOH A 646 O HOH A 663 2.11 REMARK 500 O HOH A 670 O HOH A 757 2.11 REMARK 500 O HOH A 725 O HOH A 768 2.14 REMARK 500 O HOH A 500 O HOH A 643 2.14 REMARK 500 OD1 ASN A 163 O HOH A 402 2.17 REMARK 500 O HOH A 672 O HOH A 685 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 765 O HOH A 801 2655 1.96 REMARK 500 O HOH A 626 O HOH A 713 4556 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 -177.63 75.70 REMARK 500 CYS A 124 103.21 -160.31 REMARK 500 ASP A 155 36.61 -152.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 795 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 800 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 6.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 HIS A 101 NE2 105.5 REMARK 620 3 CYS A 125 SG 115.9 96.9 REMARK 620 4 HOH A 543 O 117.7 102.5 114.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 DBREF1 6KFS A -1 255 UNP A0A173LZ50_PHATR DBREF2 6KFS A A0A173LZ50 261 517 SEQADV 6KFS MET A -11 UNP A0A173LZ5 INITIATING METHIONINE SEQADV 6KFS GLY A -10 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS SER A -9 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS SER A -8 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS HIS A -7 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS HIS A -6 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS HIS A -5 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS HIS A -4 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS HIS A -3 UNP A0A173LZ5 EXPRESSION TAG SEQADV 6KFS HIS A -2 UNP A0A173LZ5 EXPRESSION TAG SEQRES 1 A 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN PHE SEQRES 2 A 267 GLU THR THR MET ALA LYS VAL GLN GLN ALA PHE PRO GLY SEQRES 3 A 267 ALA ALA THR ASN ASP GLN LEU VAL ALA LYS THR LYS SER SEQRES 4 A 267 ALA LEU SER ARG PHE GLY PHE GLY SER ASN SER LEU VAL SEQRES 5 A 267 ALA THR SER PHE CYS SER ASP GLU VAL ASN ARG PRO LEU SEQRES 6 A 267 GLU THR ASP PHE ALA LYS GLU PHE LYS ASP THR PHE SER SEQRES 7 A 267 LEU GLY GLY LEU ALA GLY PHE PRO PHE SER GLY VAL THR SEQRES 8 A 267 GLY PHE GLY ALA MET ALA LYS HIS ILE PRO ASP GLY GLY SEQRES 9 A 267 SER CYS LEU VAL VAL TYR GLY PRO HIS VAL GLY VAL ASP SEQRES 10 A 267 LEU ASP GLY ASN VAL GLY THR VAL ASN ARG ARG GLY ARG SEQRES 11 A 267 GLU LYS GLY GLY THR CYS CYS GLY SER ALA VAL ALA ALA SEQRES 12 A 267 ALA GLY TYR ILE SER LYS VAL PHE ASN GLY GLU ALA ASP SEQRES 13 A 267 PRO ALA PRO ALA VAL PRO GLU SER SER MET ASP ALA GLN SEQRES 14 A 267 GLN LEU TYR VAL GLY ASN MET LEU LEU PRO TYR ALA GLU SEQRES 15 A 267 ARG ILE GLY ASN ALA GLN ASP ALA MET VAL GLU LEU PRO SEQRES 16 A 267 TYR ALA THR TYR GLU PRO LEU ASP ASP LEU MET GLN LYS SEQRES 17 A 267 ILE VAL ALA LYS GLY CYS GLY LYS VAL GLY GLY ASP GLY SEQRES 18 A 267 LYS ILE ALA LEU LEU GLY GLY LEU GLN ILE ASN THR PRO SEQRES 19 A 267 ALA GLY CYS PRO ASP TYR PHE LEU PRO LEU ARG PHE GLU SEQRES 20 A 267 VAL ARG ASP ASN GLN ASN ASN VAL LEU ASP ASN LEU LEU SEQRES 21 A 267 TYR GLU LYS ARG ALA LEU PHE HET ZN A 301 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *401(H2 O) HELIX 1 AA1 PHE A 1 PHE A 12 1 12 HELIX 2 AA2 ASN A 18 ARG A 31 1 14 HELIX 3 AA3 ASP A 47 VAL A 49 5 3 HELIX 4 AA4 ASN A 50 LYS A 62 1 13 HELIX 5 AA5 GLY A 69 PHE A 73 5 5 HELIX 6 AA6 SER A 76 HIS A 87 1 12 HELIX 7 AA7 CYS A 125 ASN A 140 1 16 HELIX 8 AA8 ASP A 155 LEU A 166 1 12 HELIX 9 AA9 TYR A 168 ALA A 175 1 8 HELIX 10 AB1 ASP A 177 CYS A 202 1 26 HELIX 11 AB2 GLY A 203 VAL A 205 5 3 SHEET 1 AA1 4 ALA A 16 THR A 17 0 SHEET 2 AA1 4 TYR A 228 ARG A 237 -1 O PHE A 229 N ALA A 16 SHEET 3 AA1 4 ILE A 211 ASN A 220 -1 N GLY A 215 O LEU A 232 SHEET 4 AA1 4 HIS A 101 GLY A 103 1 N VAL A 102 O ASN A 220 SHEET 1 AA2 6 PHE A 65 SER A 66 0 SHEET 2 AA2 6 LEU A 39 SER A 43 1 N THR A 42 O PHE A 65 SHEET 3 AA2 6 CYS A 94 TYR A 98 1 O LEU A 95 N ALA A 41 SHEET 4 AA2 6 ILE A 211 ASN A 220 1 O ALA A 212 N CYS A 94 SHEET 5 AA2 6 TYR A 228 ARG A 237 -1 O LEU A 232 N GLY A 215 SHEET 6 AA2 6 VAL A 243 ASN A 246 -1 O LEU A 244 N VAL A 236 LINK SG CYS A 45 ZN ZN A 301 1555 1555 2.30 LINK NE2 HIS A 101 ZN ZN A 301 1555 1555 2.07 LINK SG CYS A 125 ZN ZN A 301 1555 1555 2.31 LINK ZN ZN A 301 O HOH A 543 1555 1555 1.91 CISPEP 1 CYS A 124 CYS A 125 0 7.93 SITE 1 AC1 4 CYS A 45 HIS A 101 CYS A 125 HOH A 543 CRYST1 93.363 93.363 177.834 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010711 0.006184 0.000000 0.00000 SCALE2 0.000000 0.012368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005623 0.00000