HEADER TRANSFERASE 11-JUL-19 6KGH TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 3 (PBP3) FROM TITLE 2 MYCOBACTERIUM TUERCULOSIS (APO-FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN PBPB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 3,PBP3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PBPB, FTSI, PBP3, RV2163C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS PENICILLIN-BINDING PROTEIN, NATIVE FORM, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.K.LU,A.L.ZHANG,X.LIU,L.GUDDAT,H.T.YANG,Z.H.RAO REVDAT 2 06-NOV-24 6KGH 1 LINK REVDAT 1 11-MAR-20 6KGH 0 JRNL AUTH Z.LU,H.WANG,A.ZHANG,X.LIU,W.ZHOU,C.YANG,L.GUDDAT,H.YANG, JRNL AUTH 2 C.J.SCHOFIELD,Z.RAO JRNL TITL STRUCTURES OFMYCOBACTERIUM TUBERCULOSISPENICILLIN-BINDING JRNL TITL 2 PROTEIN 3 IN COMPLEX WITH FIVEBETA-LACTAM ANTIBIOTICS REVEAL JRNL TITL 3 MECHANISM OF INACTIVATION. JRNL REF MOL.PHARMACOL. V. 97 287 2020 JRNL REFN ESSN 1521-0111 JRNL PMID 32086254 JRNL DOI 10.1124/MOL.119.118042 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0430 - 5.0775 1.00 2745 145 0.2149 0.2510 REMARK 3 2 5.0775 - 4.0308 1.00 2694 147 0.1737 0.1933 REMARK 3 3 4.0308 - 3.5215 1.00 2684 144 0.1721 0.1632 REMARK 3 4 3.5215 - 3.1996 1.00 2690 134 0.1793 0.2139 REMARK 3 5 3.1996 - 2.9703 1.00 2699 131 0.1914 0.2542 REMARK 3 6 2.9703 - 2.7952 1.00 2660 140 0.1894 0.2763 REMARK 3 7 2.7952 - 2.6552 1.00 2642 170 0.1812 0.1898 REMARK 3 8 2.6552 - 2.5396 1.00 2695 135 0.1831 0.2432 REMARK 3 9 2.5396 - 2.4419 1.00 2686 125 0.1879 0.2182 REMARK 3 10 2.4419 - 2.3576 1.00 2673 134 0.1948 0.2545 REMARK 3 11 2.3576 - 2.2839 1.00 2664 122 0.1940 0.2436 REMARK 3 12 2.2839 - 2.2186 1.00 2625 129 0.2006 0.2426 REMARK 3 13 2.2186 - 2.1602 1.00 2675 136 0.2085 0.2718 REMARK 3 14 2.1602 - 2.1080 1.00 2671 153 0.2354 0.2635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 3399 REMARK 3 ANGLE : 0.911 4617 REMARK 3 CHIRALITY : 0.063 516 REMARK 3 PLANARITY : 0.005 623 REMARK 3 DIHEDRAL : 11.498 2026 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, COCL2, MGCL2, HEPES, PH 7.4, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.85500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 940 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 943 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 118 REMARK 465 PRO A 119 REMARK 465 LEU A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 GLN A 124 REMARK 465 LEU A 125 REMARK 465 LYS A 126 REMARK 465 VAL A 127 REMARK 465 THR A 128 REMARK 465 LEU A 155 REMARK 465 THR A 156 REMARK 465 PHE A 157 REMARK 465 GLN A 158 REMARK 465 PRO A 159 REMARK 465 LYS A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 ARG A 163 REMARK 465 ARG A 164 REMARK 465 GLN A 165 REMARK 465 LEU A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 ALA A 169 REMARK 465 ARG A 170 REMARK 465 LYS A 171 REMARK 465 LYS A 172 REMARK 465 THR A 173 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ALA A 176 REMARK 465 PRO A 177 REMARK 465 ASP A 178 REMARK 465 PRO A 179 REMARK 465 GLN A 180 REMARK 465 GLN A 181 REMARK 465 ARG A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 ASP A 185 REMARK 465 ILE A 186 REMARK 465 ALA A 187 REMARK 465 GLN A 188 REMARK 465 GLU A 189 REMARK 465 VAL A 190 REMARK 465 ALA A 191 REMARK 465 GLY A 192 REMARK 465 LYS A 193 REMARK 465 LEU A 194 REMARK 465 ASN A 195 REMARK 465 ASN A 196 REMARK 465 LYS A 197 REMARK 465 PRO A 198 REMARK 465 ASP A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 VAL A 203 REMARK 465 LEU A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 LEU A 207 REMARK 465 GLN A 208 REMARK 465 SER A 209 REMARK 465 ASP A 210 REMARK 465 GLU A 211 REMARK 465 THR A 212 REMARK 465 PHE A 213 REMARK 465 VAL A 214 REMARK 465 TYR A 215 REMARK 465 LEU A 216 REMARK 465 ALA A 217 REMARK 465 ARG A 218 REMARK 465 ALA A 219 REMARK 465 VAL A 220 REMARK 465 ASP A 221 REMARK 465 PRO A 222 REMARK 465 ALA A 223 REMARK 465 VAL A 224 REMARK 465 ALA A 225 REMARK 465 SER A 226 REMARK 465 ALA A 227 REMARK 465 ILE A 228 REMARK 465 CYS A 229 REMARK 465 ALA A 230 REMARK 465 LYS A 231 REMARK 465 TYR A 232 REMARK 465 PRO A 233 REMARK 465 GLU A 234 REMARK 465 VAL A 235 REMARK 465 GLY A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 284 REMARK 465 TYR A 285 REMARK 465 ASP A 286 REMARK 465 ARG A 287 REMARK 465 GLY A 288 REMARK 465 SER A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 VAL A 292 REMARK 465 VAL A 293 REMARK 465 ILE A 294 REMARK 465 PRO A 295 REMARK 465 GLY A 296 REMARK 465 SER A 297 REMARK 465 TYR A 298 REMARK 465 ARG A 299 REMARK 465 ASN A 300 REMARK 465 SER A 667 REMARK 465 PRO A 668 REMARK 465 ASP A 669 REMARK 465 PRO A 670 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CO CO A 703 O HOH A 842 1.59 REMARK 500 NE2 HIS A 302 CO CO A 703 1.70 REMARK 500 O HOH A 938 O HOH A 947 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 938 O HOH A 948 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 424 -7.67 -55.47 REMARK 500 ASN A 519 39.82 -93.11 REMARK 500 HIS A 645 16.09 -144.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 703 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 263 NE2 REMARK 620 2 HIS A 302 CE1 121.4 REMARK 620 3 HOH A 803 O 124.7 11.0 REMARK 620 4 HOH A 805 O 132.4 11.5 10.3 REMARK 620 5 HOH A 942 O 128.1 10.7 3.8 6.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 504 O REMARK 620 2 GLN A 509 OE1 96.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 702 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 645 NE2 REMARK 620 2 HOH A 934 O 80.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 701 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 652 NE2 REMARK 620 2 HIS A 652 NE2 0.0 REMARK 620 3 HOH A 938 O 96.2 96.2 REMARK 620 4 HOH A 940 O 82.6 82.6 98.2 REMARK 620 5 HOH A 940 O 82.6 82.6 98.2 0.0 REMARK 620 6 HOH A 943 O 91.5 91.5 105.8 155.8 155.8 REMARK 620 7 HOH A 943 O 91.5 91.5 105.8 155.8 155.8 0.0 REMARK 620 8 HOH A 947 O 92.6 92.6 52.7 45.8 45.8 158.4 158.4 REMARK 620 9 HOH A 948 O 104.1 104.1 55.8 153.5 153.5 50.8 50.8 107.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 704 DBREF 6KGH A 123 679 UNP L0T911 PBPB_MYCTU 123 679 SEQADV 6KGH GLY A 118 UNP L0T911 EXPRESSION TAG SEQADV 6KGH PRO A 119 UNP L0T911 EXPRESSION TAG SEQADV 6KGH LEU A 120 UNP L0T911 EXPRESSION TAG SEQADV 6KGH GLY A 121 UNP L0T911 EXPRESSION TAG SEQADV 6KGH SER A 122 UNP L0T911 EXPRESSION TAG SEQRES 1 A 562 GLY PRO LEU GLY SER GLY GLN LEU LYS VAL THR ASP VAL SEQRES 2 A 562 GLN PRO ALA ALA ARG GLY SER ILE VAL ASP ARG ASN ASN SEQRES 3 A 562 ASP ARG LEU ALA PHE THR ILE GLU ALA ARG ALA LEU THR SEQRES 4 A 562 PHE GLN PRO LYS ARG ILE ARG ARG GLN LEU GLU GLU ALA SEQRES 5 A 562 ARG LYS LYS THR SER ALA ALA PRO ASP PRO GLN GLN ARG SEQRES 6 A 562 LEU ARG ASP ILE ALA GLN GLU VAL ALA GLY LYS LEU ASN SEQRES 7 A 562 ASN LYS PRO ASP ALA ALA ALA VAL LEU LYS LYS LEU GLN SEQRES 8 A 562 SER ASP GLU THR PHE VAL TYR LEU ALA ARG ALA VAL ASP SEQRES 9 A 562 PRO ALA VAL ALA SER ALA ILE CYS ALA LYS TYR PRO GLU SEQRES 10 A 562 VAL GLY ALA GLU ARG GLN ASP LEU ARG GLN TYR PRO GLY SEQRES 11 A 562 GLY SER LEU ALA ALA ASN VAL VAL GLY GLY ILE ASP TRP SEQRES 12 A 562 ASP GLY HIS GLY LEU LEU GLY LEU GLU ASP SER LEU ASP SEQRES 13 A 562 ALA VAL LEU ALA GLY THR ASP GLY SER VAL THR TYR ASP SEQRES 14 A 562 ARG GLY SER ASP GLY VAL VAL ILE PRO GLY SER TYR ARG SEQRES 15 A 562 ASN ARG HIS LYS ALA VAL HIS GLY SER THR VAL VAL LEU SEQRES 16 A 562 THR LEU ASP ASN ASP ILE GLN PHE TYR VAL GLN GLN GLN SEQRES 17 A 562 VAL GLN GLN ALA LYS ASN LEU SER GLY ALA HIS ASN VAL SEQRES 18 A 562 SER ALA VAL VAL LEU ASP ALA LYS THR GLY GLU VAL LEU SEQRES 19 A 562 ALA MET ALA ASN ASP ASN THR PHE ASP PRO SER GLN ASP SEQRES 20 A 562 ILE GLY ARG GLN GLY ASP LYS GLN LEU GLY ASN PRO ALA SEQRES 21 A 562 VAL SER SER PRO PHE GLU PRO GLY SER VAL ASN LYS ILE SEQRES 22 A 562 VAL ALA ALA SER ALA VAL ILE GLU HIS GLY LEU SER SER SEQRES 23 A 562 PRO ASP GLU VAL LEU GLN VAL PRO GLY SER ILE GLN MET SEQRES 24 A 562 GLY GLY VAL THR VAL HIS ASP ALA TRP GLU HIS GLY VAL SEQRES 25 A 562 MET PRO TYR THR THR THR GLY VAL PHE GLY LYS SER SER SEQRES 26 A 562 ASN VAL GLY THR LEU MET LEU SER GLN ARG VAL GLY PRO SEQRES 27 A 562 GLU ARG TYR TYR ASP MET LEU ARG LYS PHE GLY LEU GLY SEQRES 28 A 562 GLN ARG THR GLY VAL GLY LEU PRO GLY GLU SER ALA GLY SEQRES 29 A 562 LEU VAL PRO PRO ILE ASP GLN TRP SER GLY SER THR PHE SEQRES 30 A 562 ALA ASN LEU PRO ILE GLY GLN GLY LEU SER MET THR LEU SEQRES 31 A 562 LEU GLN MET THR GLY MET TYR GLN ALA ILE ALA ASN ASP SEQRES 32 A 562 GLY VAL ARG VAL PRO PRO ARG ILE ILE LYS ALA THR VAL SEQRES 33 A 562 ALA PRO ASP GLY SER ARG THR GLU GLU PRO ARG PRO ASP SEQRES 34 A 562 ASP ILE ARG VAL VAL SER ALA GLN THR ALA GLN THR VAL SEQRES 35 A 562 ARG GLN MET LEU ARG ALA VAL VAL GLN ARG ASP PRO MET SEQRES 36 A 562 GLY TYR GLN GLN GLY THR GLY PRO THR ALA GLY VAL PRO SEQRES 37 A 562 GLY TYR GLN MET ALA GLY LYS THR GLY THR ALA GLN GLN SEQRES 38 A 562 ILE ASN PRO GLY CYS GLY CYS TYR PHE ASP ASP VAL TYR SEQRES 39 A 562 TRP ILE THR PHE ALA GLY ILE ALA THR ALA ASP ASN PRO SEQRES 40 A 562 ARG TYR VAL ILE GLY ILE MET LEU ASP ASN PRO ALA ARG SEQRES 41 A 562 ASN SER ASP GLY ALA PRO GLY HIS SER ALA ALA PRO LEU SEQRES 42 A 562 PHE HIS ASN ILE ALA GLY TRP LEU MET GLN ARG GLU ASN SEQRES 43 A 562 VAL PRO LEU SER PRO ASP PRO GLY PRO PRO LEU VAL LEU SEQRES 44 A 562 GLN ALA THR HET CO A 701 1 HET CO A 702 1 HET CO A 703 1 HET NA A 704 1 HETNAM CO COBALT (II) ION HETNAM NA SODIUM ION FORMUL 2 CO 3(CO 2+) FORMUL 5 NA NA 1+ FORMUL 6 HOH *152(H2 O) HELIX 1 AA1 ALA A 251 GLY A 256 1 6 HELIX 2 AA2 GLY A 267 LEU A 272 1 6 HELIX 3 AA3 LEU A 272 GLY A 278 1 7 HELIX 4 AA4 ASP A 315 GLY A 334 1 20 HELIX 5 AA5 ASP A 364 GLN A 368 5 5 HELIX 6 AA6 ASN A 375 SER A 380 1 6 HELIX 7 AA7 PRO A 384 VAL A 387 5 4 HELIX 8 AA8 ASN A 388 HIS A 399 1 12 HELIX 9 AA9 THR A 433 SER A 441 1 9 HELIX 10 AB1 SER A 442 GLY A 454 1 13 HELIX 11 AB2 GLY A 454 PHE A 465 1 12 HELIX 12 AB3 PRO A 485 TRP A 489 5 5 HELIX 13 AB4 SER A 492 LEU A 497 1 6 HELIX 14 AB5 PRO A 498 GLY A 500 5 3 HELIX 15 AB6 THR A 506 ASN A 519 1 14 HELIX 16 AB7 SER A 552 ARG A 564 1 13 HELIX 17 AB8 ALA A 565 GLN A 568 5 4 HELIX 18 AB9 GLY A 579 GLY A 583 5 5 HELIX 19 AC1 ALA A 647 GLU A 662 1 16 SHEET 1 AA1 2 VAL A 130 GLN A 131 0 SHEET 2 AA1 2 GLY A 281 SER A 282 -1 O GLY A 281 N GLN A 131 SHEET 1 AA2 6 GLN A 240 GLN A 244 0 SHEET 2 AA2 6 ARG A 145 ALA A 152 -1 N PHE A 148 O GLN A 244 SHEET 3 AA2 6 ILE A 138 VAL A 139 -1 N ILE A 138 O LEU A 146 SHEET 4 AA2 6 THR A 309 LEU A 312 1 O LEU A 312 N VAL A 139 SHEET 5 AA2 6 ILE A 529 VAL A 533 -1 O ALA A 531 N VAL A 311 SHEET 6 AA2 6 ARG A 539 GLU A 541 -1 O THR A 540 N THR A 532 SHEET 1 AA3 2 GLY A 257 ILE A 258 0 SHEET 2 AA3 2 GLY A 264 LEU A 266 -1 O LEU A 265 N GLY A 257 SHEET 1 AA4 5 VAL A 350 ASN A 355 0 SHEET 2 AA4 5 VAL A 338 ASP A 344 -1 N VAL A 342 O ALA A 352 SHEET 3 AA4 5 TYR A 626 ASP A 633 -1 O VAL A 627 N LEU A 343 SHEET 4 AA4 5 TYR A 606C ALA A 619 -1 N ILE A 613 O LEU A 632 SHEET 5 AA4 5 ALA A 590 ILE A 599 -1 N GLN A 598 O PHE A 607 SHEET 1 AA5 2 SER A 413 MET A 416 0 SHEET 2 AA5 2 VAL A 419 HIS A 422 -1 O VAL A 419 N MET A 416 SHEET 1 AA6 2 VAL A 522 ARG A 523 0 SHEET 2 AA6 2 ILE A 548 ARG A 549 -1 O ILE A 548 N ARG A 523 SSBOND 1 CYS A 603 CYS A 605 1555 1555 2.05 LINK NE2 HIS A 263 CO CO A 703 1555 2656 2.23 LINK CE1 HIS A 302 CO CO A 703 1555 1555 2.49 LINK O SER A 504 NA NA A 704 1555 1555 3.05 LINK OE1 GLN A 509 NA NA A 704 1555 1555 2.86 LINK NE2 HIS A 645 CO CO A 702 1555 1555 2.30 LINK NE2 HIS A 652 CO CO A 701 1555 1555 2.24 LINK NE2 HIS A 652 CO CO A 701 1555 2655 2.24 LINK CO CO A 701 O HOH A 938 1555 1555 2.11 LINK CO CO A 701 O HOH A 940 1555 1555 2.67 LINK CO CO A 701 O HOH A 940 1555 2655 2.67 LINK CO CO A 701 O HOH A 943 1555 1555 2.49 LINK CO CO A 701 O HOH A 943 1555 2655 2.49 LINK CO CO A 701 O HOH A 947 1555 1555 2.63 LINK CO CO A 701 O HOH A 948 1555 2655 2.50 LINK CO CO A 702 O HOH A 934 1555 1555 2.54 LINK CO CO A 703 O HOH A 803 1555 2656 2.43 LINK CO CO A 703 O HOH A 805 1555 1555 2.03 LINK CO CO A 703 O HOH A 942 1555 2656 2.09 CISPEP 1 ALA A 619 THR A 620 0 -5.48 SITE 1 AC1 6 HIS A 652 HOH A 938 HOH A 940 HOH A 943 SITE 2 AC1 6 HOH A 947 HOH A 948 SITE 1 AC2 3 HIS A 645 HOH A 934 HOH A 950 SITE 1 AC3 6 HIS A 263 HIS A 302 HOH A 803 HOH A 805 SITE 2 AC3 6 HOH A 842 HOH A 942 SITE 1 AC4 6 LEU A 467 GLY A 468 ALA A 480 SER A 504 SITE 2 AC4 6 MET A 505 GLN A 509 CRYST1 97.710 84.220 90.500 90.00 111.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010234 0.000000 0.004052 0.00000 SCALE2 0.000000 0.011874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011884 0.00000