HEADER TRANSCRIPTION/DNA 17-JUL-19 6KI6 TITLE CRYSTAL STRUCTURE OF BCL11A IN COMPLEX WITH GAMMA-GLOBIN -115 HPFH TITLE 2 REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA/LEUKEMIA 11A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*AP*TP*AP*TP*TP*GP*GP*TP*CP*AP*AP*GP*G)-3'); COMPND 7 CHAIN: C, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*TP*CP*CP*TP*TP*GP*AP*CP*CP*AP*AP*TP*A)-3'); COMPND 11 CHAIN: D, E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL11A, CTIP1, EVI9, KIAA1809, ZNF856; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING, TRANSCRIPTION, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.D.LI,Y.YANG,Y.Y.SHI REVDAT 3 27-MAR-24 6KI6 1 REMARK REVDAT 2 20-NOV-19 6KI6 1 JRNL REVDAT 1 11-SEP-19 6KI6 0 JRNL AUTH Y.YANG,Z.XU,C.HE,B.ZHANG,Y.SHI,F.LI JRNL TITL STRUCTURAL INSIGHTS INTO THE RECOGNITION OF GAMMA-GLOBIN JRNL TITL 2 GENE PROMOTER BY BCL11A. JRNL REF CELL RES. V. 29 960 2019 JRNL REFN ISSN 1001-0602 JRNL PMID 31467406 JRNL DOI 10.1038/S41422-019-0221-0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0780 - 4.2732 1.00 3193 167 0.1896 0.2178 REMARK 3 2 4.2732 - 3.3925 1.00 3062 146 0.1845 0.2501 REMARK 3 3 3.3925 - 2.9639 1.00 3003 137 0.2185 0.2693 REMARK 3 4 2.9639 - 2.6930 1.00 2963 179 0.2585 0.3015 REMARK 3 5 2.6930 - 2.5000 0.96 2874 115 0.2549 0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 740 THROUGH 753 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6888 54.6639 -47.3663 REMARK 3 T TENSOR REMARK 3 T11: 0.4007 T22: 0.2548 REMARK 3 T33: 0.3448 T12: 0.1526 REMARK 3 T13: -0.0263 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 6.9260 L22: 1.8768 REMARK 3 L33: 3.7308 L12: 0.4950 REMARK 3 L13: -4.0882 L23: -0.0465 REMARK 3 S TENSOR REMARK 3 S11: 0.5794 S12: 1.1105 S13: 0.6959 REMARK 3 S21: -0.4952 S22: -0.0005 S23: 0.3070 REMARK 3 S31: -0.2672 S32: -1.0331 S33: 0.2564 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 754 THROUGH 770 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2554 46.4783 -42.8297 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1865 REMARK 3 T33: 0.1884 T12: -0.0385 REMARK 3 T13: -0.0594 T23: -0.0752 REMARK 3 L TENSOR REMARK 3 L11: 5.3779 L22: 5.3448 REMARK 3 L33: 3.4212 L12: -2.1617 REMARK 3 L13: -3.3380 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.1219 S12: -0.3263 S13: -0.0146 REMARK 3 S21: 0.2597 S22: 0.0104 S23: 0.2110 REMARK 3 S31: -0.2714 S32: -0.1954 S33: -0.0795 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 771 THROUGH 792 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0173 39.3962 -42.1741 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.1229 REMARK 3 T33: 0.1476 T12: -0.0058 REMARK 3 T13: -0.0581 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 4.7578 L22: 3.1524 REMARK 3 L33: 4.5891 L12: -3.5328 REMARK 3 L13: 1.9425 L23: -1.6468 REMARK 3 S TENSOR REMARK 3 S11: 0.1197 S12: 0.0051 S13: -0.3768 REMARK 3 S21: -0.4399 S22: 0.0372 S23: 0.2090 REMARK 3 S31: 0.0775 S32: -0.0693 S33: -0.1028 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 793 THROUGH 811 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8792 33.3053 -36.6822 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.2382 REMARK 3 T33: 0.4021 T12: 0.0786 REMARK 3 T13: -0.0467 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.5762 L22: 6.2712 REMARK 3 L33: 1.8734 L12: 1.0715 REMARK 3 L13: -0.8397 L23: -2.7361 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: -0.0859 S13: -0.5313 REMARK 3 S21: -0.2852 S22: -0.3190 S23: -1.0694 REMARK 3 S31: 0.4905 S32: 0.7625 S33: 0.3967 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 812 THROUGH 824 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7045 39.7377 -29.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.3659 T22: 0.3122 REMARK 3 T33: 0.3889 T12: -0.0488 REMARK 3 T13: -0.1217 T23: -0.0868 REMARK 3 L TENSOR REMARK 3 L11: 5.9160 L22: 4.8853 REMARK 3 L33: 3.5385 L12: 1.5642 REMARK 3 L13: -3.1272 L23: -2.6966 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: -0.5396 S13: 0.3630 REMARK 3 S21: 0.5792 S22: -0.1761 S23: -0.7214 REMARK 3 S31: -0.7469 S32: 0.9028 S33: 0.0066 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 742 THROUGH 765 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9866 45.6106 -22.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.6955 T22: 0.4423 REMARK 3 T33: 0.4607 T12: 0.2625 REMARK 3 T13: -0.1308 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 2.0112 L22: 3.6499 REMARK 3 L33: 2.2287 L12: -1.0832 REMARK 3 L13: 0.4579 L23: -2.7874 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: 0.3047 S13: 0.3890 REMARK 3 S21: -0.9354 S22: -0.4824 S23: 0.7889 REMARK 3 S31: -1.3559 S32: -0.6054 S33: 0.1972 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 766 THROUGH 793 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9200 48.0691 -3.3281 REMARK 3 T TENSOR REMARK 3 T11: 0.9539 T22: 1.5175 REMARK 3 T33: 0.3356 T12: 0.0310 REMARK 3 T13: 0.0453 T23: -0.1361 REMARK 3 L TENSOR REMARK 3 L11: 1.3665 L22: 3.9770 REMARK 3 L33: 1.0394 L12: -0.7865 REMARK 3 L13: 0.8156 L23: 0.9198 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: -1.1811 S13: -0.2454 REMARK 3 S21: 1.0965 S22: 0.0205 S23: 0.1501 REMARK 3 S31: -1.2551 S32: 1.2997 S33: -0.2018 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0357 51.4045 -48.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.1894 REMARK 3 T33: 0.2853 T12: -0.0095 REMARK 3 T13: 0.0008 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 5.6289 L22: 1.8027 REMARK 3 L33: 3.5945 L12: -0.7597 REMARK 3 L13: 2.1342 L23: -1.7560 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.3535 S13: 0.5737 REMARK 3 S21: -0.1457 S22: -0.0948 S23: -0.2700 REMARK 3 S31: -0.2131 S32: 0.1549 S33: -0.1097 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7988 50.7346 -49.1629 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.2359 REMARK 3 T33: 0.4015 T12: 0.0515 REMARK 3 T13: -0.0439 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 4.6985 L22: 4.0721 REMARK 3 L33: 5.0097 L12: 1.2038 REMARK 3 L13: 1.5128 L23: -0.5060 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.3483 S13: 0.6089 REMARK 3 S21: -0.2003 S22: -0.0117 S23: -0.5313 REMARK 3 S31: -0.5029 S32: -0.0380 S33: 0.1603 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3234 44.8288 -8.9399 REMARK 3 T TENSOR REMARK 3 T11: 1.4814 T22: 0.8247 REMARK 3 T33: 0.7358 T12: 0.4805 REMARK 3 T13: 0.3388 T23: 0.1535 REMARK 3 L TENSOR REMARK 3 L11: 4.6267 L22: 3.3208 REMARK 3 L33: 0.4651 L12: -1.4891 REMARK 3 L13: 1.2148 L23: 0.3483 REMARK 3 S TENSOR REMARK 3 S11: 0.1974 S12: -0.9219 S13: 0.2673 REMARK 3 S21: 0.6568 S22: 0.3964 S23: 1.1517 REMARK 3 S31: -1.0014 S32: -0.3378 S33: -0.4285 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2735 43.2977 -6.5032 REMARK 3 T TENSOR REMARK 3 T11: 1.1536 T22: 1.0340 REMARK 3 T33: 0.7219 T12: 0.5843 REMARK 3 T13: 0.1338 T23: 0.2054 REMARK 3 L TENSOR REMARK 3 L11: 2.1294 L22: 1.2957 REMARK 3 L33: 2.9428 L12: 1.6905 REMARK 3 L13: -1.1441 L23: -0.9099 REMARK 3 S TENSOR REMARK 3 S11: -0.4264 S12: -1.3580 S13: -0.3160 REMARK 3 S21: 0.9846 S22: 0.3118 S23: 0.7634 REMARK 3 S31: -1.2166 S32: 0.0533 S33: 0.0783 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.99400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE (PH6.5), 18% W/V POLYETHYLENE REMARK 280 GLYCOL 8,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.24467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.12233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.12233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 142.24467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 727 REMARK 465 SER A 728 REMARK 465 HIS A 729 REMARK 465 MET A 730 REMARK 465 GLY A 731 REMARK 465 ARG A 732 REMARK 465 PRO A 733 REMARK 465 SER A 734 REMARK 465 SER A 735 REMARK 465 LYS A 736 REMARK 465 GLU A 737 REMARK 465 GLY A 738 REMARK 465 ARG A 739 REMARK 465 GLN A 794 REMARK 465 VAL A 795 REMARK 465 GLY A 796 REMARK 465 LYS A 797 REMARK 465 ASP A 825 REMARK 465 ARG A 826 REMARK 465 VAL A 827 REMARK 465 LEU A 828 REMARK 465 ASN A 829 REMARK 465 ASN A 830 REMARK 465 ASP A 831 REMARK 465 ILE A 832 REMARK 465 LYS A 833 REMARK 465 THR A 834 REMARK 465 GLU A 835 REMARK 465 GLY B 727 REMARK 465 SER B 728 REMARK 465 HIS B 729 REMARK 465 MET B 730 REMARK 465 GLY B 731 REMARK 465 ARG B 732 REMARK 465 PRO B 733 REMARK 465 SER B 734 REMARK 465 SER B 735 REMARK 465 LYS B 736 REMARK 465 GLU B 737 REMARK 465 GLY B 738 REMARK 465 ARG B 739 REMARK 465 ARG B 740 REMARK 465 SER B 741 REMARK 465 GLN B 794 REMARK 465 VAL B 795 REMARK 465 GLY B 796 REMARK 465 LYS B 797 REMARK 465 ASP B 798 REMARK 465 VAL B 799 REMARK 465 TYR B 800 REMARK 465 LYS B 801 REMARK 465 CYS B 802 REMARK 465 GLU B 803 REMARK 465 ILE B 804 REMARK 465 CYS B 805 REMARK 465 LYS B 806 REMARK 465 MET B 807 REMARK 465 PRO B 808 REMARK 465 PHE B 809 REMARK 465 SER B 810 REMARK 465 VAL B 811 REMARK 465 TYR B 812 REMARK 465 SER B 813 REMARK 465 THR B 814 REMARK 465 LEU B 815 REMARK 465 GLU B 816 REMARK 465 LYS B 817 REMARK 465 HIS B 818 REMARK 465 MET B 819 REMARK 465 LYS B 820 REMARK 465 LYS B 821 REMARK 465 TRP B 822 REMARK 465 HIS B 823 REMARK 465 SER B 824 REMARK 465 ASP B 825 REMARK 465 ARG B 826 REMARK 465 VAL B 827 REMARK 465 LEU B 828 REMARK 465 ASN B 829 REMARK 465 ASN B 830 REMARK 465 ASP B 831 REMARK 465 ILE B 832 REMARK 465 LYS B 833 REMARK 465 THR B 834 REMARK 465 GLU B 835 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 740 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 768 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 771 CG CD CE NZ REMARK 470 ASN B 776 CG OD1 ND2 REMARK 470 HIS B 788 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 747 -148.72 -92.64 REMARK 500 PRO B 769 -135.06 -75.77 REMARK 500 LEU B 774 -81.51 -114.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 744 SG REMARK 620 2 CYS A 747 SG 111.3 REMARK 620 3 HIS A 760 NE2 100.9 105.4 REMARK 620 4 HIS A 764 NE2 104.7 130.9 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 772 SG REMARK 620 2 CYS A 775 SG 120.9 REMARK 620 3 HIS A 788 NE2 107.1 97.0 REMARK 620 4 HIS A 792 NE2 108.0 117.7 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 802 SG REMARK 620 2 CYS A 805 SG 107.7 REMARK 620 3 HIS A 818 NE2 110.4 94.2 REMARK 620 4 HIS A 823 NE2 104.7 130.7 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 744 SG REMARK 620 2 CYS B 747 SG 112.7 REMARK 620 3 HIS B 760 NE2 107.6 111.2 REMARK 620 4 HIS B 764 NE2 106.2 117.5 100.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 902 DBREF 6KI6 A 731 835 UNP Q9H165 BC11A_HUMAN 731 835 DBREF 6KI6 B 731 835 UNP Q9H165 BC11A_HUMAN 731 835 DBREF 6KI6 C 1 13 PDB 6KI6 6KI6 1 13 DBREF 6KI6 D 1 13 PDB 6KI6 6KI6 1 13 DBREF 6KI6 E 1 13 PDB 6KI6 6KI6 1 13 DBREF 6KI6 F 1 13 PDB 6KI6 6KI6 1 13 SEQADV 6KI6 GLY A 727 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 SER A 728 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 HIS A 729 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 MET A 730 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 GLY B 727 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 SER B 728 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 HIS B 729 UNP Q9H165 EXPRESSION TAG SEQADV 6KI6 MET B 730 UNP Q9H165 EXPRESSION TAG SEQRES 1 A 109 GLY SER HIS MET GLY ARG PRO SER SER LYS GLU GLY ARG SEQRES 2 A 109 ARG SER ASP THR CYS GLU TYR CYS GLY LYS VAL PHE LYS SEQRES 3 A 109 ASN CYS SER ASN LEU THR VAL HIS ARG ARG SER HIS THR SEQRES 4 A 109 GLY GLU ARG PRO TYR LYS CYS GLU LEU CYS ASN TYR ALA SEQRES 5 A 109 CYS ALA GLN SER SER LYS LEU THR ARG HIS MET LYS THR SEQRES 6 A 109 HIS GLY GLN VAL GLY LYS ASP VAL TYR LYS CYS GLU ILE SEQRES 7 A 109 CYS LYS MET PRO PHE SER VAL TYR SER THR LEU GLU LYS SEQRES 8 A 109 HIS MET LYS LYS TRP HIS SER ASP ARG VAL LEU ASN ASN SEQRES 9 A 109 ASP ILE LYS THR GLU SEQRES 1 B 109 GLY SER HIS MET GLY ARG PRO SER SER LYS GLU GLY ARG SEQRES 2 B 109 ARG SER ASP THR CYS GLU TYR CYS GLY LYS VAL PHE LYS SEQRES 3 B 109 ASN CYS SER ASN LEU THR VAL HIS ARG ARG SER HIS THR SEQRES 4 B 109 GLY GLU ARG PRO TYR LYS CYS GLU LEU CYS ASN TYR ALA SEQRES 5 B 109 CYS ALA GLN SER SER LYS LEU THR ARG HIS MET LYS THR SEQRES 6 B 109 HIS GLY GLN VAL GLY LYS ASP VAL TYR LYS CYS GLU ILE SEQRES 7 B 109 CYS LYS MET PRO PHE SER VAL TYR SER THR LEU GLU LYS SEQRES 8 B 109 HIS MET LYS LYS TRP HIS SER ASP ARG VAL LEU ASN ASN SEQRES 9 B 109 ASP ILE LYS THR GLU SEQRES 1 C 13 DA DT DA DT DT DG DG DT DC DA DA DG DG SEQRES 1 D 13 DT DC DC DT DT DG DA DC DC DA DA DT DA SEQRES 1 E 13 DT DC DC DT DT DG DA DC DC DA DA DT DA SEQRES 1 F 13 DA DT DA DT DT DG DG DT DC DA DA DG DG HET ZN A 901 1 HET ZN A 902 1 HET ZN A 903 1 HET ZN B 901 1 HET ZN B 902 1 HETNAM ZN ZINC ION FORMUL 7 ZN 5(ZN 2+) FORMUL 12 HOH *69(H2 O) HELIX 1 AA1 ASN A 753 GLY A 766 1 14 HELIX 2 AA2 GLN A 781 LYS A 790 1 10 HELIX 3 AA3 THR A 791 GLY A 793 5 3 HELIX 4 AA4 VAL A 811 HIS A 823 1 13 HELIX 5 AA5 ASN B 753 GLY B 766 1 14 HELIX 6 AA6 GLN B 781 HIS B 788 1 8 SHEET 1 AA1 2 ASP A 742 THR A 743 0 SHEET 2 AA1 2 VAL A 750 PHE A 751 -1 O PHE A 751 N ASP A 742 SHEET 1 AA2 2 TYR A 770 LYS A 771 0 SHEET 2 AA2 2 ALA A 778 CYS A 779 -1 O CYS A 779 N TYR A 770 SHEET 1 AA3 2 TYR A 800 LYS A 801 0 SHEET 2 AA3 2 PRO A 808 PHE A 809 -1 O PHE A 809 N TYR A 800 LINK SG CYS A 744 ZN ZN A 901 1555 1555 2.31 LINK SG CYS A 747 ZN ZN A 901 1555 1555 2.33 LINK NE2 HIS A 760 ZN ZN A 901 1555 1555 2.11 LINK NE2 HIS A 764 ZN ZN A 901 1555 1555 2.01 LINK SG CYS A 772 ZN ZN A 902 1555 1555 2.38 LINK SG CYS A 775 ZN ZN A 902 1555 1555 2.27 LINK NE2 HIS A 788 ZN ZN A 902 1555 1555 2.10 LINK NE2 HIS A 792 ZN ZN A 902 1555 1555 2.06 LINK SG CYS A 802 ZN ZN A 903 1555 1555 2.36 LINK SG CYS A 805 ZN ZN A 903 1555 1555 2.27 LINK NE2 HIS A 818 ZN ZN A 903 1555 1555 2.08 LINK NE2 HIS A 823 ZN ZN A 903 1555 1555 2.03 LINK SG CYS B 744 ZN ZN B 901 1555 1555 2.37 LINK SG CYS B 747 ZN ZN B 901 1555 1555 2.37 LINK NE2 HIS B 760 ZN ZN B 901 1555 1555 2.03 LINK NE2 HIS B 764 ZN ZN B 901 1555 1555 2.18 LINK SG CYS B 775 ZN ZN B 902 1555 1555 2.23 SITE 1 AC1 4 CYS A 744 CYS A 747 HIS A 760 HIS A 764 SITE 1 AC2 4 CYS A 772 CYS A 775 HIS A 788 HIS A 792 SITE 1 AC3 4 CYS A 802 CYS A 805 HIS A 818 HIS A 823 SITE 1 AC4 4 CYS B 744 CYS B 747 HIS B 760 HIS B 764 SITE 1 AC5 3 CYS B 775 HIS B 788 HIS B 792 CRYST1 59.555 59.555 213.367 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016791 0.009694 0.000000 0.00000 SCALE2 0.000000 0.019389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004687 0.00000