data_6KIJ # _entry.id 6KIJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6KIJ WWPDB D_1300013073 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6KIJ _pdbx_database_status.recvd_initial_deposition_date 2019-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, N.' 1 ? 'Bao, H.' 2 ? 'Huang, H.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 10388 _citation.page_last 10399 _citation.title 'Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz744 _citation.pdbx_database_id_PubMed 31504793 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, N.' 1 ? primary 'Bao, H.' 2 ? primary 'Chen, L.' 3 ? primary 'Liu, Y.' 4 ? primary 'Li, Y.' 5 ? primary 'Wu, B.' 6 ? primary 'Huang, H.' 7 ? # _cell.entry_id 6KIJ _cell.length_a 47.444 _cell.length_b 44.080 _cell.length_c 55.148 _cell.angle_alpha 90.00 _cell.angle_beta 102.33 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KIJ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SOS response-associated protein' 25606.893 1 3.4.-.- ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*TP*TP*CP*GP*TP*CP*G)-3') ; 2746.809 1 ? ? ? ? 3 non-polymer syn PENTANE-3,4-DIOL-5-PHOSPHATE 200.127 1 ? ? ? ? 4 non-polymer nat GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 323 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'E.coli yedK' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETA ATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHD RRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ ; ;CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETA ATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHD RRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ ; B ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DT)(DC)(DG)(DT)(DC)(DG)' GATTCGTCG A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 ARG n 1 4 PHE n 1 5 ALA n 1 6 GLN n 1 7 SER n 1 8 GLN n 1 9 THR n 1 10 ARG n 1 11 GLU n 1 12 ASP n 1 13 TYR n 1 14 LEU n 1 15 ALA n 1 16 LEU n 1 17 LEU n 1 18 ALA n 1 19 GLU n 1 20 ASP n 1 21 ILE n 1 22 GLU n 1 23 ARG n 1 24 ASP n 1 25 ILE n 1 26 PRO n 1 27 TYR n 1 28 ASP n 1 29 PRO n 1 30 GLU n 1 31 PRO n 1 32 ILE n 1 33 GLY n 1 34 ARG n 1 35 TYR n 1 36 ASN n 1 37 VAL n 1 38 ALA n 1 39 PRO n 1 40 GLY n 1 41 THR n 1 42 LYS n 1 43 VAL n 1 44 LEU n 1 45 LEU n 1 46 LEU n 1 47 SER n 1 48 GLU n 1 49 ARG n 1 50 ASP n 1 51 GLU n 1 52 HIS n 1 53 LEU n 1 54 HIS n 1 55 LEU n 1 56 ASP n 1 57 PRO n 1 58 VAL n 1 59 PHE n 1 60 TRP n 1 61 GLY n 1 62 TYR n 1 63 ALA n 1 64 PRO n 1 65 GLY n 1 66 TRP n 1 67 TRP n 1 68 ASP n 1 69 LYS n 1 70 PRO n 1 71 PRO n 1 72 LEU n 1 73 ILE n 1 74 ASN n 1 75 ALA n 1 76 ARG n 1 77 VAL n 1 78 GLU n 1 79 THR n 1 80 ALA n 1 81 ALA n 1 82 THR n 1 83 SER n 1 84 ARG n 1 85 MET n 1 86 PHE n 1 87 LYS n 1 88 PRO n 1 89 LEU n 1 90 TRP n 1 91 GLN n 1 92 HIS n 1 93 GLY n 1 94 ARG n 1 95 ALA n 1 96 ILE n 1 97 CYS n 1 98 PHE n 1 99 ALA n 1 100 ASP n 1 101 GLY n 1 102 TRP n 1 103 PHE n 1 104 GLU n 1 105 TRP n 1 106 LYS n 1 107 LYS n 1 108 GLU n 1 109 GLY n 1 110 ASP n 1 111 LYS n 1 112 LYS n 1 113 GLN n 1 114 PRO n 1 115 PHE n 1 116 PHE n 1 117 ILE n 1 118 TYR n 1 119 ARG n 1 120 ALA n 1 121 ASP n 1 122 GLY n 1 123 GLN n 1 124 PRO n 1 125 ILE n 1 126 PHE n 1 127 MET n 1 128 ALA n 1 129 ALA n 1 130 ILE n 1 131 GLY n 1 132 SER n 1 133 THR n 1 134 PRO n 1 135 PHE n 1 136 GLU n 1 137 ARG n 1 138 GLY n 1 139 ASP n 1 140 GLU n 1 141 ALA n 1 142 GLU n 1 143 GLY n 1 144 PHE n 1 145 LEU n 1 146 ILE n 1 147 VAL n 1 148 THR n 1 149 ALA n 1 150 ALA n 1 151 ALA n 1 152 ASP n 1 153 GLN n 1 154 GLY n 1 155 LEU n 1 156 VAL n 1 157 ASP n 1 158 ILE n 1 159 HIS n 1 160 ASP n 1 161 ARG n 1 162 ARG n 1 163 PRO n 1 164 LEU n 1 165 VAL n 1 166 LEU n 1 167 SER n 1 168 PRO n 1 169 GLU n 1 170 ALA n 1 171 ALA n 1 172 ARG n 1 173 GLU n 1 174 TRP n 1 175 MET n 1 176 ARG n 1 177 GLN n 1 178 GLU n 1 179 ILE n 1 180 SER n 1 181 GLY n 1 182 LYS n 1 183 GLU n 1 184 ALA n 1 185 SER n 1 186 GLU n 1 187 ILE n 1 188 ALA n 1 189 ALA n 1 190 SER n 1 191 GLY n 1 192 CYS n 1 193 VAL n 1 194 PRO n 1 195 ALA n 1 196 ASN n 1 197 GLN n 1 198 PHE n 1 199 SER n 1 200 TRP n 1 201 HIS n 1 202 PRO n 1 203 VAL n 1 204 SER n 1 205 ARG n 1 206 ALA n 1 207 VAL n 1 208 GLY n 1 209 ASN n 1 210 VAL n 1 211 LYS n 1 212 ASN n 1 213 GLN n 1 214 GLY n 1 215 ALA n 1 216 GLU n 1 217 LEU n 1 218 ILE n 1 219 GLN n 1 220 PRO n 1 221 VAL n 1 222 LEU n 1 223 GLU n 1 224 VAL n 1 225 LEU n 1 226 PHE n 1 227 GLN n 2 1 DG n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DC n 2 6 DG n 2 7 DT n 2 8 DC n 2 9 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 227 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'yedK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SAMEA3472108_01185, SAMEA3752559_04370' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A2S5ZH06_ECOLX A0A2S5ZH06 ? 1 ;CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETA ATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHD RRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV ; 2 2 PDB 6KIJ 6KIJ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6KIJ B 1 ? 221 ? A0A2S5ZH06 2 ? 222 ? 2 222 2 2 6KIJ A 1 ? 9 ? 6KIJ -3 ? 5 ? -3 5 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6KIJ LEU B 222 ? UNP A0A2S5ZH06 ? ? 'expression tag' 223 1 1 6KIJ GLU B 223 ? UNP A0A2S5ZH06 ? ? 'expression tag' 224 2 1 6KIJ VAL B 224 ? UNP A0A2S5ZH06 ? ? 'expression tag' 225 3 1 6KIJ LEU B 225 ? UNP A0A2S5ZH06 ? ? 'expression tag' 226 4 1 6KIJ PHE B 226 ? UNP A0A2S5ZH06 ? ? 'expression tag' 227 5 1 6KIJ GLN B 227 ? UNP A0A2S5ZH06 ? ? 'expression tag' 228 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PED non-polymer . PENTANE-3,4-DIOL-5-PHOSPHATE ;OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ; 'C5 H13 O6 P' 200.127 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6KIJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2M Ammonium formate 20% w/v PEG3350 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-01-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 6KIJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.579 _reflns.number_obs 30514 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.12100 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.0000 _reflns.B_iso_Wilson_estimate 13.76 _reflns.pdbx_redundancy 6.700 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.68900 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.80 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2980 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 6KIJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29992 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.17 _refine.ls_d_res_high 1.58 _refine.ls_percent_reflns_obs 97.6 _refine.ls_R_factor_obs 0.154 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.152 _refine.ls_R_factor_R_free 0.183 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.150 _refine.ls_number_reflns_R_free 1546 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.46 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 6KBS _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.150 _refine.pdbx_overall_phase_error 17.200 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1800 _refine_hist.pdbx_number_atoms_nucleic_acid 59 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 323 _refine_hist.number_atoms_total 2199 _refine_hist.d_res_high 1.58 _refine_hist.d_res_low 23.17 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1943 'X-RAY DIFFRACTION' ? f_angle_d 0.901 ? ? 2651 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.876 ? ? 1571 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 274 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 340 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5800 1.6300 2205 0.2165 85.00 0.2487 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.6300 1.6882 2478 0.2018 96.00 0.2531 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.6882 1.7558 2608 0.1800 99.00 0.2157 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.7558 1.8357 2609 0.1712 99.00 0.2129 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.8357 1.9324 2588 0.1597 99.00 0.1936 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.9324 2.0534 2668 0.1432 100.00 0.1774 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.0534 2.2118 2619 0.1463 100.00 0.1959 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.2118 2.4342 2625 0.1471 99.00 0.1817 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.4342 2.7859 2673 0.1541 100.00 0.1874 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.7859 3.5080 2647 0.1423 99.00 0.1718 . . 146 . . . . 'X-RAY DIFFRACTION' . 3.5080 23.1740 2726 0.1391 99.00 0.1476 . . 140 . . . . # _struct.entry_id 6KIJ _struct.title 'Crystal structure of yedK with ssDNA containing an abasic site' _struct.pdbx_descriptor 'Tubulinyl-Tyr carboxypeptidase 1 (E.C.3.4.17.17), Small vasohibin-binding protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6KIJ _struct_keywords.text 'DNA repair, abasic site, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 9 ? ALA A 15 ? THR B 10 ALA B 16 1 ? 7 HELX_P HELX_P2 AA2 GLU A 19 ? ARG A 23 ? GLU B 20 ARG B 24 5 ? 5 HELX_P HELX_P3 AA3 PHE A 86 ? GLY A 93 ? PHE B 87 GLY B 94 1 ? 8 HELX_P HELX_P4 AA4 PRO A 134 ? GLY A 138 ? PRO B 135 GLY B 139 5 ? 5 HELX_P HELX_P5 AA5 ASP A 152 ? ILE A 158 ? ASP B 153 ILE B 159 5 ? 7 HELX_P HELX_P6 AA6 SER A 167 ? ARG A 176 ? SER B 168 ARG B 177 1 ? 10 HELX_P HELX_P7 AA7 SER A 180 ? CYS A 192 ? SER B 181 CYS B 193 1 ? 13 HELX_P HELX_P8 AA8 PRO A 194 ? ASN A 196 ? PRO B 195 ASN B 197 5 ? 3 HELX_P HELX_P9 AA9 SER A 204 ? ASN A 209 ? SER B 205 ASN B 210 5 ? 6 HELX_P HELX_P10 AB1 GLY A 214 ? GLN A 219 ? GLY B 215 GLN B 220 5 ? 6 HELX_P HELX_P11 AB2 LEU A 222 ? PHE A 226 ? LEU B 223 PHE B 227 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale one ? A CYS 1 N ? ? ? 1_555 C PED . "C1'" ? ? B CYS 2 B PED 301 1_555 ? ? ? ? ? ? ? 1.476 ? covale2 covale one ? B DC 5 "O3'" ? ? ? 1_555 C PED . P ? ? A DC 1 B PED 301 1_555 ? ? ? ? ? ? ? 1.563 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 133 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 134 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 134 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 135 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.42 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 34 ? VAL A 37 ? ARG B 35 VAL B 38 AA1 2 ARG A 3 ? GLN A 6 ? ARG B 4 GLN B 7 AA1 3 GLY A 101 ? GLU A 108 ? GLY B 102 GLU B 109 AA1 4 LYS A 111 ? ARG A 119 ? LYS B 112 ARG B 120 AA1 5 PHE A 198 ? PRO A 202 ? PHE B 199 PRO B 203 AA2 1 LYS A 42 ? ARG A 49 ? LYS B 43 ARG B 50 AA2 2 HIS A 52 ? PHE A 59 ? HIS B 53 PHE B 60 AA3 1 ASN A 74 ? ARG A 76 ? ASN B 75 ARG B 77 AA3 2 PHE A 144 ? ALA A 150 ? PHE B 145 ALA B 151 AA3 3 ILE A 125 ? GLY A 131 ? ILE B 126 GLY B 132 AA3 4 ARG A 161 ? PRO A 163 ? ARG B 162 PRO B 164 AA4 1 ARG A 94 ? ALA A 99 ? ARG B 95 ALA B 100 AA4 2 ILE A 125 ? GLY A 131 ? ILE B 126 GLY B 132 AA4 3 PHE A 144 ? ALA A 150 ? PHE B 145 ALA B 151 AA4 4 VAL A 165 ? LEU A 166 ? VAL B 166 LEU B 167 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ARG A 34 ? O ARG B 35 N GLN A 6 ? N GLN B 7 AA1 2 3 N ALA A 5 ? N ALA B 6 O GLY A 101 ? O GLY B 102 AA1 3 4 N GLU A 108 ? N GLU B 109 O LYS A 111 ? O LYS B 112 AA1 4 5 N TYR A 118 ? N TYR B 119 O SER A 199 ? O SER B 200 AA2 1 2 N SER A 47 ? N SER B 48 O HIS A 54 ? O HIS B 55 AA3 1 2 N ALA A 75 ? N ALA B 76 O THR A 148 ? O THR B 149 AA3 2 3 O LEU A 145 ? O LEU B 146 N ILE A 130 ? N ILE B 131 AA4 1 2 N ALA A 99 ? N ALA B 100 O ILE A 125 ? O ILE B 126 AA4 2 3 N ILE A 130 ? N ILE B 131 O LEU A 145 ? O LEU B 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B PED 301 ? 11 'binding site for residue PED B 301' AC2 Software B GOL 302 ? 3 'binding site for residue GOL B 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DC B 5 ? DC A 1 . ? 1_555 ? 2 AC1 11 CYS A 1 ? CYS B 2 . ? 1_555 ? 3 AC1 11 GLY A 2 ? GLY B 3 . ? 1_555 ? 4 AC1 11 ASN A 74 ? ASN B 75 . ? 1_555 ? 5 AC1 11 ARG A 76 ? ARG B 77 . ? 1_555 ? 6 AC1 11 THR A 148 ? THR B 149 . ? 1_555 ? 7 AC1 11 HIS A 159 ? HIS B 160 . ? 1_555 ? 8 AC1 11 ARG A 161 ? ARG B 162 . ? 1_555 ? 9 AC1 11 HOH E . ? HOH B 462 . ? 1_555 ? 10 AC1 11 HOH E . ? HOH B 517 . ? 1_555 ? 11 AC1 11 HOH E . ? HOH B 534 . ? 1_555 ? 12 AC2 3 ASP A 20 ? ASP B 21 . ? 1_555 ? 13 AC2 3 TYR A 27 ? TYR B 28 . ? 1_555 ? 14 AC2 3 HOH E . ? HOH B 602 . ? 1_555 ? # _atom_sites.entry_id 6KIJ _atom_sites.fract_transf_matrix[1][1] 0.021077 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004609 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022686 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018562 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 2 2 CYS CYS B . n A 1 2 GLY 2 3 3 GLY GLY B . n A 1 3 ARG 3 4 4 ARG ARG B . n A 1 4 PHE 4 5 5 PHE PHE B . n A 1 5 ALA 5 6 6 ALA ALA B . n A 1 6 GLN 6 7 7 GLN GLN B . n A 1 7 SER 7 8 8 SER SER B . n A 1 8 GLN 8 9 9 GLN GLN B . n A 1 9 THR 9 10 10 THR THR B . n A 1 10 ARG 10 11 11 ARG ARG B . n A 1 11 GLU 11 12 12 GLU GLU B . n A 1 12 ASP 12 13 13 ASP ASP B . n A 1 13 TYR 13 14 14 TYR TYR B . n A 1 14 LEU 14 15 15 LEU LEU B . n A 1 15 ALA 15 16 16 ALA ALA B . n A 1 16 LEU 16 17 17 LEU LEU B . n A 1 17 LEU 17 18 18 LEU LEU B . n A 1 18 ALA 18 19 19 ALA ALA B . n A 1 19 GLU 19 20 20 GLU GLU B . n A 1 20 ASP 20 21 21 ASP ASP B . n A 1 21 ILE 21 22 22 ILE ILE B . n A 1 22 GLU 22 23 23 GLU GLU B . n A 1 23 ARG 23 24 24 ARG ARG B . n A 1 24 ASP 24 25 25 ASP ASP B . n A 1 25 ILE 25 26 26 ILE ILE B . n A 1 26 PRO 26 27 27 PRO PRO B . n A 1 27 TYR 27 28 28 TYR TYR B . n A 1 28 ASP 28 29 29 ASP ASP B . n A 1 29 PRO 29 30 30 PRO PRO B . n A 1 30 GLU 30 31 31 GLU GLU B . n A 1 31 PRO 31 32 32 PRO PRO B . n A 1 32 ILE 32 33 33 ILE ILE B . n A 1 33 GLY 33 34 34 GLY GLY B . n A 1 34 ARG 34 35 35 ARG ARG B . n A 1 35 TYR 35 36 36 TYR TYR B . n A 1 36 ASN 36 37 37 ASN ASN B . n A 1 37 VAL 37 38 38 VAL VAL B . n A 1 38 ALA 38 39 39 ALA ALA B . n A 1 39 PRO 39 40 40 PRO PRO B . n A 1 40 GLY 40 41 41 GLY GLY B . n A 1 41 THR 41 42 42 THR THR B . n A 1 42 LYS 42 43 43 LYS LYS B . n A 1 43 VAL 43 44 44 VAL VAL B . n A 1 44 LEU 44 45 45 LEU LEU B . n A 1 45 LEU 45 46 46 LEU LEU B . n A 1 46 LEU 46 47 47 LEU LEU B . n A 1 47 SER 47 48 48 SER SER B . n A 1 48 GLU 48 49 49 GLU GLU B . n A 1 49 ARG 49 50 50 ARG ARG B . n A 1 50 ASP 50 51 51 ASP ASP B . n A 1 51 GLU 51 52 52 GLU GLU B . n A 1 52 HIS 52 53 53 HIS HIS B . n A 1 53 LEU 53 54 54 LEU LEU B . n A 1 54 HIS 54 55 55 HIS HIS B . n A 1 55 LEU 55 56 56 LEU LEU B . n A 1 56 ASP 56 57 57 ASP ASP B . n A 1 57 PRO 57 58 58 PRO PRO B . n A 1 58 VAL 58 59 59 VAL VAL B . n A 1 59 PHE 59 60 60 PHE PHE B . n A 1 60 TRP 60 61 61 TRP TRP B . n A 1 61 GLY 61 62 62 GLY GLY B . n A 1 62 TYR 62 63 63 TYR TYR B . n A 1 63 ALA 63 64 64 ALA ALA B . n A 1 64 PRO 64 65 65 PRO PRO B . n A 1 65 GLY 65 66 66 GLY GLY B . n A 1 66 TRP 66 67 67 TRP TRP B . n A 1 67 TRP 67 68 68 TRP TRP B . n A 1 68 ASP 68 69 69 ASP ASP B . n A 1 69 LYS 69 70 70 LYS LYS B . n A 1 70 PRO 70 71 71 PRO PRO B . n A 1 71 PRO 71 72 72 PRO PRO B . n A 1 72 LEU 72 73 73 LEU LEU B . n A 1 73 ILE 73 74 74 ILE ILE B . n A 1 74 ASN 74 75 75 ASN ASN B . n A 1 75 ALA 75 76 76 ALA ALA B . n A 1 76 ARG 76 77 77 ARG ARG B . n A 1 77 VAL 77 78 78 VAL VAL B . n A 1 78 GLU 78 79 79 GLU GLU B . n A 1 79 THR 79 80 80 THR THR B . n A 1 80 ALA 80 81 81 ALA ALA B . n A 1 81 ALA 81 82 82 ALA ALA B . n A 1 82 THR 82 83 83 THR THR B . n A 1 83 SER 83 84 84 SER SER B . n A 1 84 ARG 84 85 85 ARG ARG B . n A 1 85 MET 85 86 86 MET MET B . n A 1 86 PHE 86 87 87 PHE PHE B . n A 1 87 LYS 87 88 88 LYS LYS B . n A 1 88 PRO 88 89 89 PRO PRO B . n A 1 89 LEU 89 90 90 LEU LEU B . n A 1 90 TRP 90 91 91 TRP TRP B . n A 1 91 GLN 91 92 92 GLN GLN B . n A 1 92 HIS 92 93 93 HIS HIS B . n A 1 93 GLY 93 94 94 GLY GLY B . n A 1 94 ARG 94 95 95 ARG ARG B . n A 1 95 ALA 95 96 96 ALA ALA B . n A 1 96 ILE 96 97 97 ILE ILE B . n A 1 97 CYS 97 98 98 CYS CYS B . n A 1 98 PHE 98 99 99 PHE PHE B . n A 1 99 ALA 99 100 100 ALA ALA B . n A 1 100 ASP 100 101 101 ASP ASP B . n A 1 101 GLY 101 102 102 GLY GLY B . n A 1 102 TRP 102 103 103 TRP TRP B . n A 1 103 PHE 103 104 104 PHE PHE B . n A 1 104 GLU 104 105 105 GLU GLU B . n A 1 105 TRP 105 106 106 TRP TRP B . n A 1 106 LYS 106 107 107 LYS LYS B . n A 1 107 LYS 107 108 108 LYS LYS B . n A 1 108 GLU 108 109 109 GLU GLU B . n A 1 109 GLY 109 110 110 GLY GLY B . n A 1 110 ASP 110 111 111 ASP ASP B . n A 1 111 LYS 111 112 112 LYS LYS B . n A 1 112 LYS 112 113 113 LYS LYS B . n A 1 113 GLN 113 114 114 GLN GLN B . n A 1 114 PRO 114 115 115 PRO PRO B . n A 1 115 PHE 115 116 116 PHE PHE B . n A 1 116 PHE 116 117 117 PHE PHE B . n A 1 117 ILE 117 118 118 ILE ILE B . n A 1 118 TYR 118 119 119 TYR TYR B . n A 1 119 ARG 119 120 120 ARG ARG B . n A 1 120 ALA 120 121 121 ALA ALA B . n A 1 121 ASP 121 122 122 ASP ASP B . n A 1 122 GLY 122 123 123 GLY GLY B . n A 1 123 GLN 123 124 124 GLN GLN B . n A 1 124 PRO 124 125 125 PRO PRO B . n A 1 125 ILE 125 126 126 ILE ILE B . n A 1 126 PHE 126 127 127 PHE PHE B . n A 1 127 MET 127 128 128 MET MET B . n A 1 128 ALA 128 129 129 ALA ALA B . n A 1 129 ALA 129 130 130 ALA ALA B . n A 1 130 ILE 130 131 131 ILE ILE B . n A 1 131 GLY 131 132 132 GLY GLY B . n A 1 132 SER 132 133 133 SER SER B . n A 1 133 THR 133 134 134 THR THR B . n A 1 134 PRO 134 135 135 PRO PRO B . n A 1 135 PHE 135 136 136 PHE PHE B . n A 1 136 GLU 136 137 137 GLU GLU B . n A 1 137 ARG 137 138 138 ARG ARG B . n A 1 138 GLY 138 139 139 GLY GLY B . n A 1 139 ASP 139 140 140 ASP ASP B . n A 1 140 GLU 140 141 141 GLU GLU B . n A 1 141 ALA 141 142 142 ALA ALA B . n A 1 142 GLU 142 143 143 GLU GLU B . n A 1 143 GLY 143 144 144 GLY GLY B . n A 1 144 PHE 144 145 145 PHE PHE B . n A 1 145 LEU 145 146 146 LEU LEU B . n A 1 146 ILE 146 147 147 ILE ILE B . n A 1 147 VAL 147 148 148 VAL VAL B . n A 1 148 THR 148 149 149 THR THR B . n A 1 149 ALA 149 150 150 ALA ALA B . n A 1 150 ALA 150 151 151 ALA ALA B . n A 1 151 ALA 151 152 152 ALA ALA B . n A 1 152 ASP 152 153 153 ASP ASP B . n A 1 153 GLN 153 154 154 GLN GLN B . n A 1 154 GLY 154 155 155 GLY GLY B . n A 1 155 LEU 155 156 156 LEU LEU B . n A 1 156 VAL 156 157 157 VAL VAL B . n A 1 157 ASP 157 158 158 ASP ASP B . n A 1 158 ILE 158 159 159 ILE ILE B . n A 1 159 HIS 159 160 160 HIS HIS B . n A 1 160 ASP 160 161 161 ASP ASP B . n A 1 161 ARG 161 162 162 ARG ARG B . n A 1 162 ARG 162 163 163 ARG ARG B . n A 1 163 PRO 163 164 164 PRO PRO B . n A 1 164 LEU 164 165 165 LEU LEU B . n A 1 165 VAL 165 166 166 VAL VAL B . n A 1 166 LEU 166 167 167 LEU LEU B . n A 1 167 SER 167 168 168 SER SER B . n A 1 168 PRO 168 169 169 PRO PRO B . n A 1 169 GLU 169 170 170 GLU GLU B . n A 1 170 ALA 170 171 171 ALA ALA B . n A 1 171 ALA 171 172 172 ALA ALA B . n A 1 172 ARG 172 173 173 ARG ARG B . n A 1 173 GLU 173 174 174 GLU GLU B . n A 1 174 TRP 174 175 175 TRP TRP B . n A 1 175 MET 175 176 176 MET MET B . n A 1 176 ARG 176 177 177 ARG ARG B . n A 1 177 GLN 177 178 178 GLN GLN B . n A 1 178 GLU 178 179 179 GLU GLU B . n A 1 179 ILE 179 180 180 ILE ILE B . n A 1 180 SER 180 181 181 SER SER B . n A 1 181 GLY 181 182 182 GLY GLY B . n A 1 182 LYS 182 183 183 LYS LYS B . n A 1 183 GLU 183 184 184 GLU GLU B . n A 1 184 ALA 184 185 185 ALA ALA B . n A 1 185 SER 185 186 186 SER SER B . n A 1 186 GLU 186 187 187 GLU GLU B . n A 1 187 ILE 187 188 188 ILE ILE B . n A 1 188 ALA 188 189 189 ALA ALA B . n A 1 189 ALA 189 190 190 ALA ALA B . n A 1 190 SER 190 191 191 SER SER B . n A 1 191 GLY 191 192 192 GLY GLY B . n A 1 192 CYS 192 193 193 CYS CYS B . n A 1 193 VAL 193 194 194 VAL VAL B . n A 1 194 PRO 194 195 195 PRO PRO B . n A 1 195 ALA 195 196 196 ALA ALA B . n A 1 196 ASN 196 197 197 ASN ASN B . n A 1 197 GLN 197 198 198 GLN GLN B . n A 1 198 PHE 198 199 199 PHE PHE B . n A 1 199 SER 199 200 200 SER SER B . n A 1 200 TRP 200 201 201 TRP TRP B . n A 1 201 HIS 201 202 202 HIS HIS B . n A 1 202 PRO 202 203 203 PRO PRO B . n A 1 203 VAL 203 204 204 VAL VAL B . n A 1 204 SER 204 205 205 SER SER B . n A 1 205 ARG 205 206 206 ARG ARG B . n A 1 206 ALA 206 207 207 ALA ALA B . n A 1 207 VAL 207 208 208 VAL VAL B . n A 1 208 GLY 208 209 209 GLY GLY B . n A 1 209 ASN 209 210 210 ASN ASN B . n A 1 210 VAL 210 211 211 VAL VAL B . n A 1 211 LYS 211 212 212 LYS LYS B . n A 1 212 ASN 212 213 213 ASN ASN B . n A 1 213 GLN 213 214 214 GLN GLN B . n A 1 214 GLY 214 215 215 GLY GLY B . n A 1 215 ALA 215 216 216 ALA ALA B . n A 1 216 GLU 216 217 217 GLU GLU B . n A 1 217 LEU 217 218 218 LEU LEU B . n A 1 218 ILE 218 219 219 ILE ILE B . n A 1 219 GLN 219 220 220 GLN GLN B . n A 1 220 PRO 220 221 221 PRO PRO B . n A 1 221 VAL 221 222 222 VAL VAL B . n A 1 222 LEU 222 223 223 LEU LEU B . n A 1 223 GLU 223 224 224 GLU GLU B . n A 1 224 VAL 224 225 225 VAL VAL B . n A 1 225 LEU 225 226 226 LEU LEU B . n A 1 226 PHE 226 227 227 PHE PHE B . n A 1 227 GLN 227 228 ? ? ? B . n B 2 1 DG 1 -3 ? ? ? A . n B 2 2 DA 2 -2 ? ? ? A . n B 2 3 DT 3 -1 -1 DT DT A . n B 2 4 DT 4 0 0 DT DT A . n B 2 5 DC 5 1 1 DC DC A . n B 2 6 DG 6 2 ? ? ? A . n B 2 7 DT 7 3 ? ? ? A . n B 2 8 DC 8 4 ? ? ? A . n B 2 9 DG 9 5 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PED 1 301 2 PED PED B . D 4 GOL 1 302 1 GOL GOL B . E 5 HOH 1 401 146 HOH HOH B . E 5 HOH 2 402 108 HOH HOH B . E 5 HOH 3 403 237 HOH HOH B . E 5 HOH 4 404 33 HOH HOH B . E 5 HOH 5 405 152 HOH HOH B . E 5 HOH 6 406 163 HOH HOH B . E 5 HOH 7 407 206 HOH HOH B . E 5 HOH 8 408 233 HOH HOH B . E 5 HOH 9 409 109 HOH HOH B . E 5 HOH 10 410 85 HOH HOH B . E 5 HOH 11 411 188 HOH HOH B . E 5 HOH 12 412 223 HOH HOH B . E 5 HOH 13 413 214 HOH HOH B . E 5 HOH 14 414 184 HOH HOH B . E 5 HOH 15 415 144 HOH HOH B . E 5 HOH 16 416 302 HOH HOH B . E 5 HOH 17 417 174 HOH HOH B . E 5 HOH 18 418 295 HOH HOH B . E 5 HOH 19 419 168 HOH HOH B . E 5 HOH 20 420 166 HOH HOH B . E 5 HOH 21 421 103 HOH HOH B . E 5 HOH 22 422 64 HOH HOH B . E 5 HOH 23 423 141 HOH HOH B . E 5 HOH 24 424 47 HOH HOH B . E 5 HOH 25 425 344 HOH HOH B . E 5 HOH 26 426 65 HOH HOH B . E 5 HOH 27 427 191 HOH HOH B . E 5 HOH 28 428 32 HOH HOH B . E 5 HOH 29 429 272 HOH HOH B . E 5 HOH 30 430 202 HOH HOH B . E 5 HOH 31 431 328 HOH HOH B . E 5 HOH 32 432 29 HOH HOH B . E 5 HOH 33 433 176 HOH HOH B . E 5 HOH 34 434 41 HOH HOH B . E 5 HOH 35 435 110 HOH HOH B . E 5 HOH 36 436 161 HOH HOH B . E 5 HOH 37 437 63 HOH HOH B . E 5 HOH 38 438 207 HOH HOH B . E 5 HOH 39 439 113 HOH HOH B . E 5 HOH 40 440 58 HOH HOH B . E 5 HOH 41 441 97 HOH HOH B . E 5 HOH 42 442 107 HOH HOH B . E 5 HOH 43 443 89 HOH HOH B . E 5 HOH 44 444 327 HOH HOH B . E 5 HOH 45 445 6 HOH HOH B . E 5 HOH 46 446 7 HOH HOH B . E 5 HOH 47 447 72 HOH HOH B . E 5 HOH 48 448 149 HOH HOH B . E 5 HOH 49 449 269 HOH HOH B . E 5 HOH 50 450 95 HOH HOH B . E 5 HOH 51 451 12 HOH HOH B . E 5 HOH 52 452 3 HOH HOH B . E 5 HOH 53 453 115 HOH HOH B . E 5 HOH 54 454 77 HOH HOH B . E 5 HOH 55 455 56 HOH HOH B . E 5 HOH 56 456 82 HOH HOH B . E 5 HOH 57 457 216 HOH HOH B . E 5 HOH 58 458 38 HOH HOH B . E 5 HOH 59 459 217 HOH HOH B . E 5 HOH 60 460 100 HOH HOH B . E 5 HOH 61 461 143 HOH HOH B . E 5 HOH 62 462 88 HOH HOH B . E 5 HOH 63 463 157 HOH HOH B . E 5 HOH 64 464 224 HOH HOH B . E 5 HOH 65 465 154 HOH HOH B . E 5 HOH 66 466 130 HOH HOH B . E 5 HOH 67 467 11 HOH HOH B . E 5 HOH 68 468 84 HOH HOH B . E 5 HOH 69 469 134 HOH HOH B . E 5 HOH 70 470 16 HOH HOH B . E 5 HOH 71 471 128 HOH HOH B . E 5 HOH 72 472 239 HOH HOH B . E 5 HOH 73 473 186 HOH HOH B . E 5 HOH 74 474 9 HOH HOH B . E 5 HOH 75 475 104 HOH HOH B . E 5 HOH 76 476 28 HOH HOH B . E 5 HOH 77 477 197 HOH HOH B . E 5 HOH 78 478 264 HOH HOH B . E 5 HOH 79 479 5 HOH HOH B . E 5 HOH 80 480 23 HOH HOH B . E 5 HOH 81 481 198 HOH HOH B . E 5 HOH 82 482 1 HOH HOH B . E 5 HOH 83 483 83 HOH HOH B . E 5 HOH 84 484 94 HOH HOH B . E 5 HOH 85 485 75 HOH HOH B . E 5 HOH 86 486 14 HOH HOH B . E 5 HOH 87 487 68 HOH HOH B . E 5 HOH 88 488 263 HOH HOH B . E 5 HOH 89 489 36 HOH HOH B . E 5 HOH 90 490 246 HOH HOH B . E 5 HOH 91 491 196 HOH HOH B . E 5 HOH 92 492 35 HOH HOH B . E 5 HOH 93 493 18 HOH HOH B . E 5 HOH 94 494 10 HOH HOH B . E 5 HOH 95 495 52 HOH HOH B . E 5 HOH 96 496 24 HOH HOH B . E 5 HOH 97 497 76 HOH HOH B . E 5 HOH 98 498 102 HOH HOH B . E 5 HOH 99 499 34 HOH HOH B . E 5 HOH 100 500 8 HOH HOH B . E 5 HOH 101 501 2 HOH HOH B . E 5 HOH 102 502 213 HOH HOH B . E 5 HOH 103 503 182 HOH HOH B . E 5 HOH 104 504 145 HOH HOH B . E 5 HOH 105 505 177 HOH HOH B . E 5 HOH 106 506 4 HOH HOH B . E 5 HOH 107 507 123 HOH HOH B . E 5 HOH 108 508 117 HOH HOH B . E 5 HOH 109 509 22 HOH HOH B . E 5 HOH 110 510 183 HOH HOH B . E 5 HOH 111 511 185 HOH HOH B . E 5 HOH 112 512 310 HOH HOH B . E 5 HOH 113 513 42 HOH HOH B . E 5 HOH 114 514 37 HOH HOH B . E 5 HOH 115 515 71 HOH HOH B . E 5 HOH 116 516 173 HOH HOH B . E 5 HOH 117 517 180 HOH HOH B . E 5 HOH 118 518 19 HOH HOH B . E 5 HOH 119 519 45 HOH HOH B . E 5 HOH 120 520 96 HOH HOH B . E 5 HOH 121 521 13 HOH HOH B . E 5 HOH 122 522 106 HOH HOH B . E 5 HOH 123 523 17 HOH HOH B . E 5 HOH 124 524 101 HOH HOH B . E 5 HOH 125 525 44 HOH HOH B . E 5 HOH 126 526 260 HOH HOH B . E 5 HOH 127 527 55 HOH HOH B . E 5 HOH 128 528 105 HOH HOH B . E 5 HOH 129 529 267 HOH HOH B . E 5 HOH 130 530 167 HOH HOH B . E 5 HOH 131 531 61 HOH HOH B . E 5 HOH 132 532 147 HOH HOH B . E 5 HOH 133 533 138 HOH HOH B . E 5 HOH 134 534 86 HOH HOH B . E 5 HOH 135 535 73 HOH HOH B . E 5 HOH 136 536 79 HOH HOH B . E 5 HOH 137 537 25 HOH HOH B . E 5 HOH 138 538 238 HOH HOH B . E 5 HOH 139 539 140 HOH HOH B . E 5 HOH 140 540 234 HOH HOH B . E 5 HOH 141 541 231 HOH HOH B . E 5 HOH 142 542 179 HOH HOH B . E 5 HOH 143 543 150 HOH HOH B . E 5 HOH 144 544 20 HOH HOH B . E 5 HOH 145 545 114 HOH HOH B . E 5 HOH 146 546 50 HOH HOH B . E 5 HOH 147 547 60 HOH HOH B . E 5 HOH 148 548 43 HOH HOH B . E 5 HOH 149 549 215 HOH HOH B . E 5 HOH 150 550 322 HOH HOH B . E 5 HOH 151 551 287 HOH HOH B . E 5 HOH 152 552 30 HOH HOH B . E 5 HOH 153 553 162 HOH HOH B . E 5 HOH 154 554 126 HOH HOH B . E 5 HOH 155 555 15 HOH HOH B . E 5 HOH 156 556 67 HOH HOH B . E 5 HOH 157 557 306 HOH HOH B . E 5 HOH 158 558 127 HOH HOH B . E 5 HOH 159 559 121 HOH HOH B . E 5 HOH 160 560 87 HOH HOH B . E 5 HOH 161 561 175 HOH HOH B . E 5 HOH 162 562 136 HOH HOH B . E 5 HOH 163 563 211 HOH HOH B . E 5 HOH 164 564 125 HOH HOH B . E 5 HOH 165 565 21 HOH HOH B . E 5 HOH 166 566 91 HOH HOH B . E 5 HOH 167 567 93 HOH HOH B . E 5 HOH 168 568 40 HOH HOH B . E 5 HOH 169 569 248 HOH HOH B . E 5 HOH 170 570 74 HOH HOH B . E 5 HOH 171 571 111 HOH HOH B . E 5 HOH 172 572 81 HOH HOH B . E 5 HOH 173 573 78 HOH HOH B . E 5 HOH 174 574 98 HOH HOH B . E 5 HOH 175 575 341 HOH HOH B . E 5 HOH 176 576 255 HOH HOH B . E 5 HOH 177 577 51 HOH HOH B . E 5 HOH 178 578 66 HOH HOH B . E 5 HOH 179 579 335 HOH HOH B . E 5 HOH 180 580 62 HOH HOH B . E 5 HOH 181 581 118 HOH HOH B . E 5 HOH 182 582 230 HOH HOH B . E 5 HOH 183 583 266 HOH HOH B . E 5 HOH 184 584 80 HOH HOH B . E 5 HOH 185 585 321 HOH HOH B . E 5 HOH 186 586 308 HOH HOH B . E 5 HOH 187 587 131 HOH HOH B . E 5 HOH 188 588 49 HOH HOH B . E 5 HOH 189 589 26 HOH HOH B . E 5 HOH 190 590 244 HOH HOH B . E 5 HOH 191 591 220 HOH HOH B . E 5 HOH 192 592 324 HOH HOH B . E 5 HOH 193 593 69 HOH HOH B . E 5 HOH 194 594 120 HOH HOH B . E 5 HOH 195 595 193 HOH HOH B . E 5 HOH 196 596 275 HOH HOH B . E 5 HOH 197 597 165 HOH HOH B . E 5 HOH 198 598 122 HOH HOH B . E 5 HOH 199 599 279 HOH HOH B . E 5 HOH 200 600 170 HOH HOH B . E 5 HOH 201 601 256 HOH HOH B . E 5 HOH 202 602 151 HOH HOH B . E 5 HOH 203 603 221 HOH HOH B . E 5 HOH 204 604 250 HOH HOH B . E 5 HOH 205 605 251 HOH HOH B . E 5 HOH 206 606 160 HOH HOH B . E 5 HOH 207 607 204 HOH HOH B . E 5 HOH 208 608 90 HOH HOH B . E 5 HOH 209 609 195 HOH HOH B . E 5 HOH 210 610 225 HOH HOH B . E 5 HOH 211 611 92 HOH HOH B . E 5 HOH 212 612 129 HOH HOH B . E 5 HOH 213 613 156 HOH HOH B . E 5 HOH 214 614 258 HOH HOH B . E 5 HOH 215 615 164 HOH HOH B . E 5 HOH 216 616 273 HOH HOH B . E 5 HOH 217 617 46 HOH HOH B . E 5 HOH 218 618 142 HOH HOH B . E 5 HOH 219 619 329 HOH HOH B . E 5 HOH 220 620 169 HOH HOH B . E 5 HOH 221 621 283 HOH HOH B . E 5 HOH 222 622 252 HOH HOH B . E 5 HOH 223 623 189 HOH HOH B . E 5 HOH 224 624 305 HOH HOH B . E 5 HOH 225 625 229 HOH HOH B . E 5 HOH 226 626 298 HOH HOH B . E 5 HOH 227 627 280 HOH HOH B . E 5 HOH 228 628 172 HOH HOH B . E 5 HOH 229 629 187 HOH HOH B . E 5 HOH 230 630 158 HOH HOH B . E 5 HOH 231 631 190 HOH HOH B . E 5 HOH 232 632 159 HOH HOH B . E 5 HOH 233 633 205 HOH HOH B . E 5 HOH 234 634 330 HOH HOH B . E 5 HOH 235 635 236 HOH HOH B . E 5 HOH 236 636 284 HOH HOH B . E 5 HOH 237 637 201 HOH HOH B . E 5 HOH 238 638 282 HOH HOH B . E 5 HOH 239 639 226 HOH HOH B . E 5 HOH 240 640 303 HOH HOH B . E 5 HOH 241 641 265 HOH HOH B . E 5 HOH 242 642 155 HOH HOH B . E 5 HOH 243 643 178 HOH HOH B . E 5 HOH 244 644 300 HOH HOH B . E 5 HOH 245 645 222 HOH HOH B . E 5 HOH 246 646 57 HOH HOH B . E 5 HOH 247 647 27 HOH HOH B . E 5 HOH 248 648 39 HOH HOH B . E 5 HOH 249 649 171 HOH HOH B . E 5 HOH 250 650 326 HOH HOH B . E 5 HOH 251 651 54 HOH HOH B . E 5 HOH 252 652 203 HOH HOH B . E 5 HOH 253 653 242 HOH HOH B . E 5 HOH 254 654 124 HOH HOH B . E 5 HOH 255 655 212 HOH HOH B . E 5 HOH 256 656 241 HOH HOH B . E 5 HOH 257 657 262 HOH HOH B . E 5 HOH 258 658 253 HOH HOH B . E 5 HOH 259 659 200 HOH HOH B . E 5 HOH 260 660 343 HOH HOH B . E 5 HOH 261 661 261 HOH HOH B . E 5 HOH 262 662 199 HOH HOH B . E 5 HOH 263 663 132 HOH HOH B . E 5 HOH 264 664 153 HOH HOH B . E 5 HOH 265 665 281 HOH HOH B . E 5 HOH 266 666 289 HOH HOH B . E 5 HOH 267 667 342 HOH HOH B . E 5 HOH 268 668 309 HOH HOH B . E 5 HOH 269 669 249 HOH HOH B . E 5 HOH 270 670 299 HOH HOH B . E 5 HOH 271 671 268 HOH HOH B . E 5 HOH 272 672 53 HOH HOH B . E 5 HOH 273 673 116 HOH HOH B . E 5 HOH 274 674 245 HOH HOH B . E 5 HOH 275 675 290 HOH HOH B . E 5 HOH 276 676 316 HOH HOH B . E 5 HOH 277 677 209 HOH HOH B . E 5 HOH 278 678 257 HOH HOH B . E 5 HOH 279 679 296 HOH HOH B . E 5 HOH 280 680 304 HOH HOH B . E 5 HOH 281 681 323 HOH HOH B . E 5 HOH 282 682 291 HOH HOH B . E 5 HOH 283 683 181 HOH HOH B . E 5 HOH 284 684 278 HOH HOH B . E 5 HOH 285 685 194 HOH HOH B . E 5 HOH 286 686 254 HOH HOH B . E 5 HOH 287 687 119 HOH HOH B . E 5 HOH 288 688 232 HOH HOH B . E 5 HOH 289 689 285 HOH HOH B . E 5 HOH 290 690 228 HOH HOH B . E 5 HOH 291 691 210 HOH HOH B . E 5 HOH 292 692 293 HOH HOH B . E 5 HOH 293 693 315 HOH HOH B . E 5 HOH 294 694 148 HOH HOH B . E 5 HOH 295 695 139 HOH HOH B . E 5 HOH 296 696 112 HOH HOH B . E 5 HOH 297 697 133 HOH HOH B . E 5 HOH 298 698 325 HOH HOH B . E 5 HOH 299 699 270 HOH HOH B . E 5 HOH 300 700 218 HOH HOH B . E 5 HOH 301 701 292 HOH HOH B . E 5 HOH 302 702 59 HOH HOH B . E 5 HOH 303 703 48 HOH HOH B . E 5 HOH 304 704 259 HOH HOH B . E 5 HOH 305 705 240 HOH HOH B . E 5 HOH 306 706 208 HOH HOH B . E 5 HOH 307 707 235 HOH HOH B . E 5 HOH 308 708 219 HOH HOH B . E 5 HOH 309 709 247 HOH HOH B . F 5 HOH 1 101 99 HOH HOH A . F 5 HOH 2 102 301 HOH HOH A . F 5 HOH 3 103 135 HOH HOH A . F 5 HOH 4 104 277 HOH HOH A . F 5 HOH 5 105 70 HOH HOH A . F 5 HOH 6 106 271 HOH HOH A . F 5 HOH 7 107 243 HOH HOH A . F 5 HOH 8 108 313 HOH HOH A . F 5 HOH 9 109 227 HOH HOH A . F 5 HOH 10 110 286 HOH HOH A . F 5 HOH 11 111 320 HOH HOH A . F 5 HOH 12 112 137 HOH HOH A . F 5 HOH 13 113 288 HOH HOH A . F 5 HOH 14 114 192 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1450 ? 1 MORE -7 ? 1 'SSA (A^2)' 10680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-07 2 'Structure model' 1 1 2020-01-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.7151 _pdbx_refine_tls.origin_y 5.6189 _pdbx_refine_tls.origin_z 13.3573 _pdbx_refine_tls.T[1][1] 0.0905 _pdbx_refine_tls.T[2][2] 0.0965 _pdbx_refine_tls.T[3][3] 0.0957 _pdbx_refine_tls.T[1][2] -0.0034 _pdbx_refine_tls.T[1][3] -0.0021 _pdbx_refine_tls.T[2][3] 0.0040 _pdbx_refine_tls.L[1][1] 0.5491 _pdbx_refine_tls.L[2][2] 0.4680 _pdbx_refine_tls.L[3][3] 0.7753 _pdbx_refine_tls.L[1][2] -0.1800 _pdbx_refine_tls.L[1][3] -0.0953 _pdbx_refine_tls.L[2][3] 0.0984 _pdbx_refine_tls.S[1][1] 0.0023 _pdbx_refine_tls.S[1][2] 0.0303 _pdbx_refine_tls.S[1][3] -0.0294 _pdbx_refine_tls.S[2][1] -0.0300 _pdbx_refine_tls.S[2][2] 0.0004 _pdbx_refine_tls.S[2][3] 0.0517 _pdbx_refine_tls.S[3][1] 0.0140 _pdbx_refine_tls.S[3][2] -0.1142 _pdbx_refine_tls.S[3][3] 0.0065 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6KIJ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG B CYS 2 ? ? "C1'" B PED 301 ? ? 1.77 2 1 O B HOH 425 ? ? O B HOH 590 ? ? 2.03 3 1 O B HOH 590 ? ? O B HOH 616 ? ? 2.08 4 1 O B HOH 526 ? ? O B HOH 592 ? ? 2.15 5 1 O B HOH 550 ? ? O B HOH 579 ? ? 2.17 6 1 O B HOH 536 ? ? O B HOH 667 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 647 ? ? 1_555 O B HOH 660 ? ? 2_646 2.01 2 1 O B HOH 427 ? ? 1_555 O B HOH 660 ? ? 2_646 2.08 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 2 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 102.84 _pdbx_validate_rmsd_angle.angle_target_value 114.00 _pdbx_validate_rmsd_angle.angle_deviation -11.16 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA B 142 ? ? -138.25 -41.29 2 1 GLN B 154 ? ? 56.76 -142.71 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 706 ? 5.87 . 2 1 O ? B HOH 707 ? 5.94 . 3 1 O ? B HOH 708 ? 6.75 . 4 1 O ? B HOH 709 ? 6.84 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLN 228 ? A GLN 227 2 1 Y 1 A DG -3 ? B DG 1 3 1 Y 1 A DA -2 ? B DA 2 4 1 Y 1 A DG 2 ? B DG 6 5 1 Y 1 A DT 3 ? B DT 7 6 1 Y 1 A DC 4 ? B DC 8 7 1 Y 1 A DG 5 ? B DG 9 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Science and Technology (China)' China 2018YFC1004500 1 'National Natural Science Foundation of China' China 'the Thousand Young Talents Program' 2 'National Natural Science Foundation of China' China 31800619 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PED _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PED _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 PENTANE-3,4-DIOL-5-PHOSPHATE PED 4 GLYCEROL GOL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #