HEADER DNA BINDING PROTEIN 18-JUL-19 6KIJ TITLE CRYSTAL STRUCTURE OF YEDK WITH SSDNA CONTAINING AN ABASIC SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOS RESPONSE-ASSOCIATED PROTEIN; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: E.COLI YEDK; COMPND 5 EC: 3.4.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*AP*TP*TP*CP*GP*TP*CP*G)-3'); COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEDK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SOURCE 5 SAMEA3472108_01185, SAMEA3752559_04370; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562 KEYWDS DNA REPAIR, ABASIC SITE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.WANG,H.BAO,H.HUANG REVDAT 3 22-NOV-23 6KIJ 1 LINK REVDAT 2 22-JAN-20 6KIJ 1 JRNL REVDAT 1 07-AUG-19 6KIJ 0 JRNL AUTH N.WANG,H.BAO,L.CHEN,Y.LIU,Y.LI,B.WU,H.HUANG JRNL TITL MOLECULAR BASIS OF ABASIC SITE SENSING IN SINGLE-STRANDED JRNL TITL 2 DNA BY THE SRAP DOMAIN OF E. COLI YEDK. JRNL REF NUCLEIC ACIDS RES. V. 47 10388 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31504793 JRNL DOI 10.1093/NAR/GKZ744 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 29992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.1740 - 3.5080 0.99 2726 140 0.1391 0.1476 REMARK 3 2 3.5080 - 2.7859 0.99 2647 146 0.1423 0.1718 REMARK 3 3 2.7859 - 2.4342 1.00 2673 126 0.1541 0.1874 REMARK 3 4 2.4342 - 2.2118 0.99 2625 136 0.1471 0.1817 REMARK 3 5 2.2118 - 2.0534 1.00 2619 147 0.1463 0.1959 REMARK 3 6 2.0534 - 1.9324 1.00 2668 137 0.1432 0.1774 REMARK 3 7 1.9324 - 1.8357 0.99 2588 141 0.1597 0.1936 REMARK 3 8 1.8357 - 1.7558 0.99 2609 145 0.1712 0.2129 REMARK 3 9 1.7558 - 1.6882 0.99 2608 138 0.1800 0.2157 REMARK 3 10 1.6882 - 1.6300 0.96 2478 152 0.2018 0.2531 REMARK 3 11 1.6300 - 1.5800 0.85 2205 138 0.2165 0.2487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1943 REMARK 3 ANGLE : 0.901 2651 REMARK 3 CHIRALITY : 0.054 274 REMARK 3 PLANARITY : 0.005 340 REMARK 3 DIHEDRAL : 12.876 1571 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.7151 5.6189 13.3573 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.0965 REMARK 3 T33: 0.0957 T12: -0.0034 REMARK 3 T13: -0.0021 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.5491 L22: 0.4680 REMARK 3 L33: 0.7753 L12: -0.1800 REMARK 3 L13: -0.0953 L23: 0.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0303 S13: -0.0294 REMARK 3 S21: -0.0300 S22: 0.0004 S23: 0.0517 REMARK 3 S31: 0.0140 S32: -0.1142 S33: 0.0065 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.579 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FORMATE 20% W/V PEG3350, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.04000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 228 REMARK 465 DG A -3 REMARK 465 DA A -2 REMARK 465 DG A 2 REMARK 465 DT A 3 REMARK 465 DC A 4 REMARK 465 DG A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 2 C1' PED B 301 1.77 REMARK 500 O HOH B 425 O HOH B 590 2.03 REMARK 500 O HOH B 590 O HOH B 616 2.08 REMARK 500 O HOH B 526 O HOH B 592 2.15 REMARK 500 O HOH B 550 O HOH B 579 2.17 REMARK 500 O HOH B 536 O HOH B 667 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 647 O HOH B 660 2646 2.01 REMARK 500 O HOH B 427 O HOH B 660 2646 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 2 CA - CB - SG ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 142 -41.29 -138.25 REMARK 500 GLN B 154 -142.71 56.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 706 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 707 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 709 DISTANCE = 6.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PED B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 DBREF1 6KIJ B 2 222 UNP A0A2S5ZH06_ECOLX DBREF2 6KIJ B A0A2S5ZH06 2 222 DBREF 6KIJ A -3 5 PDB 6KIJ 6KIJ -3 5 SEQADV 6KIJ LEU B 223 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KIJ GLU B 224 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KIJ VAL B 225 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KIJ LEU B 226 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KIJ PHE B 227 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KIJ GLN B 228 UNP A0A2S5ZH0 EXPRESSION TAG SEQRES 1 B 227 CYS GLY ARG PHE ALA GLN SER GLN THR ARG GLU ASP TYR SEQRES 2 B 227 LEU ALA LEU LEU ALA GLU ASP ILE GLU ARG ASP ILE PRO SEQRES 3 B 227 TYR ASP PRO GLU PRO ILE GLY ARG TYR ASN VAL ALA PRO SEQRES 4 B 227 GLY THR LYS VAL LEU LEU LEU SER GLU ARG ASP GLU HIS SEQRES 5 B 227 LEU HIS LEU ASP PRO VAL PHE TRP GLY TYR ALA PRO GLY SEQRES 6 B 227 TRP TRP ASP LYS PRO PRO LEU ILE ASN ALA ARG VAL GLU SEQRES 7 B 227 THR ALA ALA THR SER ARG MET PHE LYS PRO LEU TRP GLN SEQRES 8 B 227 HIS GLY ARG ALA ILE CYS PHE ALA ASP GLY TRP PHE GLU SEQRES 9 B 227 TRP LYS LYS GLU GLY ASP LYS LYS GLN PRO PHE PHE ILE SEQRES 10 B 227 TYR ARG ALA ASP GLY GLN PRO ILE PHE MET ALA ALA ILE SEQRES 11 B 227 GLY SER THR PRO PHE GLU ARG GLY ASP GLU ALA GLU GLY SEQRES 12 B 227 PHE LEU ILE VAL THR ALA ALA ALA ASP GLN GLY LEU VAL SEQRES 13 B 227 ASP ILE HIS ASP ARG ARG PRO LEU VAL LEU SER PRO GLU SEQRES 14 B 227 ALA ALA ARG GLU TRP MET ARG GLN GLU ILE SER GLY LYS SEQRES 15 B 227 GLU ALA SER GLU ILE ALA ALA SER GLY CYS VAL PRO ALA SEQRES 16 B 227 ASN GLN PHE SER TRP HIS PRO VAL SER ARG ALA VAL GLY SEQRES 17 B 227 ASN VAL LYS ASN GLN GLY ALA GLU LEU ILE GLN PRO VAL SEQRES 18 B 227 LEU GLU VAL LEU PHE GLN SEQRES 1 A 9 DG DA DT DT DC DG DT DC DG HET PED B 301 11 HET GOL B 302 6 HETNAM PED PENTANE-3,4-DIOL-5-PHOSPHATE HETNAM GOL GLYCEROL HETSYN PED OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PED C5 H13 O6 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *323(H2 O) HELIX 1 AA1 THR B 10 ALA B 16 1 7 HELIX 2 AA2 GLU B 20 ARG B 24 5 5 HELIX 3 AA3 PHE B 87 GLY B 94 1 8 HELIX 4 AA4 PRO B 135 GLY B 139 5 5 HELIX 5 AA5 ASP B 153 ILE B 159 5 7 HELIX 6 AA6 SER B 168 ARG B 177 1 10 HELIX 7 AA7 SER B 181 CYS B 193 1 13 HELIX 8 AA8 PRO B 195 ASN B 197 5 3 HELIX 9 AA9 SER B 205 ASN B 210 5 6 HELIX 10 AB1 GLY B 215 GLN B 220 5 6 HELIX 11 AB2 LEU B 223 PHE B 227 5 5 SHEET 1 AA1 5 ARG B 35 VAL B 38 0 SHEET 2 AA1 5 ARG B 4 GLN B 7 -1 N GLN B 7 O ARG B 35 SHEET 3 AA1 5 GLY B 102 GLU B 109 -1 O GLY B 102 N ALA B 6 SHEET 4 AA1 5 LYS B 112 ARG B 120 -1 O LYS B 112 N GLU B 109 SHEET 5 AA1 5 PHE B 199 PRO B 203 -1 O SER B 200 N TYR B 119 SHEET 1 AA2 2 LYS B 43 ARG B 50 0 SHEET 2 AA2 2 HIS B 53 PHE B 60 -1 O HIS B 55 N SER B 48 SHEET 1 AA3 4 ASN B 75 ARG B 77 0 SHEET 2 AA3 4 PHE B 145 ALA B 151 1 O THR B 149 N ALA B 76 SHEET 3 AA3 4 ILE B 126 GLY B 132 -1 N ILE B 131 O LEU B 146 SHEET 4 AA3 4 ARG B 162 PRO B 164 0 SHEET 1 AA4 4 ARG B 95 ALA B 100 0 SHEET 2 AA4 4 ILE B 126 GLY B 132 -1 O ILE B 126 N ALA B 100 SHEET 3 AA4 4 PHE B 145 ALA B 151 -1 O LEU B 146 N ILE B 131 SHEET 4 AA4 4 VAL B 166 LEU B 167 0 LINK N CYS B 2 C1' PED B 301 1555 1555 1.48 LINK P PED B 301 O3' DC A 1 1555 1555 1.56 CISPEP 1 THR B 134 PRO B 135 0 -0.42 SITE 1 AC1 11 DC A 1 CYS B 2 GLY B 3 ASN B 75 SITE 2 AC1 11 ARG B 77 THR B 149 HIS B 160 ARG B 162 SITE 3 AC1 11 HOH B 462 HOH B 517 HOH B 534 SITE 1 AC2 3 ASP B 21 TYR B 28 HOH B 602 CRYST1 47.444 44.080 55.148 90.00 102.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021077 0.000000 0.004609 0.00000 SCALE2 0.000000 0.022686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018562 0.00000