HEADER MOTOR PROTEIN/STRUCTURAL PROTEIN 19-JUL-19 6KIO TITLE COMPLEX OF YEAST CYTOPLASMIC DYNEIN MTBD-HIGH AND MT WITHOUT DTT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN BETA CHAIN; COMPND 3 CHAIN: b; COMPND 4 SYNONYM: BETA-TUBULIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DYNEIN HEAVY CHAIN, CYTOPLASMIC; COMPND 7 CHAIN: M; COMPND 8 SYNONYM: DYNEIN HEAVY CHAIN,CYTOSOLIC,DYHC; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TUBULIN ALPHA-1A CHAIN; COMPND 12 CHAIN: a SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 559292; SOURCE 9 STRAIN: S288C; SOURCE 10 GENE: DYN1, DHC1, YKR054C; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 15 ORGANISM_COMMON: PIG; SOURCE 16 ORGANISM_TAXID: 9823 KEYWDS MOTOR PROTEIN-STRUCTURAL PROTEIN COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.KOMORI,N.NISHIDA,I.SHIMADA,M.KIKKAWA REVDAT 2 11-MAR-20 6KIO 1 JRNL REVDAT 1 04-MAR-20 6KIO 0 JRNL AUTH N.NISHIDA,Y.KOMORI,O.TAKARADA,A.WATANABE,S.TAMURA,S.KUBO, JRNL AUTH 2 I.SHIMADA,M.KIKKAWA JRNL TITL STRUCTURAL BASIS FOR TWO-WAY COMMUNICATION BETWEEN DYNEIN JRNL TITL 2 AND MICROTUBULES. JRNL REF NAT COMMUN V. 11 1038 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32098965 JRNL DOI 10.1038/S41467-020-14842-8 REMARK 2 REMARK 2 RESOLUTION. 3.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GCTF, MDFF, RELION, FREALIGN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.940 REMARK 3 NUMBER OF PARTICLES : 58999 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: FSCTRUE WAS CALCULATED TO VALIDATE THE RESOLUTION. REMARK 4 REMARK 4 6KIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013043. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : MTBD-HIGH/MT COMPLEX WITHOUT REMARK 245 DTT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1820 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3250.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 54.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: b, M, a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER b 126 OE2 GLU b 127 1.54 REMARK 500 HG1 THR b 287 OE2 GLU b 290 1.54 REMARK 500 OD1 ASP b 427 HZ1 LYS M 3117 1.55 REMARK 500 OE2 GLU M 3122 HH22 ARG a 1376 1.55 REMARK 500 H SER a 1261 OE2 GLU a 1264 1.56 REMARK 500 OE2 GLU b 200 HH TYR b 202 1.56 REMARK 500 HH12 ARG a 1002 OE2 GLU a 1003 1.56 REMARK 500 O TYR b 408 H GLU b 411 1.57 REMARK 500 OD2 ASP b 163 HE ARG b 164 1.57 REMARK 500 HH21 ARG M 3201 OE1 GLU a 1389 1.58 REMARK 500 HZ2 LYS b 352 O THR b 353 1.58 REMARK 500 O GLU M 3186 HG SER M 3190 1.58 REMARK 500 OE1 GLU b 3 HH11 ARG b 64 1.58 REMARK 500 H3 ARG b 2 O CYS b 131 1.59 REMARK 500 O GLU b 125 HG SER b 128 1.59 REMARK 500 HZ3 LYS a 1070 OE2 GLU a 1071 1.59 REMARK 500 OD1 ASP a 1280 HH12 ARG a 1282 1.59 REMARK 500 O VAL b 182 H TYR b 185 1.60 REMARK 500 OD1 ASP b 251 HZ3 LYS b 254 1.60 REMARK 500 HG1 THR b 223 OD1 ASP b 226 1.60 REMARK 500 O THR b 74 HG SER b 77 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS b 6 CB HIS b 6 CG -0.110 REMARK 500 TRP b 21 NE1 TRP b 21 CE2 -0.101 REMARK 500 ASN b 50 CA ASN b 50 C -0.181 REMARK 500 PRO b 63 CA PRO b 63 C -0.146 REMARK 500 PHE b 244 CB PHE b 244 CG -0.103 REMARK 500 MET b 269 C PRO b 270 N -0.153 REMARK 500 VAL a1014 CA VAL a1014 CB -0.134 REMARK 500 PHE a1112 CB PHE a1112 CG -0.112 REMARK 500 TYR a1146 CB TYR a1146 CG -0.091 REMARK 500 PHE a1229 CB PHE a1229 CG -0.120 REMARK 500 PRO a1248 CD PRO a1248 N -0.087 REMARK 500 HIS a1257 CB HIS a1257 CG -0.098 REMARK 500 GLY a1390 CA GLY a1390 C -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG b 2 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 HIS b 6 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 HIS b 37 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG b 48 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASN b 50 C - N - CA ANGL. DEV. = 21.0 DEGREES REMARK 500 VAL b 51 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG b 79 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG b 79 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG b 123 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 MET b 149 CG - SD - CE ANGL. DEV. = -13.3 DEGREES REMARK 500 PHE b 214 N - CA - CB ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG b 215 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 TYR b 224 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 VAL b 231 CA - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 THR b 240 N - CA - CB ANGL. DEV. = 15.7 DEGREES REMARK 500 CYS b 241 CA - CB - SG ANGL. DEV. = -11.3 DEGREES REMARK 500 LEU b 252 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG b 253 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG b 253 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG b 264 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ALA b 273 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG b 278 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG b 278 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR b 283 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 TYR b 283 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP b 297 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG b 308 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG b 308 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET b 325 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 TYR b 342 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 TYR b 342 CB - CG - CD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 PHE b 343 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 PHE b 388 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 PHE b 388 CB - CG - CD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG b 390 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG b 400 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG b 401 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE b 404 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 MET b 413 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 VAL b 429 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 TYR b 432 CA - CB - CG ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG M3110 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG M3159 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG M3181 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASN M3193 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG a1002 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 GLN a1031 CA - C - N ANGL. DEV. = 21.3 DEGREES REMARK 500 ARG a1038 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG a1053 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TYR a1057 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 88 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU b 3 163.02 -44.14 REMARK 500 VAL b 23 -84.85 -58.19 REMARK 500 ILE b 24 -49.32 -25.24 REMARK 500 HIS b 28 19.89 -147.63 REMARK 500 ASP b 31 178.87 -56.80 REMARK 500 HIS b 37 21.93 -143.21 REMARK 500 ASN b 50 -50.92 -15.63 REMARK 500 ALA b 57 62.95 -168.86 REMARK 500 ASN b 59 -65.86 -143.81 REMARK 500 THR b 74 -73.07 -56.15 REMARK 500 GLN b 96 -47.37 179.50 REMARK 500 ALA b 99 50.86 -91.03 REMARK 500 ASN b 101 73.95 -69.26 REMARK 500 TYR b 108 -148.25 -137.03 REMARK 500 THR b 109 -89.70 42.74 REMARK 500 VAL b 118 -62.29 -102.88 REMARK 500 SER b 128 -70.97 -65.92 REMARK 500 ASP b 130 -145.02 54.42 REMARK 500 HIS b 139 172.29 177.48 REMARK 500 THR b 145 -14.41 -49.86 REMARK 500 ARG b 158 11.84 -66.81 REMARK 500 PRO b 162 28.51 -73.22 REMARK 500 SER b 174 80.25 -55.59 REMARK 500 PRO b 175 -16.98 -42.40 REMARK 500 ASP b 179 11.42 -158.63 REMARK 500 GLU b 183 -69.98 -5.20 REMARK 500 ALA b 187 -72.04 -75.23 REMARK 500 VAL b 195 -0.68 -54.26 REMARK 500 ASN b 197 18.01 -142.82 REMARK 500 GLU b 200 117.80 -162.26 REMARK 500 VAL b 238 -85.90 -63.51 REMARK 500 THR b 239 -87.39 -71.69 REMARK 500 THR b 240 -52.04 -15.34 REMARK 500 ARG b 243 34.70 -92.05 REMARK 500 LEU b 248 89.63 -174.11 REMARK 500 LEU b 252 -59.79 -4.49 REMARK 500 LEU b 265 -62.41 35.63 REMARK 500 HIS b 266 141.13 64.23 REMARK 500 PHE b 268 -166.91 -109.86 REMARK 500 ALA b 273 -59.69 -142.05 REMARK 500 SER b 277 154.81 -48.85 REMARK 500 ARG b 284 166.91 -44.88 REMARK 500 ALA b 285 178.88 148.13 REMARK 500 LEU b 286 72.83 101.72 REMARK 500 THR b 287 -15.41 -144.54 REMARK 500 VAL b 288 -48.25 123.82 REMARK 500 GLN b 294 -90.79 -47.93 REMARK 500 MET b 295 -48.82 -20.54 REMARK 500 LYS b 299 32.61 -75.58 REMARK 500 ASN b 300 25.99 -148.27 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE b 20 0.09 SIDE CHAIN REMARK 500 HIS b 28 0.09 SIDE CHAIN REMARK 500 ARG b 64 0.15 SIDE CHAIN REMARK 500 HIS b 139 0.13 SIDE CHAIN REMARK 500 TYR b 202 0.13 SIDE CHAIN REMARK 500 TYR b 210 0.09 SIDE CHAIN REMARK 500 TYR b 224 0.19 SIDE CHAIN REMARK 500 PHE b 244 0.15 SIDE CHAIN REMARK 500 PHE b 262 0.10 SIDE CHAIN REMARK 500 ARG b 264 0.09 SIDE CHAIN REMARK 500 PHE b 272 0.08 SIDE CHAIN REMARK 500 ARG b 311 0.19 SIDE CHAIN REMARK 500 TYR b 312 0.14 SIDE CHAIN REMARK 500 ARG b 322 0.11 SIDE CHAIN REMARK 500 ARG b 369 0.13 SIDE CHAIN REMARK 500 PHE b 388 0.11 SIDE CHAIN REMARK 500 PHE b 404 0.08 SIDE CHAIN REMARK 500 TYR b 432 0.07 SIDE CHAIN REMARK 500 TYR b 435 0.07 SIDE CHAIN REMARK 500 ARG M3110 0.11 SIDE CHAIN REMARK 500 ARG M3124 0.11 SIDE CHAIN REMARK 500 PHE M3157 0.10 SIDE CHAIN REMARK 500 TYR M3183 0.09 SIDE CHAIN REMARK 500 TYR M3210 0.08 SIDE CHAIN REMARK 500 ARG a1002 0.09 SIDE CHAIN REMARK 500 TYR a1024 0.14 SIDE CHAIN REMARK 500 ARG a1079 0.13 SIDE CHAIN REMARK 500 ARG a1095 0.17 SIDE CHAIN REMARK 500 PHE a1123 0.08 SIDE CHAIN REMARK 500 ARG a1130 0.11 SIDE CHAIN REMARK 500 TYR a1146 0.08 SIDE CHAIN REMARK 500 TYR a1184 0.16 SIDE CHAIN REMARK 500 ARG a1195 0.14 SIDE CHAIN REMARK 500 TYR a1198 0.15 SIDE CHAIN REMARK 500 TYR a1236 0.07 SIDE CHAIN REMARK 500 HIS a1257 0.12 SIDE CHAIN REMARK 500 TYR a1286 0.07 SIDE CHAIN REMARK 500 ARG a1347 0.09 SIDE CHAIN REMARK 500 ARG a1364 0.09 SIDE CHAIN REMARK 500 TYR a1373 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE b 49 -14.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9996 RELATED DB: EMDB REMARK 900 COMPLEX OF YEAST CYTOPLASMIC DYNEIN MTBD-HIGH AND MT WITHOUT DTT DBREF 6KIO b 2 437 UNP P02554 TBB_PIG 2 427 DBREF 6KIO M 3095 3224 UNP P36022 DYHC_YEAST 3095 3224 DBREF 6KIO a 1002 1413 PDB 6KIO 6KIO 1002 1413 SEQADV 6KIO CYS M 3101 UNP P36022 ILE 3101 ENGINEERED MUTATION SEQADV 6KIO CYS M 3222 UNP P36022 VAL 3222 ENGINEERED MUTATION SEQRES 1 b 426 ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY ASN SEQRES 2 b 426 GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP GLU SEQRES 3 b 426 HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP SER SEQRES 4 b 426 ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN GLU SEQRES 5 b 426 ALA ALA GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU VAL SEQRES 6 b 426 ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER GLY SEQRES 7 b 426 PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL PHE SEQRES 8 b 426 GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY HIS SEQRES 9 b 426 TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU ASP SEQRES 10 b 426 VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU GLN SEQRES 11 b 426 GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR GLY SEQRES 12 b 426 SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG GLU SEQRES 13 b 426 GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL VAL SEQRES 14 b 426 PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO TYR SEQRES 15 b 426 ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN THR SEQRES 16 b 426 ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR ASP SEQRES 17 b 426 ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR TYR SEQRES 18 b 426 GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER GLY SEQRES 19 b 426 VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN ALA SEQRES 20 b 426 ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE PRO SEQRES 21 b 426 ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU THR SEQRES 22 b 426 SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL PRO SEQRES 23 b 426 GLU LEU THR GLN GLN MET PHE ASP ALA LYS ASN MET MET SEQRES 24 b 426 ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR VAL SEQRES 25 b 426 ALA ALA VAL PHE ARG GLY ARG MET SER MET LYS GLU VAL SEQRES 26 b 426 ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER SER SEQRES 27 b 426 TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR ALA SEQRES 28 b 426 VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER ALA SEQRES 29 b 426 THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU PHE SEQRES 30 b 426 LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG ARG SEQRES 31 b 426 LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET ASP SEQRES 32 b 426 GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN ASP SEQRES 33 b 426 LEU VAL SER GLU TYR GLN GLN TYR GLN ASP SEQRES 1 M 130 MET LYS SER ILE GLN ASP CYS GLU PRO THR ILE LEU GLU SEQRES 2 M 130 ALA GLN ARG GLY VAL LYS ASN ILE LYS LYS GLN GLN LEU SEQRES 3 M 130 THR GLU ILE ARG SER MET VAL ASN PRO PRO SER GLY VAL SEQRES 4 M 130 LYS ILE VAL MET GLU ALA VAL CYS ALA ILE LEU GLY TYR SEQRES 5 M 130 GLN PHE SER ASN TRP ARG ASP ILE GLN GLN PHE ILE ARG SEQRES 6 M 130 LYS ASP ASP PHE ILE HIS ASN ILE VAL HIS TYR ASP THR SEQRES 7 M 130 THR LEU HIS MET LYS PRO GLN ILE ARG LYS TYR MET GLU SEQRES 8 M 130 GLU GLU PHE LEU SER ASP PRO ASN PHE THR TYR GLU THR SEQRES 9 M 130 ILE ASN ARG ALA SER LYS ALA CYS GLY PRO LEU TYR GLN SEQRES 10 M 130 TRP VAL ASN ALA GLN ILE ASN PHE SER LYS CYS LEU GLU SEQRES 1 a 412 ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY VAL SEQRES 2 a 412 GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU GLU SEQRES 3 a 412 HIS GLY ILE GLN PRO ASP GLY HIS VAL PRO ARG ALA VAL SEQRES 4 a 412 PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL ARG SEQRES 5 a 412 THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN LEU SEQRES 6 a 412 ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA ARG SEQRES 7 a 412 GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU VAL SEQRES 8 a 412 LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR GLY SEQRES 9 a 412 LEU GLN GLY PHE SER VAL PHE HIS SER PHE GLY GLY GLY SEQRES 10 a 412 THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG LEU SEQRES 11 a 412 SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE SER SEQRES 12 a 412 ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL GLU SEQRES 13 a 412 PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU GLU SEQRES 14 a 412 HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA ILE SEQRES 15 a 412 TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG PRO SEQRES 16 a 412 THR TYR THR ASN LEU ASN ARG LEU ILE GLY GLN ILE VAL SEQRES 17 a 412 SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA LEU SEQRES 18 a 412 ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL PRO SEQRES 19 a 412 TYR PRO ARG GLY HIS PHE PRO LEU ALA THR TYR ALA PRO SEQRES 20 a 412 VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU SER SEQRES 21 a 412 VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA ASN SEQRES 22 a 412 GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR MET SEQRES 23 a 412 ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO LYS SEQRES 24 a 412 ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS ARG SEQRES 25 a 412 THR ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE LYS SEQRES 26 a 412 VAL GLY ILE ASN TYR GLU PRO PRO THR VAL VAL PRO GLY SEQRES 27 a 412 GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET LEU SEQRES 28 a 412 SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG LEU SEQRES 29 a 412 ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA PHE SEQRES 30 a 412 VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY GLU SEQRES 31 a 412 PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU LYS SEQRES 32 a 412 ASP TYR GLU GLU VAL GLY VAL ASP SER MODRES 6KIO HIS b 6 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 28 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 37 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 107 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 139 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 192 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 229 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 266 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 309 HIS MODIFIED RESIDUE MODRES 6KIO HIS b 406 HIS MODIFIED RESIDUE MODRES 6KIO HIS M 3165 HIS MODIFIED RESIDUE MODRES 6KIO HIS M 3169 HIS MODIFIED RESIDUE MODRES 6KIO HIS M 3175 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1008 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1028 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1035 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1062 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1081 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1113 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1166 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1171 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1240 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1257 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1283 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1367 HIS MODIFIED RESIDUE MODRES 6KIO HIS a 1380 HIS MODIFIED RESIDUE HELIX 1 AA1 GLY b 10 GLU b 27 1 18 HELIX 2 AA2 SER b 40 ARG b 48 1 7 HELIX 3 AA3 ILE b 49 TYR b 53 5 5 HELIX 4 AA4 THR b 74 ARG b 79 1 6 HELIX 5 AA5 ARG b 88 ASP b 90 5 3 HELIX 6 AA6 ASN b 102 TYR b 108 1 7 HELIX 7 AA7 GLU b 110 VAL b 115 1 6 HELIX 8 AA8 VAL b 115 GLU b 127 1 13 HELIX 9 AA9 GLY b 143 TYR b 161 1 19 HELIX 10 AB1 VAL b 182 VAL b 195 1 14 HELIX 11 AB2 ASP b 205 THR b 216 1 12 HELIX 12 AB3 THR b 223 THR b 239 1 17 HELIX 13 AB4 THR b 240 PHE b 244 5 5 HELIX 14 AB5 ASP b 251 ASN b 258 1 8 HELIX 15 AB6 ARG b 278 GLN b 282 5 5 HELIX 16 AB7 VAL b 288 PHE b 296 1 9 HELIX 17 AB8 ASP b 297 MET b 301 5 5 HELIX 18 AB9 ASP b 306 GLY b 310 5 5 HELIX 19 AC1 SER b 324 ASN b 339 1 16 HELIX 20 AC2 SER b 340 PHE b 343 5 4 HELIX 21 AC3 ILE b 384 ARG b 400 1 17 HELIX 22 AC4 LEU b 405 GLY b 410 1 6 HELIX 23 AC5 ASP b 414 TYR b 435 1 22 HELIX 24 AC6 CYS M 3101 LYS M 3113 1 13 HELIX 25 AC7 LYS M 3116 MET M 3126 1 11 HELIX 26 AC8 PRO M 3130 GLY M 3145 1 16 HELIX 27 AC9 ASN M 3150 LYS M 3160 1 11 HELIX 28 AD1 ASP M 3162 TYR M 3170 1 9 HELIX 29 AD2 GLN M 3179 PHE M 3188 1 10 HELIX 30 AD3 THR M 3195 SER M 3203 1 9 HELIX 31 AD4 CYS M 3206 PHE M 3219 1 14 HELIX 32 AD5 GLY a 1010 GLY a 1029 1 20 HELIX 33 AD6 PRO a 1046 GLY a 1055 1 10 HELIX 34 AD7 HIS a 1062 GLU a 1064 5 3 HELIX 35 AD8 ASN a 1076 TYR a 1082 1 7 HELIX 36 AD9 TYR a 1082 CYS a 1103 1 22 HELIX 37 AE1 GLY a 1117 TYR a 1135 1 19 HELIX 38 AE2 VAL a 1156 GLU a 1170 1 15 HELIX 39 AE3 ASP a 1179 ASN a 1190 1 12 HELIX 40 AE4 THR a 1197 ARG a 1217 1 21 HELIX 41 AE5 ASP a 1225 VAL a 1234 1 10 HELIX 42 AE6 SER a 1261 ALA a 1268 1 8 HELIX 43 AE7 CYS a 1269 PHE a 1270 5 2 HELIX 44 AE8 GLU a 1271 GLN a 1275 5 5 HELIX 45 AE9 ASP a 1280 GLY a 1284 5 5 HELIX 46 AF1 VAL a 1298 THR a 1311 1 14 HELIX 47 AF2 ILE a 1358 LYS a 1375 1 18 HELIX 48 AF3 VAL a 1379 GLY a 1384 1 6 HELIX 49 AF4 GLU a 1388 LYS a 1404 1 17 HELIX 50 AF5 LYS a 1404 VAL a 1409 1 6 SHEET 1 AA1 9 PHE b 92 PHE b 94 0 SHEET 2 AA1 9 ALA b 65 ASP b 69 1 N LEU b 67 O VAL b 93 SHEET 3 AA1 9 ILE b 4 ALA b 9 1 N GLN b 8 O ILE b 66 SHEET 4 AA1 9 GLY b 134 SER b 140 1 O THR b 138 N ILE b 7 SHEET 5 AA1 9 ILE b 165 VAL b 171 1 O PHE b 169 N LEU b 137 SHEET 6 AA1 9 GLU b 200 CYS b 203 1 O TYR b 202 N THR b 168 SHEET 7 AA1 9 PHE b 267 GLY b 271 1 O PHE b 268 N THR b 201 SHEET 8 AA1 9 SER b 374 SER b 381 -1 O PHE b 377 N GLY b 271 SHEET 9 AA1 9 TYR b 312 VAL b 315 -1 N THR b 314 O ASN b 380 SHEET 1 AA210 PHE b 92 PHE b 94 0 SHEET 2 AA210 ALA b 65 ASP b 69 1 N LEU b 67 O VAL b 93 SHEET 3 AA210 ILE b 4 ALA b 9 1 N GLN b 8 O ILE b 66 SHEET 4 AA210 GLY b 134 SER b 140 1 O THR b 138 N ILE b 7 SHEET 5 AA210 ILE b 165 VAL b 171 1 O PHE b 169 N LEU b 137 SHEET 6 AA210 GLU b 200 CYS b 203 1 O TYR b 202 N THR b 168 SHEET 7 AA210 PHE b 267 GLY b 271 1 O PHE b 268 N THR b 201 SHEET 8 AA210 SER b 374 SER b 381 -1 O PHE b 377 N GLY b 271 SHEET 9 AA210 VAL b 318 ARG b 320 -1 N ARG b 320 O SER b 374 SHEET 10 AA210 ALA b 354 CYS b 356 1 O CYS b 356 N PHE b 319 SHEET 1 AA3 6 LEU a1066 THR a1068 0 SHEET 2 AA3 6 ALA a1039 ASP a1043 1 N PHE a1041 O ILE a1067 SHEET 3 AA3 6 SER a1006 VAL a1009 1 N HIS a1008 O VAL a1042 SHEET 4 AA3 6 GLY a1108 SER a1114 1 O PHE a1112 N ILE a1007 SHEET 5 AA3 6 SER a1139 ILE a1145 1 O PHE a1143 N VAL a1111 SHEET 6 AA3 6 CYS a1174 VAL a1178 1 O PHE a1176 N SER a1144 SHEET 1 AA4 4 LEU a1243 TYR a1246 0 SHEET 2 AA4 4 ARG a1347 THR a1355 -1 O SER a1353 N LEU a1243 SHEET 3 AA4 4 TYR a1286 GLY a1295 -1 N CYS a1290 O LEU a1352 SHEET 4 AA4 4 PHE a1325 ASN a1330 1 O GLY a1328 N TYR a1293 SSBOND 1 CYS M 3101 CYS M 3222 1555 1555 1.97 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000