HEADER HYDROLASE/PROTEIN BINDING 19-JUL-19 6KIP TITLE CRYSTAL STRUCTURE OF PTPRD PHOSPHATASE DOMAIN IN COMPLEX WITH LIPRIN- TITLE 2 ALPHA3 TANDEM SAM DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: R-PTP-DELTA,TYPEIIA RECEPTOR PROTEIN TYROSINE PHOSPHATASE COMPND 5 DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LIPRIN-ALPHA-3; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PROTEIN TYROSINE PHOSPHATASE RECEPTOR TYPE F POLYPEPTIDE- COMPND 12 INTERACTING PROTEIN ALPHA-3,PTPRF-INTERACTING PROTEIN ALPHA-3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: PPFIA3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS SYNAPSE, PROTEIN TYROSINE PHOSPHATASE, SAM, PROTEIN BINDING, KEYWDS 2 HYDROLASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.WAKITA,A.YAMAGATA,S.FUKAI REVDAT 2 22-NOV-23 6KIP 1 REMARK REVDAT 1 12-FEB-20 6KIP 0 JRNL AUTH M.WAKITA,A.YAMAGATA,T.SHIROSHIMA,H.IZUMI,A.MAEDA,M.SENDO, JRNL AUTH 2 A.IMAI,K.KUBOTA,S.GOTO-ITO,Y.SATO,H.MORI,T.YOSHIDA,S.FUKAI JRNL TITL STRUCTURAL INSIGHTS INTO SELECTIVE INTERACTION BETWEEN TYPE JRNL TITL 2 IIA RECEPTOR PROTEIN TYROSINE PHOSPHATASES AND LIPRIN-ALPHA. JRNL REF NAT COMMUN V. 11 649 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32005855 JRNL DOI 10.1038/S41467-020-14516-5 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 52074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2500 - 5.0063 1.00 3061 156 0.1449 0.1789 REMARK 3 2 5.0063 - 3.9742 1.00 2901 158 0.1202 0.1509 REMARK 3 3 3.9742 - 3.4720 1.00 2851 162 0.1401 0.2056 REMARK 3 4 3.4720 - 3.1546 1.00 2839 146 0.1609 0.2085 REMARK 3 5 3.1546 - 2.9285 0.99 2804 151 0.1755 0.2413 REMARK 3 6 2.9285 - 2.7559 0.99 2814 133 0.1661 0.2034 REMARK 3 7 2.7559 - 2.6179 0.99 2796 125 0.1699 0.2128 REMARK 3 8 2.6179 - 2.5039 0.99 2749 162 0.1586 0.1894 REMARK 3 9 2.5039 - 2.4075 0.98 2717 156 0.1553 0.2115 REMARK 3 10 2.4075 - 2.3245 0.98 2764 137 0.1665 0.2029 REMARK 3 11 2.3245 - 2.2518 0.97 2714 147 0.1644 0.2252 REMARK 3 12 2.2518 - 2.1874 0.97 2695 136 0.1828 0.2256 REMARK 3 13 2.1874 - 2.1298 0.97 2704 145 0.1889 0.2562 REMARK 3 14 2.1298 - 2.0779 0.97 2681 140 0.2028 0.2379 REMARK 3 15 2.0779 - 2.0306 0.96 2650 140 0.2269 0.2931 REMARK 3 16 2.0306 - 1.9874 0.94 2625 135 0.2312 0.2974 REMARK 3 17 1.9874 - 1.9476 0.93 2607 129 0.2495 0.2982 REMARK 3 18 1.9476 - 1.9110 0.91 2519 125 0.2651 0.2947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4687 REMARK 3 ANGLE : 1.020 6330 REMARK 3 CHIRALITY : 0.041 676 REMARK 3 PLANARITY : 0.004 819 REMARK 3 DIHEDRAL : 14.442 1758 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1212 THROUGH 1258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.5690 -13.3813 -8.0144 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.4533 REMARK 3 T33: 0.4333 T12: 0.0218 REMARK 3 T13: 0.0364 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.7037 L22: 2.4675 REMARK 3 L33: 2.0287 L12: 0.2528 REMARK 3 L13: 0.3840 L23: 0.3305 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.2845 S13: -0.0221 REMARK 3 S21: -0.1548 S22: 0.0774 S23: -0.9197 REMARK 3 S31: -0.0022 S32: 0.8922 S33: 0.0396 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1259 THROUGH 1309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3370 10.6247 0.5278 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.1493 REMARK 3 T33: 0.3067 T12: -0.0502 REMARK 3 T13: -0.0548 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.8650 L22: 1.7886 REMARK 3 L33: 1.8567 L12: -0.6351 REMARK 3 L13: -0.1714 L23: 0.1142 REMARK 3 S TENSOR REMARK 3 S11: -0.1251 S12: -0.1049 S13: 0.6886 REMARK 3 S21: -0.1044 S22: -0.0708 S23: 0.0986 REMARK 3 S31: -0.8004 S32: 0.1233 S33: 0.1669 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1310 THROUGH 1348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3467 3.2109 9.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.1811 REMARK 3 T33: 0.1909 T12: 0.0314 REMARK 3 T13: -0.0342 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 1.2683 L22: 1.0652 REMARK 3 L33: 1.3863 L12: -0.1542 REMARK 3 L13: 0.3648 L23: 0.1626 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: -0.2112 S13: 0.2888 REMARK 3 S21: 0.0873 S22: -0.0514 S23: -0.0252 REMARK 3 S31: -0.3186 S32: -0.1334 S33: 0.1518 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1349 THROUGH 1374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7458 3.0549 16.9773 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.4624 REMARK 3 T33: 0.2335 T12: 0.0489 REMARK 3 T13: 0.0162 T23: -0.1593 REMARK 3 L TENSOR REMARK 3 L11: 1.6967 L22: 2.0038 REMARK 3 L33: 1.2409 L12: 0.0567 REMARK 3 L13: 0.5523 L23: 0.2081 REMARK 3 S TENSOR REMARK 3 S11: -0.1220 S12: -0.6412 S13: 0.4551 REMARK 3 S21: 0.1719 S22: -0.2009 S23: 0.2364 REMARK 3 S31: -0.2429 S32: -0.5278 S33: 0.0128 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1375 THROUGH 1413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5109 -5.2968 10.8702 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: 0.2049 REMARK 3 T33: 0.1211 T12: 0.0079 REMARK 3 T13: -0.0249 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.6519 L22: 1.8815 REMARK 3 L33: 2.1070 L12: -0.7109 REMARK 3 L13: 0.1986 L23: 0.4766 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.4261 S13: 0.0689 REMARK 3 S21: 0.0674 S22: -0.0255 S23: 0.1096 REMARK 3 S31: -0.0269 S32: -0.3101 S33: 0.0463 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1414 THROUGH 1429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5519 -13.8017 2.2868 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1091 REMARK 3 T33: 0.1581 T12: -0.0249 REMARK 3 T13: -0.0197 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 8.8023 L22: 2.2168 REMARK 3 L33: 3.4133 L12: -3.4011 REMARK 3 L13: 2.4346 L23: -1.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.2823 S12: 0.1749 S13: -0.6187 REMARK 3 S21: -0.1191 S22: -0.1013 S23: 0.3755 REMARK 3 S31: 0.1713 S32: -0.0518 S33: -0.1214 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1430 THROUGH 1445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1926 -2.1827 2.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1507 REMARK 3 T33: 0.1588 T12: -0.0044 REMARK 3 T13: -0.0288 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.6258 L22: 1.4219 REMARK 3 L33: 0.9848 L12: 0.7753 REMARK 3 L13: -0.2517 L23: -0.3662 REMARK 3 S TENSOR REMARK 3 S11: -0.0615 S12: -0.0148 S13: 0.2596 REMARK 3 S21: -0.0095 S22: 0.0552 S23: 0.1015 REMARK 3 S31: 0.0591 S32: -0.1818 S33: 0.1411 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1446 THROUGH 1463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5532 -12.6664 -5.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1244 REMARK 3 T33: 0.1438 T12: 0.0030 REMARK 3 T13: -0.0098 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.0125 L22: 2.5820 REMARK 3 L33: 6.2413 L12: -0.0883 REMARK 3 L13: 1.3856 L23: 1.8760 REMARK 3 S TENSOR REMARK 3 S11: 0.1377 S12: 0.0104 S13: -0.2380 REMARK 3 S21: -0.2335 S22: -0.1695 S23: 0.0730 REMARK 3 S31: 0.1771 S32: -0.2903 S33: 0.0499 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1464 THROUGH 1485 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8772 -5.5850 -6.4875 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1472 REMARK 3 T33: 0.1247 T12: -0.0061 REMARK 3 T13: -0.0007 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.5089 L22: 1.3941 REMARK 3 L33: 1.6158 L12: -0.1547 REMARK 3 L13: 0.6443 L23: -0.6077 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0746 S13: 0.0574 REMARK 3 S21: -0.1779 S22: -0.0555 S23: -0.2746 REMARK 3 S31: -0.0562 S32: 0.2454 S33: 0.0934 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1486 THROUGH 1507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5022 -20.9023 -2.3504 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.1317 REMARK 3 T33: 0.2071 T12: 0.0442 REMARK 3 T13: 0.0069 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 3.7945 L22: 4.3648 REMARK 3 L33: 2.0473 L12: 1.8524 REMARK 3 L13: 0.4169 L23: 0.1785 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: 0.1077 S13: -0.4812 REMARK 3 S21: 0.0021 S22: -0.0403 S23: -0.0919 REMARK 3 S31: 0.4745 S32: 0.1080 S33: -0.1620 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 807 THROUGH 904 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3110 -23.2498 8.4912 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.3274 REMARK 3 T33: 0.2554 T12: -0.0781 REMARK 3 T13: -0.0325 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 2.4818 L22: 2.3131 REMARK 3 L33: 1.0305 L12: 0.4286 REMARK 3 L13: 0.2507 L23: -0.9135 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: -0.1706 S13: -0.2774 REMARK 3 S21: 0.0928 S22: 0.0183 S23: 0.2094 REMARK 3 S31: 0.1500 S32: -0.2506 S33: -0.1612 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 905 THROUGH 1114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0200 -2.9259 -13.5388 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1885 REMARK 3 T33: 0.2345 T12: 0.0090 REMARK 3 T13: -0.0059 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 1.9082 L22: 1.8715 REMARK 3 L33: 3.1102 L12: -0.5550 REMARK 3 L13: 0.8552 L23: -1.4998 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0627 S13: -0.0836 REMARK 3 S21: -0.0797 S22: 0.1268 S23: 0.1617 REMARK 3 S31: 0.0367 S32: -0.3509 S33: -0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FH7, 3TAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350 AND 0.1 M TRIS-HCL (PH REMARK 280 8.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.00600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.00600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.00600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.00600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.00600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.00600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.00600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.00600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1251 REMARK 465 ALA A 1252 REMARK 465 HIS A 1253 REMARK 465 THR A 1508 REMARK 465 LEU A 1509 REMARK 465 GLU A 1510 REMARK 465 HIS A 1511 REMARK 465 HIS A 1512 REMARK 465 HIS A 1513 REMARK 465 HIS A 1514 REMARK 465 HIS A 1515 REMARK 465 HIS A 1516 REMARK 465 LEU B 803 REMARK 465 GLY B 804 REMARK 465 SER B 805 REMARK 465 ALA B 806 REMARK 465 PRO B 907 REMARK 465 SER B 908 REMARK 465 ALA B 909 REMARK 465 PRO B 910 REMARK 465 ALA B 911 REMARK 465 SER B 912 REMARK 465 SER B 913 REMARK 465 ARG B 914 REMARK 465 THR B 915 REMARK 465 PRO B 916 REMARK 465 THR B 917 REMARK 465 GLY B 918 REMARK 465 ASN B 919 REMARK 465 VAL B 920 REMARK 465 TRP B 921 REMARK 465 MET B 922 REMARK 465 THR B 923 REMARK 465 HIS B 924 REMARK 465 GLU B 925 REMARK 465 GLU B 926 REMARK 465 MET B 927 REMARK 465 GLU B 928 REMARK 465 SER B 929 REMARK 465 LEU B 930 REMARK 465 THR B 931 REMARK 465 ALA B 932 REMARK 465 ALA B 933 REMARK 465 THR B 934 REMARK 465 LYS B 935 REMARK 465 PRO B 936 REMARK 465 GLU B 937 REMARK 465 THR B 938 REMARK 465 LYS B 939 REMARK 465 GLU B 940 REMARK 465 ILE B 941 REMARK 465 SER B 942 REMARK 465 ARG B 1115 REMARK 465 LEU B 1116 REMARK 465 ASP B 1117 REMARK 465 GLU B 1118 REMARK 465 ASP B 1119 REMARK 465 SER B 1120 REMARK 465 ALA B 1121 REMARK 465 LYS B 1122 REMARK 465 SER B 1123 REMARK 465 PHE B 1124 REMARK 465 SER B 1125 REMARK 465 ARG B 1126 REMARK 465 SER B 1127 REMARK 465 THR B 1128 REMARK 465 ARG B 1129 REMARK 465 ALA B 1130 REMARK 465 ALA B 1131 REMARK 465 ALA B 1132 REMARK 465 SER B 1133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1809 O HOH A 1816 1.93 REMARK 500 O HOH A 1776 O HOH B 1378 1.94 REMARK 500 O HOH B 1217 O HOH B 1362 1.97 REMARK 500 O HOH A 1756 O HOH A 1791 1.99 REMARK 500 O HOH A 1806 O HOH A 1811 2.03 REMARK 500 O HOH A 1820 O HOH B 1350 2.07 REMARK 500 OG1 THR B 1060 O HOH B 1201 2.10 REMARK 500 O HOH A 1653 O HOH A 1773 2.11 REMARK 500 O ARG B 1114 O HOH B 1203 2.16 REMARK 500 O HOH A 1654 O HOH B 1310 2.17 REMARK 500 O HOH A 1810 O HOH B 1386 2.18 REMARK 500 O ILE B 1089 O HOH B 1204 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1255 -153.74 -118.53 REMARK 500 ILE A1258 -69.79 -97.25 REMARK 500 GLN A1363 -114.04 61.08 REMARK 500 CYS A1440 -131.82 -128.44 REMARK 500 VAL A1444 -33.95 -131.03 REMARK 500 VAL A1483 91.81 60.24 REMARK 500 ASN B 953 -166.10 -79.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 6KIP A 1213 1508 UNP Q64487 PTPRD_MOUSE 1617 1912 DBREF 6KIP B 806 1127 UNP P60469 LIPA3_MOUSE 806 1127 SEQADV 6KIP MET A 1212 UNP Q64487 EXPRESSION TAG SEQADV 6KIP LEU A 1509 UNP Q64487 EXPRESSION TAG SEQADV 6KIP GLU A 1510 UNP Q64487 EXPRESSION TAG SEQADV 6KIP HIS A 1511 UNP Q64487 EXPRESSION TAG SEQADV 6KIP HIS A 1512 UNP Q64487 EXPRESSION TAG SEQADV 6KIP HIS A 1513 UNP Q64487 EXPRESSION TAG SEQADV 6KIP HIS A 1514 UNP Q64487 EXPRESSION TAG SEQADV 6KIP HIS A 1515 UNP Q64487 EXPRESSION TAG SEQADV 6KIP HIS A 1516 UNP Q64487 EXPRESSION TAG SEQADV 6KIP LEU B 803 UNP P60469 EXPRESSION TAG SEQADV 6KIP GLY B 804 UNP P60469 EXPRESSION TAG SEQADV 6KIP SER B 805 UNP P60469 EXPRESSION TAG SEQADV 6KIP THR B 1128 UNP P60469 EXPRESSION TAG SEQADV 6KIP ARG B 1129 UNP P60469 EXPRESSION TAG SEQADV 6KIP ALA B 1130 UNP P60469 EXPRESSION TAG SEQADV 6KIP ALA B 1131 UNP P60469 EXPRESSION TAG SEQADV 6KIP ALA B 1132 UNP P60469 EXPRESSION TAG SEQADV 6KIP SER B 1133 UNP P60469 EXPRESSION TAG SEQRES 1 A 305 MET ASN THR GLU VAL PRO ALA ARG ASN LEU TYR ALA TYR SEQRES 2 A 305 ILE GLN LYS LEU THR GLN ILE GLU THR GLY GLU ASN VAL SEQRES 3 A 305 THR GLY MET GLU LEU GLU PHE LYS ARG LEU ALA SER SER SEQRES 4 A 305 LYS ALA HIS THR SER ARG PHE ILE SER ALA ASN LEU PRO SEQRES 5 A 305 CYS ASN LYS PHE LYS ASN ARG LEU VAL ASN ILE MET PRO SEQRES 6 A 305 TYR GLU SER THR ARG VAL CYS LEU GLN PRO ILE ARG GLY SEQRES 7 A 305 VAL GLU GLY SER ASP TYR ILE ASN ALA SER PHE LEU ASP SEQRES 8 A 305 GLY TYR ARG GLN GLN LYS ALA TYR ILE ALA THR GLN GLY SEQRES 9 A 305 PRO LEU ALA GLU THR THR GLU ASP PHE TRP ARG MET LEU SEQRES 10 A 305 TRP GLU HIS ASN SER THR ILE VAL VAL MET LEU THR LYS SEQRES 11 A 305 LEU ARG GLU MET GLY ARG GLU LYS CYS HIS GLN TYR TRP SEQRES 12 A 305 PRO ALA GLU ARG SER ALA ARG TYR GLN TYR PHE VAL VAL SEQRES 13 A 305 ASP PRO MET ALA GLU TYR ASN MET PRO GLN TYR ILE LEU SEQRES 14 A 305 ARG GLU PHE LYS VAL THR ASP ALA ARG ASP GLY GLN SER SEQRES 15 A 305 ARG THR VAL ARG GLN PHE GLN PHE THR ASP TRP PRO GLU SEQRES 16 A 305 GLN GLY VAL PRO LYS SER GLY GLU GLY PHE ILE ASP PHE SEQRES 17 A 305 ILE GLY GLN VAL HIS LYS THR LYS GLU GLN PHE GLY GLN SEQRES 18 A 305 ASP GLY PRO ILE SER VAL HIS CYS SER ALA GLY VAL GLY SEQRES 19 A 305 ARG THR GLY VAL PHE ILE THR LEU SER ILE VAL LEU GLU SEQRES 20 A 305 ARG MET ARG TYR GLU GLY VAL VAL ASP ILE PHE GLN THR SEQRES 21 A 305 VAL LYS MET LEU ARG THR GLN ARG PRO ALA MET VAL GLN SEQRES 22 A 305 THR GLU ASP GLN TYR GLN PHE CYS TYR ARG ALA ALA LEU SEQRES 23 A 305 GLU TYR LEU GLY SER PHE ASP HIS TYR ALA THR LEU GLU SEQRES 24 A 305 HIS HIS HIS HIS HIS HIS SEQRES 1 B 331 LEU GLY SER ALA LYS LEU THR GLY PRO GLY ASP LYS ASP SEQRES 2 B 331 ARG ARG ASN LYS ARG LYS HIS GLU LEU LEU GLU GLU ALA SEQRES 3 B 331 CYS ARG GLN GLY LEU PRO PHE ALA ALA TRP ASP GLY PRO SEQRES 4 B 331 THR VAL VAL SER TRP LEU GLU LEU TRP VAL GLY MET PRO SEQRES 5 B 331 ALA TRP TYR VAL ALA ALA CYS ARG ALA ASN VAL LYS SER SEQRES 6 B 331 GLY ALA ILE MET ALA ASN LEU SER ASP THR GLU ILE GLN SEQRES 7 B 331 ARG GLU ILE GLY ILE SER ASN PRO LEU HIS ARG LEU LYS SEQRES 8 B 331 LEU ARG LEU ALA ILE GLN GLU MET VAL SER LEU THR SER SEQRES 9 B 331 PRO SER ALA PRO ALA SER SER ARG THR PRO THR GLY ASN SEQRES 10 B 331 VAL TRP MET THR HIS GLU GLU MET GLU SER LEU THR ALA SEQRES 11 B 331 ALA THR LYS PRO GLU THR LYS GLU ILE SER TRP GLU GLN SEQRES 12 B 331 ILE LEU ALA TYR GLY ASP MET ASN HIS GLU TRP VAL GLY SEQRES 13 B 331 ASN ASP TRP LEU PRO SER LEU GLY LEU PRO GLN TYR ARG SEQRES 14 B 331 SER TYR PHE MET GLU SER LEU VAL ASP ALA ARG MET LEU SEQRES 15 B 331 ASP HIS LEU ASN LYS LYS GLU LEU ARG GLY GLN LEU LYS SEQRES 16 B 331 MET VAL ASP SER PHE HIS ARG VAL SER LEU HIS TYR GLY SEQRES 17 B 331 ILE MET CYS LEU LYS ARG LEU ASN TYR ASP ARG LYS ASP SEQRES 18 B 331 LEU GLU ARG ARG ARG GLU GLU SER GLN THR GLN ILE ARG SEQRES 19 B 331 ASP VAL MET VAL TRP SER ASN GLU ARG VAL MET GLY TRP SEQRES 20 B 331 VAL SER GLY LEU GLY LEU LYS GLU PHE ALA THR ASN LEU SEQRES 21 B 331 THR GLU SER GLY VAL HIS GLY ALA LEU LEU ALA LEU ASP SEQRES 22 B 331 GLU THR PHE ASP TYR SER ASP LEU ALA LEU LEU LEU GLN SEQRES 23 B 331 ILE PRO THR GLN ASN ALA GLN ALA ARG GLN LEU LEU GLU SEQRES 24 B 331 LYS GLU PHE SER ASN LEU ILE SER LEU GLY THR ASP ARG SEQRES 25 B 331 ARG LEU ASP GLU ASP SER ALA LYS SER PHE SER ARG SER SEQRES 26 B 331 THR ARG ALA ALA ALA SER FORMUL 3 HOH *428(H2 O) HELIX 1 AA1 ASN A 1220 GLN A 1230 1 11 HELIX 2 AA2 THR A 1238 LEU A 1247 1 10 HELIX 3 AA3 ILE A 1258 ASN A 1269 5 12 HELIX 4 AA4 TYR A 1277 ARG A 1281 5 5 HELIX 5 AA5 LEU A 1317 GLU A 1319 5 3 HELIX 6 AA6 THR A 1320 HIS A 1331 1 12 HELIX 7 AA7 GLY A 1413 PHE A 1430 1 18 HELIX 8 AA8 GLY A 1445 GLY A 1464 1 20 HELIX 9 AA9 ASP A 1467 THR A 1477 1 11 HELIX 10 AB1 THR A 1485 GLY A 1501 1 17 HELIX 11 AB2 SER A 1502 ALA A 1507 5 6 HELIX 12 AB3 GLY B 812 GLN B 831 1 20 HELIX 13 AB4 PRO B 834 TRP B 838 5 5 HELIX 14 AB5 ASP B 839 TRP B 850 1 12 HELIX 15 AB6 PRO B 854 VAL B 865 1 12 HELIX 16 AB7 SER B 867 ASN B 873 1 7 HELIX 17 AB8 SER B 875 ILE B 883 1 9 HELIX 18 AB9 ASN B 887 THR B 905 1 19 HELIX 19 AC1 ASN B 953 ASP B 960 1 8 HELIX 20 AC2 ASP B 960 LEU B 965 1 6 HELIX 21 AC3 GLY B 966 GLN B 969 5 4 HELIX 22 AC4 TYR B 970 SER B 977 1 8 HELIX 23 AC5 ASP B 980 ASP B 985 1 6 HELIX 24 AC6 ASN B 988 GLY B 994 1 7 HELIX 25 AC7 ASP B 1000 LEU B 1017 1 18 HELIX 26 AC8 ASP B 1020 GLU B 1030 1 11 HELIX 27 AC9 ASP B 1037 TRP B 1041 5 5 HELIX 28 AD1 SER B 1042 LEU B 1053 1 12 HELIX 29 AD2 LEU B 1055 THR B 1060 1 6 HELIX 30 AD3 ASN B 1061 THR B 1063 5 3 HELIX 31 AD4 HIS B 1068 ASP B 1075 1 8 HELIX 32 AD5 ASP B 1079 LEU B 1087 1 9 HELIX 33 AD6 ASN B 1093 THR B 1112 1 20 SHEET 1 AA1 2 VAL A1216 PRO A1217 0 SHEET 2 AA1 2 VAL A1465 VAL A1466 -1 O VAL A1466 N VAL A1216 SHEET 1 AA2 8 ALA A1298 LEU A1301 0 SHEET 2 AA2 8 TYR A1310 GLN A1314 -1 O ALA A1312 N SER A1299 SHEET 3 AA2 8 ILE A1436 CYS A1440 1 O VAL A1438 N ILE A1311 SHEET 4 AA2 8 ILE A1335 MET A1338 1 N VAL A1337 O SER A1437 SHEET 5 AA2 8 SER A1393 PHE A1401 1 O PHE A1399 N VAL A1336 SHEET 6 AA2 8 TYR A1378 ASP A1387 -1 N ARG A1381 O GLN A1398 SHEET 7 AA2 8 PHE A1365 MET A1375 -1 N MET A1370 O GLU A1382 SHEET 8 AA2 8 ALA A1360 TYR A1362 -1 N ALA A1360 O VAL A1367 SHEET 1 AA3 2 ARG A1343 GLU A1344 0 SHEET 2 AA3 2 ARG A1347 GLU A1348 -1 O ARG A1347 N GLU A1344 CRYST1 98.012 98.012 140.000 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007143 0.00000