HEADER LIGASE 22-JUL-19 6KJM TITLE STRUCTURAL BASIS FOR DOMAIN ROTATION DURING ADENYLATION OF ACTIVE SITE TITLE 2 K123 AND FRAGMENT LIBRARY SCREENING AGAINST NAD+ -DEPENDENT DNA TITLE 3 LIGASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIGA,POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD(+)]; COMPND 5 EC: 6.5.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: LIGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.RAMACHANDRAN,A.SHUKLA,M.AFSAR REVDAT 4 22-NOV-23 6KJM 1 REMARK REVDAT 3 31-MAR-21 6KJM 1 JRNL REVDAT 2 03-FEB-21 6KJM 1 JRNL REVDAT 1 22-JUL-20 6KJM 0 JRNL AUTH A.SHUKLA,M.AFSAR,N.KUMAR,S.KUMAR,R.RAMACHANDRAN JRNL TITL STRUCTURE BASED IDENTIFICATION OF FIRST-IN-CLASS FRAGMENT JRNL TITL 2 INHIBITORS THAT TARGET THE NMN POCKET OF M. TUBERCULOSIS NAD JRNL TITL 3 + -DEPENDENT DNA LIGASE A. JRNL REF J.STRUCT.BIOL. V. 213 07655 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 33197566 JRNL DOI 10.1016/J.JSB.2020.107655 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2270 - 4.7381 1.00 2937 161 0.2285 0.2196 REMARK 3 2 4.7381 - 3.7614 1.00 2773 140 0.1792 0.2132 REMARK 3 3 3.7614 - 3.2862 1.00 2727 132 0.2034 0.2396 REMARK 3 4 3.2862 - 2.9858 1.00 2686 156 0.2288 0.3090 REMARK 3 5 2.9858 - 2.7718 1.00 2691 137 0.2296 0.2452 REMARK 3 6 2.7718 - 2.6084 1.00 2651 154 0.2203 0.2661 REMARK 3 7 2.6084 - 2.4778 1.00 2652 138 0.2262 0.2594 REMARK 3 8 2.4778 - 2.3700 1.00 2649 139 0.2350 0.2585 REMARK 3 9 2.3700 - 2.2787 1.00 2629 141 0.2416 0.3005 REMARK 3 10 2.2787 - 2.2001 1.00 2680 120 0.2575 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 6KJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300012957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZAU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES NA PH=7.6 0.1M NACL 1.5M REMARK 280 AMMONIUM SULFATE, PH 7.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.11567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.23133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.67350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 167.78917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.55783 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.11567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.23133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 167.78917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.67350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.55783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 7 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 109 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 309 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 315 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 26 CD GLU A 26 OE1 -0.073 REMARK 500 GLU A 26 CD GLU A 26 OE2 -0.078 REMARK 500 GLU A 121 CD GLU A 121 OE1 -0.081 REMARK 500 GLU A 121 CD GLU A 121 OE2 -0.080 REMARK 500 GLU A 184 CD GLU A 184 OE1 -0.073 REMARK 500 GLU A 184 CD GLU A 184 OE2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 71 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 84 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 222 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 302 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 165.40 176.71 REMARK 500 PHE A 244 118.47 -167.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDEU5 RELATED DB: SASBDB DBREF 6KJM A 1 328 UNP P9WNV1 DNLJ_MYCTU 1 328 SEQADV 6KJM HIS A 329 UNP P9WNV1 EXPRESSION TAG SEQADV 6KJM HIS A 330 UNP P9WNV1 EXPRESSION TAG SEQADV 6KJM HIS A 331 UNP P9WNV1 EXPRESSION TAG SEQADV 6KJM HIS A 332 UNP P9WNV1 EXPRESSION TAG SEQADV 6KJM HIS A 333 UNP P9WNV1 EXPRESSION TAG SEQADV 6KJM HIS A 334 UNP P9WNV1 EXPRESSION TAG SEQRES 1 A 334 MET SER SER PRO ASP ALA ASP GLN THR ALA PRO GLU VAL SEQRES 2 A 334 LEU ARG GLN TRP GLN ALA LEU ALA GLU GLU VAL ARG GLU SEQRES 3 A 334 HIS GLN PHE ARG TYR TYR VAL ARG ASP ALA PRO ILE ILE SEQRES 4 A 334 SER ASP ALA GLU PHE ASP GLU LEU LEU ARG ARG LEU GLU SEQRES 5 A 334 ALA LEU GLU GLU GLN HIS PRO GLU LEU ARG THR PRO ASP SEQRES 6 A 334 SER PRO THR GLN LEU VAL GLY GLY ALA GLY PHE ALA THR SEQRES 7 A 334 ASP PHE GLU PRO VAL ASP HIS LEU GLU ARG MET LEU SER SEQRES 8 A 334 LEU ASP ASN ALA PHE THR ALA ASP GLU LEU ALA ALA TRP SEQRES 9 A 334 ALA GLY ARG ILE HIS ALA GLU VAL GLY ASP ALA ALA HIS SEQRES 10 A 334 TYR LEU CYS GLU LEU LYS ILE ASP GLY VAL ALA LEU SER SEQRES 11 A 334 LEU VAL TYR ARG GLU GLY ARG LEU THR ARG ALA SER THR SEQRES 12 A 334 ARG GLY ASP GLY ARG THR GLY GLU ASP VAL THR LEU ASN SEQRES 13 A 334 ALA ARG THR ILE ALA ASP VAL PRO GLU ARG LEU THR PRO SEQRES 14 A 334 GLY ASP ASP TYR PRO VAL PRO GLU VAL LEU GLU VAL ARG SEQRES 15 A 334 GLY GLU VAL PHE PHE ARG LEU ASP ASP PHE GLN ALA LEU SEQRES 16 A 334 ASN ALA SER LEU VAL GLU GLU GLY LYS ALA PRO PHE ALA SEQRES 17 A 334 ASN PRO ARG ASN SER ALA ALA GLY SER LEU ARG GLN LYS SEQRES 18 A 334 ASP PRO ALA VAL THR ALA ARG ARG ARG LEU ARG MET ILE SEQRES 19 A 334 CYS HIS GLY LEU GLY HIS VAL GLU GLY PHE ARG PRO ALA SEQRES 20 A 334 THR LEU HIS GLN ALA TYR LEU ALA LEU ARG ALA TRP GLY SEQRES 21 A 334 LEU PRO VAL SER GLU HIS THR THR LEU ALA THR ASP LEU SEQRES 22 A 334 ALA GLY VAL ARG GLU ARG ILE ASP TYR TRP GLY GLU HIS SEQRES 23 A 334 ARG HIS GLU VAL ASP HIS GLU ILE ASP GLY VAL VAL VAL SEQRES 24 A 334 LYS VAL ASP GLU VAL ALA LEU GLN ARG ARG LEU GLY SER SEQRES 25 A 334 THR SER ARG ALA PRO ARG TRP ALA ILE ALA TYR LYS TYR SEQRES 26 A 334 PRO PRO GLU HIS HIS HIS HIS HIS HIS HET NMN A 401 36 HET AMP A 402 35 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 2 NMN C11 H16 N2 O8 P 1+ FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *105(H2 O) HELIX 1 AA1 ALA A 10 VAL A 33 1 24 HELIX 2 AA2 SER A 40 HIS A 58 1 19 HELIX 3 AA3 PRO A 59 ARG A 62 5 4 HELIX 4 AA4 THR A 97 GLY A 113 1 17 HELIX 5 AA5 VAL A 153 ARG A 158 1 6 HELIX 6 AA6 ARG A 188 GLU A 202 1 15 HELIX 7 AA7 ASN A 209 ARG A 219 1 11 HELIX 8 AA8 ASP A 222 ARG A 228 1 7 HELIX 9 AA9 THR A 248 GLY A 260 1 13 HELIX 10 AB1 ASP A 272 ARG A 287 1 16 HELIX 11 AB2 HIS A 288 VAL A 290 5 3 HELIX 12 AB3 GLU A 303 GLY A 311 1 9 SHEET 1 AA1 2 PRO A 82 ASP A 84 0 SHEET 2 AA1 2 THR A 149 GLU A 151 -1 O GLY A 150 N VAL A 83 SHEET 1 AA2 5 ASN A 94 ALA A 95 0 SHEET 2 AA2 5 ALA A 320 LYS A 324 1 O ALA A 322 N ALA A 95 SHEET 3 AA2 5 ILE A 294 VAL A 301 -1 N VAL A 297 O TYR A 323 SHEET 4 AA2 5 TYR A 118 ILE A 124 -1 N LEU A 119 O LYS A 300 SHEET 5 AA2 5 THR A 268 ALA A 270 -1 O THR A 268 N CYS A 120 SHEET 1 AA3 4 ARG A 137 SER A 142 0 SHEET 2 AA3 4 VAL A 127 ARG A 134 -1 N SER A 130 O SER A 142 SHEET 3 AA3 4 VAL A 178 PHE A 186 -1 O VAL A 185 N VAL A 127 SHEET 4 AA3 4 ARG A 232 GLU A 242 -1 O GLY A 239 N GLU A 180 SITE 1 AC1 9 GLN A 28 TYR A 31 TYR A 32 ILE A 39 SITE 2 AC1 9 SER A 40 ASP A 41 PHE A 44 ASP A 45 SITE 3 AC1 9 GLY A 72 SITE 1 AC2 13 LEU A 90 SER A 91 ASN A 94 GLU A 121 SITE 2 AC2 13 LEU A 122 LYS A 123 ILE A 124 ALA A 128 SITE 3 AC2 13 ARG A 144 GLU A 184 HIS A 236 LYS A 300 SITE 4 AC2 13 LYS A 324 SITE 1 AC3 5 ARG A 30 ARG A 34 VAL A 163 GLU A 165 SITE 2 AC3 5 HOH A 513 SITE 1 AC4 5 VAL A 127 ALA A 128 ARG A 144 HOH A 503 SITE 2 AC4 5 HOH A 520 SITE 1 AC5 3 GLU A 242 GLY A 243 PHE A 244 SITE 1 AC6 4 ARG A 134 THR A 139 ARG A 140 HOH A 509 CRYST1 95.728 95.728 201.347 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010446 0.006031 0.000000 0.00000 SCALE2 0.000000 0.012062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004967 0.00000