HEADER VIRAL PROTEIN 23-JUL-19 6KK3 TITLE CRYSTAL STRUCTURE OF ZIKA NS2B-NS3 PROTEASE WITH COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GENOME POLYPROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_COMMON: ZIKV; SOURCE 10 ORGANISM_TAXID: 64320; SOURCE 11 GENE: GP1, A2G93_63394GPGP1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, PROTEASE INHIBITOR COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.QUEK REVDAT 3 22-NOV-23 6KK3 1 REMARK REVDAT 2 19-AUG-20 6KK3 1 JRNL REVDAT 1 17-JUN-20 6KK3 0 JRNL AUTH N.J.BRAUN,J.P.QUEK,S.HUBER,J.KOURETOVA,D.ROGGE, JRNL AUTH 2 H.LANG-HENKEL,E.Z.K.CHEONG,B.L.A.CHEW,A.HEINE,D.LUO, JRNL AUTH 3 T.STEINMETZER JRNL TITL STRUCTURE-BASED MACROCYCLIZATION OF SUBSTRATE ANALOGUE JRNL TITL 2 NS2B-NS3 PROTEASE INHIBITORS OF ZIKA, WEST NILE AND DENGUE JRNL TITL 3 VIRUSES. JRNL REF CHEMMEDCHEM V. 15 1439 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 32501637 JRNL DOI 10.1002/CMDC.202000237 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.1200 - 2.0500 0.00 1289 0 0.2570 0.3510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3216 9.7102 -18.7244 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.3118 REMARK 3 T33: 0.3740 T12: 0.0757 REMARK 3 T13: 0.0724 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 2.2043 L22: 5.1021 REMARK 3 L33: 5.7205 L12: 1.4570 REMARK 3 L13: 1.2832 L23: 2.3077 REMARK 3 S TENSOR REMARK 3 S11: 0.2429 S12: 0.0342 S13: 0.5272 REMARK 3 S21: -0.1190 S22: -0.4941 S23: 0.2840 REMARK 3 S31: -0.4961 S32: -0.4500 S33: 0.0351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4923 -5.5276 -19.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.2739 REMARK 3 T33: 0.2703 T12: 0.0468 REMARK 3 T13: 0.0552 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.4803 L22: 2.4320 REMARK 3 L33: 3.8596 L12: 0.3083 REMARK 3 L13: -0.6937 L23: 1.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0455 S13: -0.1601 REMARK 3 S21: -0.2330 S22: 0.0893 S23: -0.2599 REMARK 3 S31: -0.1483 S32: 0.5284 S33: -0.0861 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9985 8.9444 -17.6878 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.2877 REMARK 3 T33: 0.2882 T12: 0.0787 REMARK 3 T13: 0.0321 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.6861 L22: 3.9246 REMARK 3 L33: 2.4531 L12: 1.8717 REMARK 3 L13: 0.0140 L23: -0.0810 REMARK 3 S TENSOR REMARK 3 S11: 0.2498 S12: 0.4213 S13: 0.6220 REMARK 3 S21: 0.1710 S22: -0.0297 S23: 0.4420 REMARK 3 S31: -0.3083 S32: -0.3686 S33: -0.2494 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1714 8.6333 -10.0722 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.2373 REMARK 3 T33: 0.3452 T12: 0.0424 REMARK 3 T13: 0.0964 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.1142 L22: 1.9381 REMARK 3 L33: 2.3368 L12: 1.9738 REMARK 3 L13: -0.8488 L23: -1.5333 REMARK 3 S TENSOR REMARK 3 S11: 0.2831 S12: -0.0548 S13: 0.4407 REMARK 3 S21: 0.3000 S22: -0.0337 S23: 0.3632 REMARK 3 S31: -0.4832 S32: -0.1133 S33: -0.1553 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6873 -5.7297 -12.6685 REMARK 3 T TENSOR REMARK 3 T11: 0.2784 T22: 0.2183 REMARK 3 T33: 0.2531 T12: 0.0269 REMARK 3 T13: 0.0448 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.2876 L22: 0.8655 REMARK 3 L33: 1.9922 L12: -0.2925 REMARK 3 L13: -0.5672 L23: 1.0579 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0459 S13: -0.1036 REMARK 3 S21: 0.1458 S22: -0.0608 S23: 0.0407 REMARK 3 S31: 0.3229 S32: -0.0427 S33: 0.0549 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4121 2.6943 -27.3695 REMARK 3 T TENSOR REMARK 3 T11: 0.3206 T22: 0.2583 REMARK 3 T33: 0.2500 T12: 0.0648 REMARK 3 T13: 0.0100 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.5486 L22: 2.9666 REMARK 3 L33: 0.0912 L12: -0.6082 REMARK 3 L13: -0.1925 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.1700 S13: 0.0926 REMARK 3 S21: -0.4612 S22: -0.1533 S23: -0.1399 REMARK 3 S31: 0.0082 S32: 0.0788 S33: 0.1464 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9183 -12.3590 -14.8393 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.3381 REMARK 3 T33: 0.3457 T12: 0.0833 REMARK 3 T13: 0.0693 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 1.7740 L22: 2.4096 REMARK 3 L33: 4.1290 L12: -0.2616 REMARK 3 L13: 0.2946 L23: -0.9545 REMARK 3 S TENSOR REMARK 3 S11: -0.3254 S12: -0.4155 S13: -0.3737 REMARK 3 S21: 0.2927 S22: 0.0528 S23: -0.3325 REMARK 3 S31: 0.4389 S32: 0.0962 S33: 0.1595 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5931 -1.0020 -22.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.2701 T22: 0.2642 REMARK 3 T33: 0.2416 T12: 0.0644 REMARK 3 T13: 0.0175 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 1.8976 L22: 1.7860 REMARK 3 L33: 1.6816 L12: 0.1634 REMARK 3 L13: 0.2651 L23: 0.9606 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: 0.0145 S13: -0.0796 REMARK 3 S21: -0.3338 S22: 0.0387 S23: 0.0331 REMARK 3 S31: -0.0646 S32: 0.0274 S33: 0.1195 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1163 -2.9034 -16.6364 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.2387 REMARK 3 T33: 0.2021 T12: 0.0129 REMARK 3 T13: 0.0578 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.3043 L22: 2.5135 REMARK 3 L33: 3.2663 L12: 0.1105 REMARK 3 L13: 1.3266 L23: 1.1310 REMARK 3 S TENSOR REMARK 3 S11: 0.1970 S12: 0.1179 S13: 0.1174 REMARK 3 S21: -0.0499 S22: -0.0402 S23: -0.0051 REMARK 3 S31: -0.2633 S32: 0.3429 S33: -0.1470 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 53.815 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 1.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 30% PEG 2000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.63000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.44500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.81500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.63000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.81500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 161.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 339 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 352 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 359 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 360 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 348 O HOH B 354 1.97 REMARK 500 OD1 ASP B 20 O HOH B 301 2.02 REMARK 500 O HOH B 335 O HOH B 347 2.04 REMARK 500 O LYS B 157 O HOH B 302 2.11 REMARK 500 O HOH A 107 O HOH A 109 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 330 O HOH B 330 8554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 30 -162.81 -109.62 REMARK 500 CYS B 80 -0.01 69.64 REMARK 500 LEU B 92 -32.31 -131.16 REMARK 500 SER B 160 -169.97 -101.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUU B 201 DBREF 6KK3 A 50 87 UNP Q32ZE1 POLG_ZIKV 1418 1455 DBREF1 6KK3 B 17 170 UNP A0A142IX72_ZIKV DBREF2 6KK3 B A0A142IX72 1513 1666 SEQRES 1 A 38 ASP MET TYR ILE GLU ARG ALA GLY ASP ILE THR TRP GLU SEQRES 2 A 38 LYS ASP ALA GLU VAL THR GLY ASN SER PRO ARG LEU ASP SEQRES 3 A 38 VAL ALA LEU ASP GLU SER GLY ASP PHE SER LEU VAL SEQRES 1 B 154 GLU THR THR ASP GLY VAL TYR ARG VAL MET THR ARG ARG SEQRES 2 B 154 LEU LEU GLY SER THR GLN VAL GLY VAL GLY VAL MET GLN SEQRES 3 B 154 GLU GLY VAL PHE HIS THR MET TRP HIS VAL THR LYS GLY SEQRES 4 B 154 ALA ALA LEU ARG SER GLY GLU GLY ARG LEU ASP PRO TYR SEQRES 5 B 154 TRP GLY ASP VAL LYS GLN ASP LEU VAL SER TYR CYS GLY SEQRES 6 B 154 PRO TRP LYS LEU ASP ALA ALA TRP ASP GLY LEU SER GLU SEQRES 7 B 154 VAL GLN LEU LEU ALA VAL PRO PRO GLY GLU ARG ALA LYS SEQRES 8 B 154 ASN ILE GLN THR LEU PRO GLY ILE PHE LYS THR LYS ASP SEQRES 9 B 154 GLY ASP ILE GLY ALA VAL ALA LEU ASP TYR PRO ALA GLY SEQRES 10 B 154 THR SER GLY SER PRO ILE LEU ASP LYS CYS GLY ARG VAL SEQRES 11 B 154 ILE GLY LEU TYR GLY ASN GLY VAL VAL ILE LYS ASN GLY SEQRES 12 B 154 SER TYR VAL SER ALA ILE THR GLN GLY LYS ARG HET DUU B 201 101 HETNAM DUU 1-[(10~{R},17~{S},20~{S})-17,20-BIS(4-AZANYLBUTYL)-4,9, HETNAM 2 DUU 16,19,22-PENTAKIS(OXIDANYLIDENE)-3,8,15,18,21- HETNAM 3 DUU PENTAZABICYCLO[22.2.2]OCTACOSA-1(26),24,27-TRIEN-10- HETNAM 4 DUU YL]GUANIDINE FORMUL 3 DUU C32 H54 N10 O5 FORMUL 4 HOH *76(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 MET A 51 GLY A 57 1 N MET A 51 O ARG B 59 SHEET 4 AA1 8 GLY B 21 THR B 27 -1 O VAL B 22 N ALA A 56 SHEET 5 AA1 8 THR B 34 GLN B 42 -1 O MET B 41 N GLY B 21 SHEET 6 AA1 8 VAL B 45 MET B 49 -1 O VAL B 45 N GLN B 42 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SITE 1 AC1 22 GLU A 66 GLY A 82 ASP A 83 PHE A 84 SITE 2 AC1 22 SER A 85 HOH A 102 HIS B 51 ASP B 129 SITE 3 AC1 22 TYR B 130 ALA B 132 SER B 135 GLY B 151 SITE 4 AC1 22 ASN B 152 GLY B 153 VAL B 155 GLY B 159 SITE 5 AC1 22 TYR B 161 HOH B 303 HOH B 307 HOH B 313 SITE 6 AC1 22 HOH B 318 HOH B 341 CRYST1 42.580 42.580 215.260 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004646 0.00000