HEADER VIRAL PROTEIN 23-JUL-19 6KK4 TITLE CRYSTAL STRUCTURE OF ZIKA NS2B-NS3 PROTEASE WITH COMPOUND 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS2B COFACTOR; COMPND 5 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS3 PROTEASE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 9 ORGANISM_COMMON: ZIKV; SOURCE 10 ORGANISM_TAXID: 64320; SOURCE 11 STRAIN: MR 766; SOURCE 12 GENE: GP1, A2G93_63394GPGP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, PROTEASE INHIBITOR COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.QUEK REVDAT 3 22-NOV-23 6KK4 1 REMARK REVDAT 2 19-AUG-20 6KK4 1 JRNL REVDAT 1 17-JUN-20 6KK4 0 JRNL AUTH N.J.BRAUN,J.P.QUEK,S.HUBER,J.KOURETOVA,D.ROGGE, JRNL AUTH 2 H.LANG-HENKEL,E.Z.K.CHEONG,B.L.A.CHEW,A.HEINE,D.LUO, JRNL AUTH 3 T.STEINMETZER JRNL TITL STRUCTURE-BASED MACROCYCLIZATION OF SUBSTRATE ANALOGUE JRNL TITL 2 NS2B-NS3 PROTEASE INHIBITORS OF ZIKA, WEST NILE AND DENGUE JRNL TITL 3 VIRUSES. JRNL REF CHEMMEDCHEM V. 15 1439 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 32501637 JRNL DOI 10.1002/CMDC.202000237 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.8076 - 1.7400 0.97 2644 123 0.2120 0.2430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2360 -30.2900 10.2877 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.1650 REMARK 3 T33: 0.2932 T12: -0.0163 REMARK 3 T13: -0.0361 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.8691 L22: 4.9460 REMARK 3 L33: 6.0331 L12: -0.1673 REMARK 3 L13: 0.7212 L23: 1.9017 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0678 S13: -0.4745 REMARK 3 S21: -0.0526 S22: -0.0190 S23: -0.0081 REMARK 3 S31: 0.4847 S32: 0.1046 S33: -0.0372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3831 -18.3754 28.6439 REMARK 3 T TENSOR REMARK 3 T11: 0.4676 T22: 0.3471 REMARK 3 T33: 0.2469 T12: -0.0600 REMARK 3 T13: -0.0970 T23: 0.0927 REMARK 3 L TENSOR REMARK 3 L11: 3.2121 L22: 5.5714 REMARK 3 L33: 2.6014 L12: 0.8003 REMARK 3 L13: 2.0700 L23: -2.0937 REMARK 3 S TENSOR REMARK 3 S11: 0.4358 S12: -1.3071 S13: -0.8037 REMARK 3 S21: 1.3424 S22: -0.6419 S23: -0.4689 REMARK 3 S31: 0.2706 S32: 0.5698 S33: 0.1389 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1990 -3.8401 8.1291 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1091 REMARK 3 T33: 0.1530 T12: 0.0292 REMARK 3 T13: 0.0294 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 4.8845 L22: 3.1993 REMARK 3 L33: 7.2515 L12: 1.5061 REMARK 3 L13: 3.1222 L23: -0.5368 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: 0.1217 S13: 0.1398 REMARK 3 S21: 0.0832 S22: 0.0035 S23: -0.0300 REMARK 3 S31: -0.2810 S32: 0.2497 S33: 0.0831 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6023 -29.8766 10.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.1311 REMARK 3 T33: 0.2076 T12: -0.0406 REMARK 3 T13: -0.0525 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 6.2904 L22: 6.7749 REMARK 3 L33: 8.2422 L12: 0.2811 REMARK 3 L13: -0.8092 L23: 1.0994 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: 0.1851 S13: -0.6106 REMARK 3 S21: 0.1259 S22: -0.1447 S23: 0.2482 REMARK 3 S31: 0.8139 S32: -0.6431 S33: 0.0383 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7008 -24.6127 6.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.0952 REMARK 3 T33: 0.1165 T12: 0.0036 REMARK 3 T13: -0.0166 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 4.5344 L22: 4.2100 REMARK 3 L33: 3.7285 L12: 0.9247 REMARK 3 L13: 0.6848 L23: -1.2003 REMARK 3 S TENSOR REMARK 3 S11: 0.0903 S12: 0.1109 S13: -0.3002 REMARK 3 S21: -0.1119 S22: -0.0525 S23: 0.0190 REMARK 3 S31: 0.4033 S32: 0.0325 S33: 0.0403 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2576 -23.0940 2.1664 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1611 REMARK 3 T33: 0.1170 T12: -0.0091 REMARK 3 T13: -0.0226 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.9205 L22: 6.8954 REMARK 3 L33: 3.5843 L12: 0.9462 REMARK 3 L13: 1.0135 L23: -0.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: 0.0156 S13: -0.2730 REMARK 3 S21: -0.0185 S22: -0.0205 S23: 0.2281 REMARK 3 S31: 0.3096 S32: -0.2194 S33: -0.1042 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8257 -13.2909 16.4769 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.2149 REMARK 3 T33: 0.1752 T12: 0.0455 REMARK 3 T13: 0.0414 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 5.8488 L22: 4.1975 REMARK 3 L33: 8.5816 L12: 3.9551 REMARK 3 L13: 5.1384 L23: 5.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: -0.6515 S13: 0.2182 REMARK 3 S21: 0.0627 S22: -0.3566 S23: 0.4641 REMARK 3 S31: -0.1478 S32: -0.8622 S33: 0.5137 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9459 -21.0166 17.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.1703 REMARK 3 T33: 0.1818 T12: 0.0035 REMARK 3 T13: -0.0183 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.9224 L22: 3.6024 REMARK 3 L33: 7.9329 L12: -3.2525 REMARK 3 L13: -4.2483 L23: 5.2150 REMARK 3 S TENSOR REMARK 3 S11: -0.3724 S12: -0.2808 S13: -0.1101 REMARK 3 S21: 0.8195 S22: 0.3635 S23: -0.3170 REMARK 3 S31: 0.6668 S32: 0.4846 S33: -0.1052 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2671 -7.9868 17.6414 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1233 REMARK 3 T33: 0.1132 T12: -0.0058 REMARK 3 T13: 0.0227 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.1015 L22: 3.4311 REMARK 3 L33: 5.7401 L12: 1.7463 REMARK 3 L13: 0.3964 L23: -0.2752 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.0654 S13: 0.1065 REMARK 3 S21: 0.5198 S22: -0.1311 S23: -0.3861 REMARK 3 S31: -0.1386 S32: 0.1523 S33: 0.2334 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5679 -11.1017 12.5644 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1298 REMARK 3 T33: 0.1054 T12: 0.0059 REMARK 3 T13: -0.0142 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.8838 L22: 3.4979 REMARK 3 L33: 3.2069 L12: 0.5672 REMARK 3 L13: -0.7411 L23: -0.2024 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.1387 S13: 0.0184 REMARK 3 S21: 0.1561 S22: -0.0154 S23: 0.0970 REMARK 3 S31: -0.1095 S32: -0.0341 S33: -0.0157 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1040 -14.9598 10.0462 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.6086 REMARK 3 T33: 0.4155 T12: -0.0554 REMARK 3 T13: 0.0297 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 5.3909 L22: 0.2354 REMARK 3 L33: 1.3796 L12: 1.1169 REMARK 3 L13: 2.5458 L23: 0.5761 REMARK 3 S TENSOR REMARK 3 S11: -0.1987 S12: -0.4217 S13: 0.2548 REMARK 3 S21: -0.0991 S22: -0.0443 S23: 0.5399 REMARK 3 S31: -0.0018 S32: -1.0093 S33: 0.0854 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 41.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 25% PEG 4000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.41400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.59800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.21600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.59800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.41400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.21600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 LEU B 31 CG CD1 CD2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 128 O HOH A 130 1.86 REMARK 500 O HOH B 311 O HOH B 356 1.95 REMARK 500 O HOH B 342 O HOH B 357 2.01 REMARK 500 OE2 GLU B 171 O HOH B 301 2.04 REMARK 500 O HOH B 379 O HOH B 398 2.05 REMARK 500 OE2 GLU B 177 O HOH B 302 2.10 REMARK 500 O HOH B 340 O HOH B 349 2.11 REMARK 500 O HOH B 394 O HOH B 396 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 124 O HOH B 404 4545 1.70 REMARK 500 CA GLY B 91 NH2 ARG B 105 3555 1.84 REMARK 500 O HOH A 127 O HOH B 337 3545 2.00 REMARK 500 C GLY B 91 NH1 ARG B 105 3555 2.07 REMARK 500 O GLY B 91 NH1 ARG B 105 3555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 105 CB ARG B 105 CG 0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 92 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG B 105 CG - CD - NE ANGL. DEV. = -26.1 DEGREES REMARK 500 ARG B 105 NE - CZ - NH1 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 53.33 -115.57 REMARK 500 ARG B 29 -103.96 -108.72 REMARK 500 CYS B 80 -10.24 79.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DE0 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 DBREF 6KK4 A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF1 6KK4 B 1 177 UNP A0A142IX72_ZIKV DBREF2 6KK4 B A0A142IX72 1497 1673 SEQADV 6KK4 MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 6KK4 THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 6KK4 GLY B 0 UNP A0A142IX7 EXPRESSION TAG SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET DE0 B 201 46 HET GOL B 202 14 HETNAM DE0 1-[(9~{R},16~{S},19~{S})-16,19-BIS(4-AZANYLBUTYL)-4,8, HETNAM 2 DE0 15,18,21-PENTAKIS(OXIDANYLIDENE)-3,7,14,17,20- HETNAM 3 DE0 PENTAZABICYCLO[21.3.1]HEPTACOSA-1(26),23(27),24-TRIEN- HETNAM 4 DE0 9-YL]GUANIDINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DE0 C31 H52 N10 O5 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *143(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 ASP A 50 GLY A 57 1 N ILE A 53 O ARG B 59 SHEET 4 AA1 8 GLY B 21 ARG B 28 -1 O VAL B 22 N ALA A 56 SHEET 5 AA1 8 SER B 33 GLN B 42 -1 O GLY B 37 N VAL B 25 SHEET 6 AA1 8 VAL B 45 MET B 49 -1 O HIS B 47 N VAL B 40 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O TYR B 79 N PHE B 46 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TYR B 68 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SITE 1 AC1 30 GLY A 82 ASP A 83 PHE A 84 TRP B 50 SITE 2 AC1 30 HIS B 51 TYR B 68 GLY B 70 ASP B 71 SITE 3 AC1 30 VAL B 72 ASP B 129 TYR B 130 ALA B 132 SITE 4 AC1 30 SER B 135 GLY B 151 ASN B 152 GLY B 153 SITE 5 AC1 30 VAL B 155 GLY B 159 TYR B 161 VAL B 176 SITE 6 AC1 30 GLU B 177 HOH B 318 HOH B 323 HOH B 324 SITE 7 AC1 30 HOH B 325 HOH B 334 HOH B 342 HOH B 373 SITE 8 AC1 30 HOH B 376 HOH B 382 SITE 1 AC2 5 ALA B 88 TRP B 89 GLY B 124 ILE B 147 SITE 2 AC2 5 ILE B 165 CRYST1 48.828 60.432 83.196 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012020 0.00000