HEADER TRANSCRIPTION 24-JUL-19 6KKB TITLE A NOVEL AGONIST OF THRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR BETA; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 1 GROUP A MEMBER 2,C-ERBA-2,C- COMPND 5 ERBA-BETA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SRC2-3; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRB, ERBA2, NR1A2, THR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS AGONIST, THYROID HORMONE RECEPTOR, ANEMIA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.Q.YAO,Y.LI REVDAT 3 22-NOV-23 6KKB 1 REMARK REVDAT 2 04-MAR-20 6KKB 1 JRNL REVDAT 1 23-OCT-19 6KKB 0 JRNL AUTH B.YAO,Y.WEI,S.ZHANG,S.TIAN,S.XU,R.WANG,W.ZHENG,Y.LI JRNL TITL REVEALING A MUTANT-INDUCED RECEPTOR ALLOSTERIC MECHANISM FOR JRNL TITL 2 THE THYROID HORMONE RESISTANCE. JRNL REF ISCIENCE V. 20 489 2019 JRNL REFN ESSN 2589-0042 JRNL PMID 31655060 JRNL DOI 10.1016/J.ISCI.2019.10.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.JIN,Y.LI REMARK 1 TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO NUCLEAR RECEPTOR REMARK 1 TITL 2 SIGNALING. REMARK 1 REF ADV. DRUG DELIV. REV. V. 62 1218 2010 REMARK 1 REFN ISSN 1872-8294 REMARK 1 PMID 20723571 REMARK 1 DOI 10.1016/J.ADDR.2010.08.007 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1788 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2054 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1956 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2787 ; 2.334 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4489 ; 1.166 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 5.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;31.585 ;23.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;14.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.289 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2280 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 211 X 460 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8340 -16.6200 7.7820 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.0467 REMARK 3 T33: 0.0312 T12: -0.0265 REMARK 3 T13: -0.0130 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.0084 L22: 1.0660 REMARK 3 L33: 0.8063 L12: 0.4550 REMARK 3 L13: -0.2360 L23: 0.2468 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: 0.0859 S13: -0.0192 REMARK 3 S21: -0.0394 S22: 0.0658 S23: 0.0125 REMARK 3 S31: -0.0611 S32: -0.0140 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 741 D 751 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1930 0.0920 -0.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.0997 T22: 0.0570 REMARK 3 T33: 0.0928 T12: 0.0464 REMARK 3 T13: -0.0519 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 9.4682 L22: 7.6159 REMARK 3 L33: 4.2532 L12: -0.3180 REMARK 3 L13: -3.4227 L23: 2.3617 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: 0.4660 S13: -0.1419 REMARK 3 S21: -0.5030 S22: -0.0238 S23: 0.2304 REMARK 3 S31: -0.3778 S32: -0.2999 S33: -0.1355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6KKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 25.90 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 26.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XZX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 20%(W/V) POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.83300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.83300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.71250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.83300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.83300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.23750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.83300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.83300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.71250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.83300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.83300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 14.23750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 856 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 897 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 916 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 974 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL X 256 REMARK 465 ASN X 257 REMARK 465 ALA X 258 REMARK 465 PRO X 259 REMARK 465 GLU X 260 REMARK 465 GLY X 261 REMARK 465 GLY X 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X 217 CG CD OE1 OE2 REMARK 470 LYS X 223 CG CD CE NZ REMARK 470 GLU X 227 CG CD OE1 OE2 REMARK 470 LYS X 242 CG CD CE NZ REMARK 470 PRO X 254 CG CD REMARK 470 LYS X 274 CG CD CE NZ REMARK 470 GLU X 324 CG CD OE1 OE2 REMARK 470 GLU X 390 CG CD OE1 OE2 REMARK 470 GLU X 393 CG CD OE1 OE2 REMARK 470 LYS X 394 CG CD CE NZ REMARK 470 GLU X 445 CG CD OE1 OE2 REMARK 470 GLU X 449 CG CD OE1 OE2 REMARK 470 LEU X 450 CG CD1 CD2 REMARK 470 GLU X 460 CG CD OE1 OE2 REMARK 470 GLU D 741 CG CD OE1 OE2 REMARK 470 ASP D 750 CG OD1 OD2 REMARK 470 LYS D 751 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 602 O HOH X 731 1.09 REMARK 500 O HOH X 699 O HOH X 844 1.10 REMARK 500 O HOH X 616 O HOH X 646 1.11 REMARK 500 O HOH X 728 O HOH X 792 1.11 REMARK 500 O HOH X 950 O HOH X 965 1.17 REMARK 500 O HOH X 748 O HOH X 822 1.19 REMARK 500 O HOH X 737 O HOH X 815 1.19 REMARK 500 O HOH X 603 O HOH X 761 1.19 REMARK 500 O HOH X 693 O HOH X 786 1.20 REMARK 500 O HOH X 698 O HOH X 750 1.25 REMARK 500 O HOH X 803 O HOH X 820 1.30 REMARK 500 O HOH X 787 O HOH X 829 1.33 REMARK 500 O HOH X 613 O HOH X 741 1.34 REMARK 500 O HOH X 831 O HOH X 918 1.37 REMARK 500 O HOH X 675 O HOH X 840 1.41 REMARK 500 O HOH X 618 O HOH X 726 1.41 REMARK 500 CB CYS X 309 O HOH X 842 1.45 REMARK 500 O HOH X 667 O HOH X 722 1.61 REMARK 500 O HOH X 797 O HOH X 907 1.77 REMARK 500 O HOH X 683 O HOH X 879 1.78 REMARK 500 O HOH X 883 O HOH X 895 1.78 REMARK 500 O HOH X 697 O HOH X 913 1.81 REMARK 500 O HOH X 701 O HOH X 716 1.85 REMARK 500 O HOH X 656 O HOH X 802 1.86 REMARK 500 O HOH X 850 O HOH X 888 1.87 REMARK 500 O HOH X 722 O HOH X 853 1.88 REMARK 500 O HOH X 841 O HOH X 880 1.95 REMARK 500 O HOH X 906 O HOH X 929 2.01 REMARK 500 O HOH X 817 O HOH X 844 2.04 REMARK 500 O HOH X 862 O HOH X 863 2.06 REMARK 500 O HOH X 776 O HOH X 919 2.08 REMARK 500 O HOH X 605 O HOH X 860 2.09 REMARK 500 O HOH X 637 O HOH X 831 2.10 REMARK 500 O HOH X 881 O HOH X 955 2.10 REMARK 500 O HOH X 740 O HOH X 941 2.11 REMARK 500 OE2 GLU X 220 O HOH X 601 2.13 REMARK 500 O HOH X 860 O HOH X 955 2.13 REMARK 500 O HOH X 631 O HOH X 937 2.18 REMARK 500 O HOH X 927 O HOH X 961 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 764 O HOH D 804 3544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 243 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN X 235 -3.89 65.61 REMARK 500 GLU X 333 -20.85 -144.39 REMARK 500 CYS X 388 53.42 -98.40 REMARK 500 HIS X 413 49.90 -96.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 971 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH X 972 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH X 973 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH X 974 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH X 976 DISTANCE = 6.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HO X 501 DBREF 6KKB X 211 460 UNP P10828 THB_HUMAN 211 460 DBREF 6KKB D 741 751 PDB 6KKB 6KKB 741 751 SEQRES 1 X 250 LYS PRO GLU PRO THR ASP GLU GLU TRP GLU LEU ILE LYS SEQRES 2 X 250 THR VAL THR GLU ALA HIS VAL ALA THR ASN ALA GLN GLY SEQRES 3 X 250 SER HIS TRP LYS GLN LYS ARG LYS PHE LEU PRO GLU ASP SEQRES 4 X 250 ILE GLY GLN ALA PRO ILE VAL ASN ALA PRO GLU GLY GLY SEQRES 5 X 250 LYS VAL ASP LEU GLU ALA PHE SER HIS PHE THR LYS ILE SEQRES 6 X 250 ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE ALA LYS SEQRES 7 X 250 LYS LEU PRO MET PHE CYS GLU LEU PRO CYS GLU ASP GLN SEQRES 8 X 250 ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE MET SER SEQRES 9 X 250 LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER GLU THR SEQRES 10 X 250 LEU THR LEU ASN GLY GLU MET ALA VAL THR ARG GLY GLN SEQRES 11 X 250 LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP ALA ILE SEQRES 12 X 250 PHE ASP LEU GLY MET SER LEU SER SER PHE ASN LEU ASP SEQRES 13 X 250 ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU LEU MET SEQRES 14 X 250 SER SER ASP ARG PRO GLY LEU ALA CYS VAL GLU ARG ILE SEQRES 15 X 250 GLU LYS TYR GLN ASP SER PHE LEU LEU ALA PHE GLU HIS SEQRES 16 X 250 TYR ILE ASN TYR ARG LYS HIS HIS VAL THR HIS PHE TRP SEQRES 17 X 250 PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG MET ILE SEQRES 18 X 250 GLY ALA CYS HIS ALA SER ARG PHE LEU HIS MET LYS VAL SEQRES 19 X 250 GLU CYS PRO THR GLU LEU PHE PRO PRO LEU PHE LEU GLU SEQRES 20 X 250 VAL PHE GLU SEQRES 1 D 11 GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS HET 8HO X 501 26 HETNAM 8HO 2-[(1-METHYL-4-OXIDANYL-7-PHENOXY-ISOQUINOLIN-3-YL) HETNAM 2 8HO CARBONYLAMINO]ETHANOIC ACID FORMUL 3 8HO C19 H16 N2 O5 FORMUL 4 HOH *383(H2 O) HELIX 1 AA1 THR X 215 ALA X 231 1 17 HELIX 2 AA2 GLN X 235 SER X 237 5 3 HELIX 3 AA3 HIS X 238 ARG X 243 1 6 HELIX 4 AA4 ASP X 265 LYS X 289 1 25 HELIX 5 AA5 LEU X 290 GLU X 295 1 6 HELIX 6 AA6 PRO X 297 VAL X 319 1 23 HELIX 7 AA7 ARG X 338 GLY X 344 1 7 HELIX 8 AA8 GLY X 347 SER X 361 1 15 HELIX 9 AA9 SER X 362 ASN X 364 5 3 HELIX 10 AB1 ASP X 366 MET X 379 1 14 HELIX 11 AB2 CYS X 388 LYS X 411 1 24 HELIX 12 AB3 HIS X 416 CYS X 446 1 31 HELIX 13 AB4 PRO X 447 PHE X 451 5 5 HELIX 14 AB5 PRO X 452 GLU X 460 1 9 HELIX 15 AB6 ASN D 742 LYS D 751 1 10 SHEET 1 AA1 3 LYS X 244 PHE X 245 0 SHEET 2 AA1 3 MET X 334 THR X 337 1 O ALA X 335 N LYS X 244 SHEET 3 AA1 3 THR X 327 LEU X 330 -1 N LEU X 330 O MET X 334 SITE 1 AC1 13 ILE X 275 ILE X 276 ARG X 282 MET X 313 SITE 2 AC1 13 SER X 314 ALA X 317 LEU X 330 ASN X 331 SITE 3 AC1 13 GLY X 344 LEU X 346 HOH X 659 HOH X 674 SITE 4 AC1 13 HOH X 723 CRYST1 105.666 105.666 56.950 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017559 0.00000