HEADER VIRAL PROTEIN 29-JUL-19 6KL6 TITLE CRYSTAL STRUCTURE OF MERS-COV N-NTD COMPLEXED WITH 5-BENZYLOXYGRAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 3 CORONAVIRUS; SOURCE 4 ORGANISM_TAXID: 1335626; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS, NUCLEOCAPSID PROTEIN, KEYWDS 2 N-TERMINAL DOMAIN, 5-BENZYLOXYGRAMINE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.H.HOU,S.M.LIN,Y.S.WANG,J.N.HSU REVDAT 3 22-NOV-23 6KL6 1 REMARK REVDAT 2 08-APR-20 6KL6 1 JRNL REVDAT 1 25-MAR-20 6KL6 0 JRNL AUTH S.M.LIN,S.C.LIN,J.N.HSU,C.K.CHANG,C.M.CHIEN,Y.S.WANG,H.Y.WU, JRNL AUTH 2 U.S.JENG,K.KEHN-HALL,M.H.HOU JRNL TITL STRUCTURE-BASED STABILIZATION OF NON-NATIVE PROTEIN-PROTEIN JRNL TITL 2 INTERACTIONS OF CORONAVIRUS NUCLEOCAPSID PROTEINS IN JRNL TITL 3 ANTIVIRAL DRUG DESIGN. JRNL REF J.MED.CHEM. V. 63 3131 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32105468 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01913 REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 17363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.3006 - 5.0090 1.00 1294 148 0.2102 0.2496 REMARK 3 2 5.0090 - 4.3782 1.00 1324 144 0.2067 0.2102 REMARK 3 3 4.3782 - 3.9790 1.00 1313 148 0.2102 0.2468 REMARK 3 4 3.9790 - 3.6944 1.00 1339 147 0.2102 0.2630 REMARK 3 5 3.6944 - 3.4769 1.00 1298 148 0.2102 0.2951 REMARK 3 6 3.4769 - 3.3030 1.00 1302 141 0.2102 0.2868 REMARK 3 7 3.3030 - 3.1594 0.99 1285 141 0.2102 0.2736 REMARK 3 8 3.1594 - 3.0379 0.99 1316 148 0.2102 0.3065 REMARK 3 9 3.0379 - 2.9332 0.99 1290 141 0.2102 0.3331 REMARK 3 10 2.9332 - 2.8415 0.99 1292 144 0.2102 0.3187 REMARK 3 11 2.8415 - 2.7700 0.95 1240 141 0.2102 0.3369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3698 REMARK 3 ANGLE : 1.339 5064 REMARK 3 CHIRALITY : 0.056 519 REMARK 3 PLANARITY : 0.008 663 REMARK 3 DIHEDRAL : 2.993 2102 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300001472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4J3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN, 25 MM TRIS-HCL, PH REMARK 280 7.5, 75 MM NACL, 70 MM MES, PH5.5, 37.5 M (NH4)2SO4, 14.5 % PEG REMARK 280 3350, 1 MM NABR, 1 MM 5-BENZYLOXYGRAMINE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.23850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 LEU A 31 REMARK 465 VAL A 32 REMARK 465 PRO A 33 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 GLY A 51 REMARK 465 ASN A 86 REMARK 465 THR A 87 REMARK 465 GLY A 88 REMARK 465 ASN A 89 REMARK 465 GLY A 90 REMARK 465 ILE A 91 REMARK 465 LYS A 92 REMARK 465 ASP A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 164 REMARK 465 THR A 165 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 GLY B 30 REMARK 465 LEU B 31 REMARK 465 VAL B 32 REMARK 465 PRO B 33 REMARK 465 ARG B 34 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 HIS B 37 REMARK 465 MET B 38 REMARK 465 ASN B 39 REMARK 465 THR B 40 REMARK 465 ASN B 86 REMARK 465 THR B 87 REMARK 465 GLY B 88 REMARK 465 ASN B 89 REMARK 465 GLY B 90 REMARK 465 ILE B 91 REMARK 465 LYS B 92 REMARK 465 GLN B 93 REMARK 465 THR B 165 REMARK 465 HIS C 22 REMARK 465 HIS C 23 REMARK 465 HIS C 24 REMARK 465 HIS C 25 REMARK 465 HIS C 26 REMARK 465 HIS C 27 REMARK 465 SER C 28 REMARK 465 SER C 29 REMARK 465 GLY C 30 REMARK 465 LEU C 31 REMARK 465 VAL C 32 REMARK 465 PRO C 33 REMARK 465 ARG C 34 REMARK 465 GLY C 35 REMARK 465 SER C 36 REMARK 465 HIS C 37 REMARK 465 MET C 38 REMARK 465 ASN C 39 REMARK 465 ASP C 82 REMARK 465 ARG C 83 REMARK 465 LYS C 84 REMARK 465 ILE C 85 REMARK 465 ASN C 86 REMARK 465 THR C 87 REMARK 465 GLY C 88 REMARK 465 ASN C 89 REMARK 465 GLY C 90 REMARK 465 ILE C 91 REMARK 465 LYS C 92 REMARK 465 GLN C 93 REMARK 465 LEU C 94 REMARK 465 ALA C 95 REMARK 465 LYS C 158 REMARK 465 ASN C 159 REMARK 465 THR C 165 REMARK 465 HIS D 22 REMARK 465 HIS D 23 REMARK 465 HIS D 24 REMARK 465 HIS D 25 REMARK 465 HIS D 26 REMARK 465 HIS D 27 REMARK 465 SER D 28 REMARK 465 SER D 29 REMARK 465 GLY D 30 REMARK 465 LEU D 31 REMARK 465 VAL D 32 REMARK 465 PRO D 33 REMARK 465 ARG D 34 REMARK 465 GLY D 35 REMARK 465 SER D 36 REMARK 465 HIS D 37 REMARK 465 MET D 38 REMARK 465 ASN D 39 REMARK 465 GLN D 81 REMARK 465 ASP D 82 REMARK 465 ARG D 83 REMARK 465 LYS D 84 REMARK 465 ILE D 85 REMARK 465 ASN D 86 REMARK 465 THR D 87 REMARK 465 GLY D 88 REMARK 465 ASN D 89 REMARK 465 GLY D 90 REMARK 465 ILE D 91 REMARK 465 LYS D 92 REMARK 465 GLN D 93 REMARK 465 LEU D 94 REMARK 465 THR D 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN C 74 OE2 GLU C 125 1.54 REMARK 500 OG1 THR D 48 CD ARG D 97 1.77 REMARK 500 O HOH A 215 O HOH A 218 1.88 REMARK 500 O HIS A 37 CG2 THR A 40 1.88 REMARK 500 NE2 GLN A 73 O HOH A 201 1.92 REMARK 500 O GLY D 164 O HOH D 301 1.94 REMARK 500 O PRO B 152 O HOH B 201 1.98 REMARK 500 OE1 GLU A 125 O HOH A 202 2.00 REMARK 500 O TYR D 102 OG1 THR D 105 2.00 REMARK 500 O HOH C 207 O HOH C 212 2.01 REMARK 500 NH1 ARG D 80 O HOH D 302 2.02 REMARK 500 O GLY B 136 O HOH B 202 2.03 REMARK 500 O PRO A 59 O HOH A 203 2.04 REMARK 500 O PRO A 132 O HOH A 204 2.04 REMARK 500 OG SER C 42 O PHE C 100 2.04 REMARK 500 N ILE A 85 O HOH A 205 2.06 REMARK 500 O PRO C 157 O HOH C 201 2.08 REMARK 500 N ASN C 142 O HOH C 202 2.09 REMARK 500 O ALA D 151 OG1 THR D 154 2.13 REMARK 500 O GLY C 46 OE1 GLU C 163 2.14 REMARK 500 O TYR C 102 CG2 THR C 105 2.15 REMARK 500 O GLY D 51 O HOH D 303 2.15 REMARK 500 CG ASN C 74 OE2 GLU C 125 2.16 REMARK 500 O ALA B 151 OG1 THR B 154 2.16 REMARK 500 O HOH D 325 O HOH D 327 2.17 REMARK 500 N VAL D 116 O HOH D 304 2.19 REMARK 500 NE ARG C 80 O HOH C 203 2.19 REMARK 500 O ASP C 118 O HOH C 204 2.19 REMARK 500 NE2 GLN A 49 O VAL A 53 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 144 NE2 GLN C 149 1655 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY C 127 N - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 53 105.15 -58.83 REMARK 500 VAL C 116 81.29 -69.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP B 130 12.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DJU D 201 DBREF1 6KL6 A 39 165 UNP A0A0D3MU65_9BETC DBREF2 6KL6 A A0A0D3MU65 39 165 DBREF1 6KL6 B 39 165 UNP A0A0D3MU65_9BETC DBREF2 6KL6 B A0A0D3MU65 39 165 DBREF1 6KL6 C 39 165 UNP A0A0D3MU65_9BETC DBREF2 6KL6 C A0A0D3MU65 39 165 DBREF1 6KL6 D 39 165 UNP A0A0D3MU65_9BETC DBREF2 6KL6 D A0A0D3MU65 39 165 SEQADV 6KL6 HIS A 22 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS A 23 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS A 24 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS A 25 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS A 26 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS A 27 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER A 28 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER A 29 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY A 30 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 LEU A 31 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 VAL A 32 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 PRO A 33 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 ARG A 34 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY A 35 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER A 36 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS A 37 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 MET A 38 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 22 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 23 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 24 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 25 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 26 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 27 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER B 28 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER B 29 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY B 30 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 LEU B 31 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 VAL B 32 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 PRO B 33 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 ARG B 34 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY B 35 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER B 36 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS B 37 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 MET B 38 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 22 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 23 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 24 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 25 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 26 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 27 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER C 28 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER C 29 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY C 30 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 LEU C 31 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 VAL C 32 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 PRO C 33 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 ARG C 34 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY C 35 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER C 36 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS C 37 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 MET C 38 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 22 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 23 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 24 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 25 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 26 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 27 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER D 28 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER D 29 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY D 30 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 LEU D 31 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 VAL D 32 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 PRO D 33 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 ARG D 34 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 GLY D 35 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 SER D 36 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 HIS D 37 UNP A0A0D3MU6 EXPRESSION TAG SEQADV 6KL6 MET D 38 UNP A0A0D3MU6 EXPRESSION TAG SEQRES 1 A 144 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 144 GLY SER HIS MET ASN THR VAL SER TRP TYR THR GLY LEU SEQRES 3 A 144 THR GLN HIS GLY LYS VAL PRO LEU THR PHE PRO PRO GLY SEQRES 4 A 144 GLN GLY VAL PRO LEU ASN ALA ASN SER THR PRO ALA GLN SEQRES 5 A 144 ASN ALA GLY TYR TRP ARG ARG GLN ASP ARG LYS ILE ASN SEQRES 6 A 144 THR GLY ASN GLY ILE LYS GLN LEU ALA PRO ARG TRP TYR SEQRES 7 A 144 PHE TYR TYR THR GLY THR GLY PRO GLU ALA ALA LEU PRO SEQRES 8 A 144 PHE ARG ALA VAL LYS ASP GLY ILE VAL TRP VAL HIS GLU SEQRES 9 A 144 ASP GLY ALA THR ASP ALA PRO SER THR PHE GLY THR ARG SEQRES 10 A 144 ASN PRO ASN ASN ASP SER ALA ILE VAL THR GLN PHE ALA SEQRES 11 A 144 PRO GLY THR LYS LEU PRO LYS ASN PHE HIS ILE GLU GLY SEQRES 12 A 144 THR SEQRES 1 B 144 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 144 GLY SER HIS MET ASN THR VAL SER TRP TYR THR GLY LEU SEQRES 3 B 144 THR GLN HIS GLY LYS VAL PRO LEU THR PHE PRO PRO GLY SEQRES 4 B 144 GLN GLY VAL PRO LEU ASN ALA ASN SER THR PRO ALA GLN SEQRES 5 B 144 ASN ALA GLY TYR TRP ARG ARG GLN ASP ARG LYS ILE ASN SEQRES 6 B 144 THR GLY ASN GLY ILE LYS GLN LEU ALA PRO ARG TRP TYR SEQRES 7 B 144 PHE TYR TYR THR GLY THR GLY PRO GLU ALA ALA LEU PRO SEQRES 8 B 144 PHE ARG ALA VAL LYS ASP GLY ILE VAL TRP VAL HIS GLU SEQRES 9 B 144 ASP GLY ALA THR ASP ALA PRO SER THR PHE GLY THR ARG SEQRES 10 B 144 ASN PRO ASN ASN ASP SER ALA ILE VAL THR GLN PHE ALA SEQRES 11 B 144 PRO GLY THR LYS LEU PRO LYS ASN PHE HIS ILE GLU GLY SEQRES 12 B 144 THR SEQRES 1 C 144 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 C 144 GLY SER HIS MET ASN THR VAL SER TRP TYR THR GLY LEU SEQRES 3 C 144 THR GLN HIS GLY LYS VAL PRO LEU THR PHE PRO PRO GLY SEQRES 4 C 144 GLN GLY VAL PRO LEU ASN ALA ASN SER THR PRO ALA GLN SEQRES 5 C 144 ASN ALA GLY TYR TRP ARG ARG GLN ASP ARG LYS ILE ASN SEQRES 6 C 144 THR GLY ASN GLY ILE LYS GLN LEU ALA PRO ARG TRP TYR SEQRES 7 C 144 PHE TYR TYR THR GLY THR GLY PRO GLU ALA ALA LEU PRO SEQRES 8 C 144 PHE ARG ALA VAL LYS ASP GLY ILE VAL TRP VAL HIS GLU SEQRES 9 C 144 ASP GLY ALA THR ASP ALA PRO SER THR PHE GLY THR ARG SEQRES 10 C 144 ASN PRO ASN ASN ASP SER ALA ILE VAL THR GLN PHE ALA SEQRES 11 C 144 PRO GLY THR LYS LEU PRO LYS ASN PHE HIS ILE GLU GLY SEQRES 12 C 144 THR SEQRES 1 D 144 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 D 144 GLY SER HIS MET ASN THR VAL SER TRP TYR THR GLY LEU SEQRES 3 D 144 THR GLN HIS GLY LYS VAL PRO LEU THR PHE PRO PRO GLY SEQRES 4 D 144 GLN GLY VAL PRO LEU ASN ALA ASN SER THR PRO ALA GLN SEQRES 5 D 144 ASN ALA GLY TYR TRP ARG ARG GLN ASP ARG LYS ILE ASN SEQRES 6 D 144 THR GLY ASN GLY ILE LYS GLN LEU ALA PRO ARG TRP TYR SEQRES 7 D 144 PHE TYR TYR THR GLY THR GLY PRO GLU ALA ALA LEU PRO SEQRES 8 D 144 PHE ARG ALA VAL LYS ASP GLY ILE VAL TRP VAL HIS GLU SEQRES 9 D 144 ASP GLY ALA THR ASP ALA PRO SER THR PHE GLY THR ARG SEQRES 10 D 144 ASN PRO ASN ASN ASP SER ALA ILE VAL THR GLN PHE ALA SEQRES 11 D 144 PRO GLY THR LYS LEU PRO LYS ASN PHE HIS ILE GLU GLY SEQRES 12 D 144 THR HET DJU D 201 41 HETNAM DJU N,N-DIMETHYL-1-(5-PHENYLMETHOXY-1H-INDOL-3-YL) HETNAM 2 DJU METHANAMINE HETSYN DJU 5-BENZYLOXYGRAMINE FORMUL 5 DJU C18 H20 N2 O FORMUL 6 HOH *110(H2 O) HELIX 1 AA1 THR A 105 ALA A 109 5 5 HELIX 2 AA2 THR B 105 ALA B 109 5 5 HELIX 3 AA3 THR C 70 GLN C 73 5 4 HELIX 4 AA4 THR D 70 GLN D 73 5 4 SHEET 1 AA1 5 ILE A 120 HIS A 124 0 SHEET 2 AA1 5 ALA A 75 GLN A 81 -1 N TRP A 78 O VAL A 121 SHEET 3 AA1 5 ARG A 97 TYR A 102 -1 O TYR A 101 N TYR A 77 SHEET 4 AA1 5 LEU A 47 GLN A 49 -1 N LEU A 47 O TRP A 98 SHEET 5 AA1 5 PHE A 160 ILE A 162 -1 O HIS A 161 N THR A 48 SHEET 1 AA2 5 ILE B 120 HIS B 124 0 SHEET 2 AA2 5 ALA B 75 GLN B 81 -1 N TRP B 78 O VAL B 121 SHEET 3 AA2 5 ARG B 97 TYR B 102 -1 O TYR B 99 N ARG B 79 SHEET 4 AA2 5 LEU B 47 GLN B 49 -1 N LEU B 47 O TRP B 98 SHEET 5 AA2 5 PHE B 160 ILE B 162 -1 O HIS B 161 N THR B 48 SHEET 1 AA3 5 ILE C 120 HIS C 124 0 SHEET 2 AA3 5 ALA C 75 ARG C 80 -1 N GLY C 76 O VAL C 123 SHEET 3 AA3 5 ARG C 97 TYR C 102 -1 O TYR C 99 N ARG C 79 SHEET 4 AA3 5 LEU C 47 THR C 48 -1 N LEU C 47 O TRP C 98 SHEET 5 AA3 5 HIS C 161 ILE C 162 -1 O HIS C 161 N THR C 48 SHEET 1 AA4 5 ILE D 120 HIS D 124 0 SHEET 2 AA4 5 ALA D 75 ARG D 79 -1 N TRP D 78 O VAL D 121 SHEET 3 AA4 5 ARG D 97 TYR D 102 -1 O TYR D 99 N ARG D 79 SHEET 4 AA4 5 LEU D 47 GLN D 49 -1 N LEU D 47 O TRP D 98 SHEET 5 AA4 5 PHE D 160 ILE D 162 -1 O HIS D 161 N THR D 48 SITE 1 AC1 13 VAL B 41 GLY B 106 ALA B 109 THR B 137 SITE 2 AC1 13 HOH B 206 TRP D 43 ASN D 66 ASN D 68 SITE 3 AC1 13 SER D 69 THR D 70 GLN D 73 PHE D 135 SITE 4 AC1 13 HOH D 314 CRYST1 35.489 108.477 91.595 90.00 101.16 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028178 0.000000 0.005559 0.00000 SCALE2 0.000000 0.009219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011128 0.00000