HEADER VIRAL PROTEIN 05-AUG-19 6KNA TITLE VIRAL UBIQUITIN FROM AUTOGRAPHA CALIFORNICA NUCLEO POLYHEDROSIS VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRAL UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AUTOGRAPHA CALIFORNICA MULTIPLE SOURCE 3 NUCLEOPOLYHEDROVIRUS; SOURCE 4 ORGANISM_TAXID: 307456; SOURCE 5 GENE: AC-V-UBI, LO84_035; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE FROM CYANA 2.1, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.NEGI,P.P.REDDY,R.DAS REVDAT 3 14-JUN-23 6KNA 1 REMARK REVDAT 2 08-JUL-20 6KNA 1 JRNL REVDAT 1 17-JUN-20 6KNA 0 JRNL AUTH H.NEGI,P.P.REDDY,V.VENGAYIL,C.PATOLE,S.LAXMAN,R.DAS JRNL TITL A NOVEL POLYUBIQUITIN CHAIN LINKAGE FORMED BY VIRAL JRNL TITL 2 UBIQUITIN IS RESISTANT TO HOST DEUBIQUITINATING ENZYMES. JRNL REF BIOCHEM.J. V. 477 2193 2020 JRNL REFN ESSN 1470-8728 JRNL PMID 32478812 JRNL DOI 10.1042/BCJ20200289 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013320. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 VIRAL UBIQUITIN PROTEIN, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HN(CO)CA; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, PINE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 63 77.85 62.80 REMARK 500 2 LYS A 63 76.83 60.38 REMARK 500 3 LYS A 63 85.70 58.83 REMARK 500 4 LYS A 63 85.33 59.35 REMARK 500 5 LYS A 63 80.86 60.66 REMARK 500 6 LYS A 63 84.68 58.55 REMARK 500 7 LYS A 63 72.90 61.43 REMARK 500 7 ARG A 74 -56.97 -122.76 REMARK 500 8 GLU A 21 82.62 -154.66 REMARK 500 8 LYS A 63 75.34 60.67 REMARK 500 8 ARG A 74 44.84 -93.97 REMARK 500 9 LYS A 63 78.35 61.01 REMARK 500 10 GLU A 21 97.02 -164.12 REMARK 500 10 LYS A 63 79.46 59.73 REMARK 500 11 LYS A 63 64.62 62.77 REMARK 500 11 SER A 65 150.38 -49.93 REMARK 500 12 GLU A 21 49.63 -145.40 REMARK 500 12 LYS A 63 80.49 61.64 REMARK 500 13 GLU A 21 59.06 -146.72 REMARK 500 13 LYS A 63 80.44 61.25 REMARK 500 14 GLU A 21 97.67 -168.52 REMARK 500 14 LYS A 63 81.48 60.88 REMARK 500 14 ARG A 74 170.03 -52.70 REMARK 500 15 LYS A 63 87.75 58.80 REMARK 500 16 LYS A 63 73.91 63.38 REMARK 500 16 ARG A 74 -61.49 -90.06 REMARK 500 17 LYS A 63 79.60 61.48 REMARK 500 18 LYS A 63 92.21 60.78 REMARK 500 19 LYS A 63 79.20 61.69 REMARK 500 20 GLU A 21 69.24 -156.18 REMARK 500 20 LYS A 63 63.69 63.31 REMARK 500 20 SER A 65 161.17 -47.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36278 RELATED DB: BMRB REMARK 900 VIRAL UBIQUITIN FROM AUTOGRAPHA CALIFORNICA NUCLEO POLYHEDROSIS REMARK 900 VIRUS DBREF1 6KNA A 1 76 UNP A0A0N7CSW3_9ABAC DBREF2 6KNA A A0A0N7CSW3 1 76 SEQRES 1 A 76 MET GLN ILE PHE ILE LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR ALA GLU THR GLU PRO ALA GLU THR VAL ALA ASP LEU SEQRES 3 A 76 LYS GLN LYS ILE ALA ASP LYS GLU GLY VAL PRO VAL ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 SER LYS THR MET ALA ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS MET VAL LEU ARG LEU ARG GLY GLY HELIX 1 AA1 GLU A 21 GLY A 35 1 15 SHEET 1 AA1 5 THR A 12 ILE A 13 0 SHEET 2 AA1 5 PHE A 4 THR A 7 -1 N ILE A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 VAL A 70 1 O LEU A 67 N LYS A 6 SHEET 4 AA1 5 ARG A 42 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 LEU A 50 -1 O LYS A 48 N PHE A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1