HEADER MEMBRANE PROTEIN 06-AUG-19 6KNM TITLE APELIN RECEPTOR IN COMPLEX WITH SINGLE DOMAIN ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: APELIN RECEPTOR,RUBREDOXIN,APELIN RECEPTOR; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ANGIOTENSIN RECEPTOR-LIKE 1,G-PROTEIN COUPLED RECEPTOR APJ, COMPND 5 G-PROTEIN COUPLED RECEPTOR HG11,RD,ANGIOTENSIN RECEPTOR-LIKE 1,G- COMPND 6 PROTEIN COUPLED RECEPTOR APJ,G-PROTEIN COUPLED RECEPTOR HG11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SINGLE DOMAIN ANTIBODY JN241; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1501; SOURCE 5 GENE: APLNR, AGTRL1, APJ; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CAMELUS BACTRIANUS; SOURCE 10 ORGANISM_TAXID: 9837; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GPCR, SINGLE-DOMAIN ANTIBODY, ANTAGONIST, AGONIST, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.MA,Y.DING,X.SONG,X.MA,X.LI,N.ZHANG,Y.SONG,Y.SUN,Y.SHEN,W.ZHONG, AUTHOR 2 L.A.HU,Y.L.MA,M.Y.ZHANG REVDAT 3 22-NOV-23 6KNM 1 REMARK REVDAT 2 12-FEB-20 6KNM 1 SPRSDE JRNL REVDAT 1 29-JAN-20 6KNM 0 JRNL AUTH Y.MA,Y.DING,X.SONG,X.MA,X.LI,N.ZHANG,Y.SONG,Y.SUN,Y.SHEN, JRNL AUTH 2 W.ZHONG,L.A.HU,Y.MA,M.Y.ZHANG JRNL TITL STRUCTURE-GUIDED DISCOVERY OF A SINGLE-DOMAIN ANTIBODY JRNL TITL 2 AGONIST AGAINST HUMAN APELIN RECEPTOR. JRNL REF SCI ADV V. 6 X7379 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 31998837 JRNL DOI 10.1126/SCIADV.AAX7379 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.860 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 12361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6400 - 5.0787 0.97 3236 171 0.2370 0.2576 REMARK 3 2 5.0787 - 4.0318 0.97 3084 162 0.2244 0.2814 REMARK 3 3 4.0318 - 3.5224 0.97 3041 161 0.2911 0.3876 REMARK 3 4 3.5224 - 3.2004 0.77 2381 125 0.3790 0.4392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -2.6352 14.0224 -43.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.7684 T22: 0.7122 REMARK 3 T33: 0.6866 T12: 0.0264 REMARK 3 T13: 0.0127 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.0748 L22: 0.0821 REMARK 3 L33: 0.0197 L12: -0.0491 REMARK 3 L13: 0.0200 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: -0.1242 S13: -0.0238 REMARK 3 S21: -0.2154 S22: -0.0286 S23: 0.0074 REMARK 3 S31: -0.0835 S32: 0.0799 S33: -0.0417 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12402 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.641 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.84 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NC2, 5VBL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.1, 26% PEG500 DME, 125 REMARK 280 MM MGCL2, 100 MM NACL, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 175.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -17 REMARK 465 LYS B -16 REMARK 465 THR B -15 REMARK 465 ILE B -14 REMARK 465 ILE B -13 REMARK 465 ALA B -12 REMARK 465 LEU B -11 REMARK 465 SER B -10 REMARK 465 TYR B -9 REMARK 465 ILE B -8 REMARK 465 PHE B -7 REMARK 465 CYS B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PHE B -3 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 TYR B 0 REMARK 465 LYS B 1 REMARK 465 ASP B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 5 REMARK 465 LYS B 6 REMARK 465 PHE B 7 REMARK 465 ASP B 8 REMARK 465 ASN B 9 REMARK 465 TYR B 10 REMARK 465 TYR B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 ASP B 14 REMARK 465 ASN B 15 REMARK 465 GLN B 16 REMARK 465 SER B 17 REMARK 465 GLN B 328 REMARK 465 SER B 329 REMARK 465 ARG B 330 REMARK 465 LEU B 331 REMARK 465 GLU B 332 REMARK 465 VAL B 333 REMARK 465 LEU B 334 REMARK 465 PHE B 335 REMARK 465 GLN B 336 REMARK 465 GLY B 337 REMARK 465 PRO B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 33 SG CYS A 109 1.43 REMARK 500 O TRP B 1037 CE LYS B 1046 1.66 REMARK 500 O TYR A 29 NH1 ARG A 100 1.92 REMARK 500 N TYR A 93 O THR A 123 1.96 REMARK 500 O VAL B 203 OG1 THR B 207 2.01 REMARK 500 OE2 GLU B 174 N ARG A 53 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 181 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 35 -38.04 -37.38 REMARK 500 VAL B 49 -9.75 -59.63 REMARK 500 ALA B 64 45.13 -78.54 REMARK 500 ARG B 91 31.62 -78.00 REMARK 500 ASP B 92 65.78 39.39 REMARK 500 TYR B 93 75.70 66.83 REMARK 500 ARG B 133 72.22 52.75 REMARK 500 ARG B 141 70.47 29.99 REMARK 500 ASN B 175 77.10 60.09 REMARK 500 TYR B 185 22.20 -76.70 REMARK 500 ALA B 229 -70.50 -42.66 REMARK 500 ASN B1025 159.60 -44.22 REMARK 500 GLU B1050 109.76 -160.07 REMARK 500 GLU B1054 83.73 -62.53 REMARK 500 ARG B 243 93.14 -38.78 REMARK 500 HIS B 278 63.50 69.95 REMARK 500 PRO B 280 153.36 -41.93 REMARK 500 ASN B 301 -8.66 -58.06 REMARK 500 CYS B 303 28.89 -76.71 REMARK 500 PHE B 312 -25.04 -144.58 REMARK 500 LEU B 325 -58.80 -29.02 REMARK 500 PHE A 37 -159.90 -116.74 REMARK 500 LYS A 43 -163.06 -117.00 REMARK 500 VAL A 48 -76.21 -116.39 REMARK 500 SER A 54 -68.74 -94.00 REMARK 500 ASP A 72 82.48 -152.06 REMARK 500 ASN A 76 79.07 45.87 REMARK 500 SER A 84 70.84 61.16 REMARK 500 ARG A 100 -157.07 -93.89 REMARK 500 TRP A 119 -166.46 -117.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 112 15.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1006 SG REMARK 620 2 CYS B1009 SG 102.9 REMARK 620 3 CYS B1039 SG 114.0 87.0 REMARK 620 4 CYS B1042 SG 134.5 108.4 100.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1101 DBREF 6KNM B 7 229 UNP P35414 APJ_HUMAN 7 229 DBREF 6KNM B 1001 1054 UNP P00268 RUBR_CLOPA 1 54 DBREF 6KNM B 243 330 UNP P35414 APJ_HUMAN 243 330 DBREF 6KNM A 1 129 PDB 6KNM 6KNM 1 129 SEQADV 6KNM MET B -17 UNP P35414 INITIATING METHIONINE SEQADV 6KNM LYS B -16 UNP P35414 EXPRESSION TAG SEQADV 6KNM THR B -15 UNP P35414 EXPRESSION TAG SEQADV 6KNM ILE B -14 UNP P35414 EXPRESSION TAG SEQADV 6KNM ILE B -13 UNP P35414 EXPRESSION TAG SEQADV 6KNM ALA B -12 UNP P35414 EXPRESSION TAG SEQADV 6KNM LEU B -11 UNP P35414 EXPRESSION TAG SEQADV 6KNM SER B -10 UNP P35414 EXPRESSION TAG SEQADV 6KNM TYR B -9 UNP P35414 EXPRESSION TAG SEQADV 6KNM ILE B -8 UNP P35414 EXPRESSION TAG SEQADV 6KNM PHE B -7 UNP P35414 EXPRESSION TAG SEQADV 6KNM CYS B -6 UNP P35414 EXPRESSION TAG SEQADV 6KNM LEU B -5 UNP P35414 EXPRESSION TAG SEQADV 6KNM VAL B -4 UNP P35414 EXPRESSION TAG SEQADV 6KNM PHE B -3 UNP P35414 EXPRESSION TAG SEQADV 6KNM ALA B -2 UNP P35414 EXPRESSION TAG SEQADV 6KNM ASP B -1 UNP P35414 EXPRESSION TAG SEQADV 6KNM TYR B 0 UNP P35414 EXPRESSION TAG SEQADV 6KNM LYS B 1 UNP P35414 EXPRESSION TAG SEQADV 6KNM ASP B 2 UNP P35414 EXPRESSION TAG SEQADV 6KNM ASP B 3 UNP P35414 EXPRESSION TAG SEQADV 6KNM ASP B 4 UNP P35414 EXPRESSION TAG SEQADV 6KNM ASP B 5 UNP P35414 EXPRESSION TAG SEQADV 6KNM LYS B 6 UNP P35414 EXPRESSION TAG SEQADV 6KNM ALA B 117 UNP P35414 VAL 117 ENGINEERED MUTATION SEQADV 6KNM ASN B 177 UNP P35414 THR 177 ENGINEERED MUTATION SEQADV 6KNM LYS B 261 UNP P35414 TRP 261 ENGINEERED MUTATION SEQADV 6KNM LEU B 325 UNP P35414 CYS 325 ENGINEERED MUTATION SEQADV 6KNM MET B 326 UNP P35414 CYS 326 ENGINEERED MUTATION SEQADV 6KNM LEU B 331 UNP P35414 EXPRESSION TAG SEQADV 6KNM GLU B 332 UNP P35414 EXPRESSION TAG SEQADV 6KNM VAL B 333 UNP P35414 EXPRESSION TAG SEQADV 6KNM LEU B 334 UNP P35414 EXPRESSION TAG SEQADV 6KNM PHE B 335 UNP P35414 EXPRESSION TAG SEQADV 6KNM GLN B 336 UNP P35414 EXPRESSION TAG SEQADV 6KNM GLY B 337 UNP P35414 EXPRESSION TAG SEQADV 6KNM PRO B 338 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 339 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 340 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 341 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 342 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 343 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 344 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 345 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 346 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 347 UNP P35414 EXPRESSION TAG SEQADV 6KNM HIS B 348 UNP P35414 EXPRESSION TAG SEQRES 1 B 407 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 B 407 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP LYS PHE ASP SEQRES 3 B 407 ASN TYR TYR GLY ALA ASP ASN GLN SER GLU CYS GLU TYR SEQRES 4 B 407 THR ASP TRP LYS SER SER GLY ALA LEU ILE PRO ALA ILE SEQRES 5 B 407 TYR MET LEU VAL PHE LEU LEU GLY THR THR GLY ASN GLY SEQRES 6 B 407 LEU VAL LEU TRP THR VAL PHE ARG SER SER ARG GLU LYS SEQRES 7 B 407 ARG ARG SER ALA ASP ILE PHE ILE ALA SER LEU ALA VAL SEQRES 8 B 407 ALA ASP LEU THR PHE VAL VAL THR LEU PRO LEU TRP ALA SEQRES 9 B 407 THR TYR THR TYR ARG ASP TYR ASP TRP PRO PHE GLY THR SEQRES 10 B 407 PHE PHE CYS LYS LEU SER SER TYR LEU ILE PHE VAL ASN SEQRES 11 B 407 MET TYR ALA SER ALA PHE CYS LEU THR GLY LEU SER PHE SEQRES 12 B 407 ASP ARG TYR LEU ALA ILE VAL ARG PRO VAL ALA ASN ALA SEQRES 13 B 407 ARG LEU ARG LEU ARG VAL SER GLY ALA VAL ALA THR ALA SEQRES 14 B 407 VAL LEU TRP VAL LEU ALA ALA LEU LEU ALA MET PRO VAL SEQRES 15 B 407 MET VAL LEU ARG THR THR GLY ASP LEU GLU ASN THR ASN SEQRES 16 B 407 LYS VAL GLN CYS TYR MET ASP TYR SER MET VAL ALA THR SEQRES 17 B 407 VAL SER SER GLU TRP ALA TRP GLU VAL GLY LEU GLY VAL SEQRES 18 B 407 SER SER THR THR VAL GLY PHE VAL VAL PRO PHE THR ILE SEQRES 19 B 407 MET LEU THR CYS TYR PHE PHE ILE ALA GLN THR ILE ALA SEQRES 20 B 407 MET LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR SEQRES 21 B 407 ASN PRO GLU ASP GLY ASP PRO ASP ASN GLY VAL ASN PRO SEQRES 22 B 407 GLY THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS SEQRES 23 B 407 PRO LEU CYS GLY VAL GLY LYS ASP GLN PHE GLU GLU VAL SEQRES 24 B 407 GLU GLU ARG ARG ARG LEU LEU SER ILE ILE VAL VAL LEU SEQRES 25 B 407 VAL VAL THR PHE ALA LEU CYS LYS MET PRO TYR HIS LEU SEQRES 26 B 407 VAL LYS THR LEU TYR MET LEU GLY SER LEU LEU HIS TRP SEQRES 27 B 407 PRO CYS ASP PHE ASP LEU PHE LEU MET ASN ILE PHE PRO SEQRES 28 B 407 TYR CYS THR CYS ILE SER TYR VAL ASN SER CYS LEU ASN SEQRES 29 B 407 PRO PHE LEU TYR ALA PHE PHE ASP PRO ARG PHE ARG GLN SEQRES 30 B 407 ALA CYS THR SER MET LEU LEU MET GLY GLN SER ARG LEU SEQRES 31 B 407 GLU VAL LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS SEQRES 32 B 407 HIS HIS HIS HIS SEQRES 1 A 129 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 A 129 SER GLY GLY SER LEU THR LEU SER CYS ALA ALA SER GLY SEQRES 3 A 129 SER THR TYR SER SER HIS CYS MET GLY TRP PHE ARG GLN SEQRES 4 A 129 ALA PRO GLY LYS GLU ARG GLU GLY VAL ALA LEU MET THR SEQRES 5 A 129 ARG SER ARG GLY THR SER TYR ALA ASP SER VAL LYS GLY SEQRES 6 A 129 ARG PHE THR ILE SER GLN ASP ASN THR LYS ASN ILE LEU SEQRES 7 A 129 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 A 129 MET TYR TYR CYS ALA ALA VAL PRO ARG ALA GLY ILE GLU SEQRES 9 A 129 SER GLY ALA TYR CYS LYS TRP ASN MET LYS ASP SER GLY SEQRES 10 A 129 SER TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HET ZN B1101 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 ALA B 29 SER B 56 1 28 HELIX 2 AA2 ARG B 62 ALA B 64 5 3 HELIX 3 AA3 ASP B 65 VAL B 80 1 16 HELIX 4 AA4 THR B 81 ARG B 91 1 11 HELIX 5 AA5 PHE B 97 ARG B 133 1 37 HELIX 6 AA6 ARG B 141 LEU B 160 1 20 HELIX 7 AA7 ALA B 161 LEU B 167 1 7 HELIX 8 AA8 SER B 193 PHE B 210 1 18 HELIX 9 AA9 PHE B 210 ALA B 229 1 20 HELIX 10 AB1 ASP B 1019 GLY B 1023 5 5 HELIX 11 AB2 ASP B 1029 ILE B 1033 5 5 HELIX 12 AB3 GLY B 1045 ASP B 1047 5 3 HELIX 13 AB4 ARG B 245 SER B 275 1 31 HELIX 14 AB5 PRO B 280 ASN B 301 1 22 HELIX 15 AB6 LEU B 304 ASP B 313 1 10 HELIX 16 AB7 ASP B 313 GLY B 327 1 15 HELIX 17 AB8 LYS A 86 THR A 90 5 5 SHEET 1 AA1 2 ARG B 168 GLY B 171 0 SHEET 2 AA1 2 GLN B 180 MET B 183 -1 O TYR B 182 N THR B 169 SHEET 1 AA2 3 ILE B1012 TYR B1013 0 SHEET 2 AA2 3 TYR B1004 CYS B1006 -1 N TYR B1004 O TYR B1013 SHEET 3 AA2 3 PHE B1049 GLU B1051 -1 O GLU B1050 N THR B1005 SHEET 1 AA3 4 GLN A 3 SER A 7 0 SHEET 2 AA3 4 SER A 21 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA3 4 ILE A 77 ASN A 83 -1 O LEU A 78 N CYS A 22 SHEET 4 AA3 4 SER A 17 THR A 19 -1 N LEU A 18 O MET A 82 SHEET 1 AA4 4 GLN A 3 SER A 7 0 SHEET 2 AA4 4 SER A 21 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA4 4 ILE A 77 ASN A 83 -1 O LEU A 78 N CYS A 22 SHEET 4 AA4 4 PHE A 67 GLN A 71 -1 N THR A 68 O GLN A 81 SHEET 1 AA5 3 SER A 11 GLN A 13 0 SHEET 2 AA5 3 THR A 123 SER A 128 1 O THR A 126 N VAL A 12 SHEET 3 AA5 3 ALA A 91 TYR A 93 -1 N TYR A 93 O THR A 123 SHEET 1 AA6 4 THR A 57 TYR A 59 0 SHEET 2 AA6 4 ALA A 49 MET A 51 -1 N LEU A 50 O SER A 58 SHEET 3 AA6 4 HIS A 32 TRP A 36 -1 N MET A 34 O MET A 51 SHEET 4 AA6 4 CYS A 95 PRO A 99 -1 O VAL A 98 N CYS A 33 SSBOND 1 CYS B 19 CYS B 281 1555 1555 2.05 SSBOND 2 CYS B 102 CYS B 181 1555 1555 2.03 SSBOND 3 CYS A 22 CYS A 95 1555 1555 2.04 LINK SG CYS B1006 ZN ZN B1101 1555 1555 2.09 LINK SG CYS B1009 ZN ZN B1101 1555 1555 2.30 LINK SG CYS B1039 ZN ZN B1101 1555 1555 2.53 LINK SG CYS B1042 ZN ZN B1101 1555 1555 2.47 CISPEP 1 ALA A 40 PRO A 41 0 -25.98 SITE 1 AC1 4 CYS B1006 CYS B1009 CYS B1039 CYS B1042 CRYST1 44.780 48.390 350.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002856 0.00000