HEADER VIRAL PROTEIN 15-AUG-19 6KPQ TITLE CRYSTAL STRUCTURE OF ZIKA NS2B-NS3 PROTEASE WITH COMPOUND 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS2B COFACTOR; COMPND 5 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS3 PROTEASE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 9 ORGANISM_COMMON: ZIKV; SOURCE 10 ORGANISM_TAXID: 64320; SOURCE 11 STRAIN: MR 766; SOURCE 12 GENE: GP1, A2G93_63394GPGP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, PROTEASE INHIBITOR COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.QUEK REVDAT 3 22-NOV-23 6KPQ 1 REMARK REVDAT 2 19-AUG-20 6KPQ 1 JRNL REVDAT 1 17-JUN-20 6KPQ 0 JRNL AUTH N.J.BRAUN,J.P.QUEK,S.HUBER,J.KOURETOVA,D.ROGGE, JRNL AUTH 2 H.LANG-HENKEL,E.Z.K.CHEONG,B.L.A.CHEW,A.HEINE,D.LUO, JRNL AUTH 3 T.STEINMETZER JRNL TITL STRUCTURE-BASED MACROCYCLIZATION OF SUBSTRATE ANALOGUE JRNL TITL 2 NS2B-NS3 PROTEASE INHIBITORS OF ZIKA, WEST NILE AND DENGUE JRNL TITL 3 VIRUSES. JRNL REF CHEMMEDCHEM V. 15 1439 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 32501637 JRNL DOI 10.1002/CMDC.202000237 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 6563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.7100 - 2.6203 0.00 627 0 0.3090 0.3130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1750 9.4284 -18.6392 REMARK 3 T TENSOR REMARK 3 T11: 0.6114 T22: 0.5309 REMARK 3 T33: 0.5645 T12: 0.5704 REMARK 3 T13: 0.1478 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 0.1080 L22: 0.0257 REMARK 3 L33: 0.0507 L12: -0.0535 REMARK 3 L13: -0.0732 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.1968 S12: -0.0064 S13: 0.1283 REMARK 3 S21: -0.0428 S22: 0.1332 S23: 0.1568 REMARK 3 S31: -0.0368 S32: -0.0464 S33: 0.2372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2903 -5.8268 -19.0264 REMARK 3 T TENSOR REMARK 3 T11: 0.6286 T22: 0.9354 REMARK 3 T33: 0.4704 T12: 0.3365 REMARK 3 T13: 0.0658 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.0830 L22: 0.1020 REMARK 3 L33: 0.0490 L12: 0.0496 REMARK 3 L13: -0.0153 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0133 S13: -0.0698 REMARK 3 S21: -0.1625 S22: -0.1132 S23: -0.0573 REMARK 3 S31: -0.1297 S32: 0.0452 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9584 8.6019 -17.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.4478 T22: 0.5345 REMARK 3 T33: 0.5500 T12: 0.4297 REMARK 3 T13: 0.1357 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 0.0583 L22: 0.0338 REMARK 3 L33: 0.0516 L12: 0.0231 REMARK 3 L13: -0.0492 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0039 S13: 0.1004 REMARK 3 S21: -0.0266 S22: -0.0796 S23: 0.0929 REMARK 3 S31: -0.0605 S32: 0.0701 S33: -0.0142 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3365 13.0561 -15.5374 REMARK 3 T TENSOR REMARK 3 T11: 0.4975 T22: 0.4830 REMARK 3 T33: 0.5266 T12: 0.2649 REMARK 3 T13: 0.1180 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.0954 L22: 0.0603 REMARK 3 L33: 0.0519 L12: 0.0333 REMARK 3 L13: 0.0710 L23: 0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0361 S13: 0.3113 REMARK 3 S21: -0.0731 S22: -0.1344 S23: -0.0593 REMARK 3 S31: -0.1142 S32: 0.0828 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0087 3.2041 -10.1914 REMARK 3 T TENSOR REMARK 3 T11: 0.4925 T22: 0.5529 REMARK 3 T33: 0.4929 T12: 0.1878 REMARK 3 T13: 0.1244 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0196 L22: 0.0255 REMARK 3 L33: 0.0123 L12: -0.0221 REMARK 3 L13: -0.0079 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.0259 S13: -0.0588 REMARK 3 S21: -0.0164 S22: -0.1711 S23: 0.0010 REMARK 3 S31: 0.0392 S32: 0.0296 S33: -0.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5423 12.1855 -7.2321 REMARK 3 T TENSOR REMARK 3 T11: 0.8062 T22: 0.4577 REMARK 3 T33: 0.7723 T12: 0.1469 REMARK 3 T13: 0.3256 T23: -0.0969 REMARK 3 L TENSOR REMARK 3 L11: 0.0535 L22: 0.0187 REMARK 3 L33: 0.0142 L12: -0.0077 REMARK 3 L13: 0.0058 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: 0.0047 S13: 0.1468 REMARK 3 S21: -0.0234 S22: 0.0085 S23: 0.1616 REMARK 3 S31: -0.0795 S32: 0.0070 S33: 0.0020 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4111 -0.1198 -4.5305 REMARK 3 T TENSOR REMARK 3 T11: 0.5774 T22: 0.4702 REMARK 3 T33: 0.4607 T12: 0.0999 REMARK 3 T13: 0.0876 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: 0.0056 REMARK 3 L33: 0.0060 L12: 0.0058 REMARK 3 L13: 0.0002 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0054 S13: -0.0233 REMARK 3 S21: 0.0681 S22: -0.2410 S23: 0.0880 REMARK 3 S31: 0.0105 S32: 0.0511 S33: -0.0004 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1313 -9.4534 -16.4354 REMARK 3 T TENSOR REMARK 3 T11: 0.5378 T22: 0.5145 REMARK 3 T33: 0.3939 T12: 0.2631 REMARK 3 T13: 0.0307 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.0075 REMARK 3 L33: 0.0068 L12: -0.0072 REMARK 3 L13: 0.0101 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: 0.1133 S13: -0.1158 REMARK 3 S21: -0.0224 S22: -0.0174 S23: -0.0124 REMARK 3 S31: 0.1612 S32: 0.1127 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2035 5.0378 -26.2333 REMARK 3 T TENSOR REMARK 3 T11: 0.5108 T22: 0.5863 REMARK 3 T33: 0.4317 T12: 0.6396 REMARK 3 T13: 0.0549 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.0084 L22: 0.0039 REMARK 3 L33: 0.0461 L12: 0.0006 REMARK 3 L13: -0.0197 L23: 0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0012 S13: 0.1643 REMARK 3 S21: -0.0327 S22: -0.0424 S23: 0.0550 REMARK 3 S31: 0.0291 S32: -0.0044 S33: -0.0052 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2803 -9.4746 -19.1362 REMARK 3 T TENSOR REMARK 3 T11: 0.5624 T22: 0.6204 REMARK 3 T33: 0.5303 T12: 0.4955 REMARK 3 T13: 0.0530 T23: 0.2200 REMARK 3 L TENSOR REMARK 3 L11: 0.0158 L22: 0.0522 REMARK 3 L33: 0.0804 L12: 0.0053 REMARK 3 L13: -0.0173 L23: 0.0511 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: -0.0369 S13: -0.2857 REMARK 3 S21: -0.1246 S22: -0.0826 S23: -0.2284 REMARK 3 S31: -0.1068 S32: 0.0109 S33: -0.0146 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5386 -1.3729 -22.3323 REMARK 3 T TENSOR REMARK 3 T11: 0.5039 T22: 0.4513 REMARK 3 T33: 0.4569 T12: 0.6117 REMARK 3 T13: 0.1311 T23: 0.1343 REMARK 3 L TENSOR REMARK 3 L11: 0.0529 L22: 0.0651 REMARK 3 L33: 0.0659 L12: -0.0631 REMARK 3 L13: 0.0359 L23: -0.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0299 S13: -0.0615 REMARK 3 S21: -0.0487 S22: -0.0809 S23: 0.2325 REMARK 3 S31: -0.0124 S32: -0.0188 S33: -0.0831 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9389 -2.9013 -17.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.4330 T22: 0.3921 REMARK 3 T33: 0.3668 T12: 0.6455 REMARK 3 T13: 0.1261 T23: 0.1084 REMARK 3 L TENSOR REMARK 3 L11: 0.0220 L22: 0.0739 REMARK 3 L33: 0.0625 L12: -0.0453 REMARK 3 L13: -0.0186 L23: 0.0500 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: 0.0712 S13: 0.0204 REMARK 3 S21: 0.0497 S22: 0.0363 S23: -0.0895 REMARK 3 S31: -0.0756 S32: 0.1117 S33: 0.3045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6571 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 1.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 30% PEG 2000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.09000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 160.63500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.54500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.09000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.54500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 160.63500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 170 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 146 O HOH B 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 105 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 -167.46 -76.06 REMARK 500 LEU B 30 -156.88 -128.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DT0 B 201 DBREF 6KPQ A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF1 6KPQ B 1 177 UNP A0A142IX72_ZIKV DBREF2 6KPQ B A0A142IX72 1497 1673 SEQADV 6KPQ MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 6KPQ THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 6KPQ GLY B 0 UNP A0A142IX7 EXPRESSION TAG SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET DT0 B 201 47 HETNAM DT0 1-[(10~{R},17~{S},20~{S})-17,20-BIS(4-AZANYLBUTYL)-4,9, HETNAM 2 DT0 16,19,22-PENTAKIS(OXIDANYLIDENE)-3,8,15,18,21- HETNAM 3 DT0 PENTAZABICYCLO[22.3.1]OCTACOSA-1(27),24(28),25-TRIEN- HETNAM 4 DT0 10-YL]GUANIDINE FORMUL 3 DT0 C32 H54 N10 O5 FORMUL 4 HOH *4(H2 O) HELIX 1 AA1 MET B 49 LYS B 54 1 6 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 7 LEU B 58 ARG B 59 0 SHEET 2 AA1 7 MET A 51 GLY A 57 1 N ILE A 53 O ARG B 59 SHEET 3 AA1 7 GLY B 21 THR B 27 -1 O ARG B 24 N GLU A 54 SHEET 4 AA1 7 THR B 34 GLN B 42 -1 O GLY B 39 N TYR B 23 SHEET 5 AA1 7 VAL B 45 THR B 48 -1 O HIS B 47 N VAL B 40 SHEET 6 AA1 7 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 7 AA1 7 PRO B 67 ASP B 71 -1 N TYR B 68 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N VAL B 95 O THR B 111 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O ILE B 147 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 LYS B 117 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 ASP B 122 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SSBOND 1 CYS B 143 CYS B 143 1555 8444 2.02 SITE 1 AC1 16 GLU A 66 GLY A 82 ASP A 83 PHE A 84 SITE 2 AC1 16 HIS B 51 ASP B 129 TYR B 130 SER B 135 SITE 3 AC1 16 TYR B 150 GLY B 151 ASN B 152 GLY B 153 SITE 4 AC1 16 GLY B 159 SER B 160 TYR B 161 HOH B 303 CRYST1 42.586 42.586 214.180 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004669 0.00000