HEADER OXIDOREDUCTASE 16-AUG-19 6KPT TITLE CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FADE5 FROM MYCOBACTERIA TITLE 2 SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.8.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: FADE5, ERS451418_00380; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TUBERCULOSIS, BETA-OXIDATION, ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,X.B.CHEN REVDAT 4 27-MAR-24 6KPT 1 REMARK REVDAT 3 29-JUL-20 6KPT 1 JRNL REVDAT 2 15-JUL-20 6KPT 1 JRNL REVDAT 1 01-JUL-20 6KPT 0 JRNL AUTH X.CHEN,J.CHEN,B.YAN,W.ZHANG,L.W.GUDDAT,X.LIU,Z.RAO JRNL TITL STRUCTURAL BASIS FOR THE BROAD SUBSTRATE SPECIFICITY OF TWO JRNL TITL 2 ACYL-COA DEHYDROGENASES FADE5 FROM MYCOBACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 16324 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32601219 JRNL DOI 10.1073/PNAS.2002835117 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 105675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 5240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7930 - 6.0922 0.99 3657 178 0.1931 0.1904 REMARK 3 2 6.0922 - 4.8382 1.00 3521 181 0.1584 0.1862 REMARK 3 3 4.8382 - 4.2274 1.00 3422 220 0.1200 0.1380 REMARK 3 4 4.2274 - 3.8413 1.00 3465 174 0.1266 0.1665 REMARK 3 5 3.8413 - 3.5661 1.00 3433 178 0.1454 0.1646 REMARK 3 6 3.5661 - 3.3560 1.00 3418 193 0.1530 0.2191 REMARK 3 7 3.3560 - 3.1880 1.00 3421 176 0.1545 0.2021 REMARK 3 8 3.1880 - 3.0493 1.00 3411 177 0.1597 0.2108 REMARK 3 9 3.0493 - 2.9319 1.00 3417 160 0.1586 0.1984 REMARK 3 10 2.9319 - 2.8308 1.00 3370 211 0.1563 0.1941 REMARK 3 11 2.8308 - 2.7423 1.00 3390 162 0.1451 0.1854 REMARK 3 12 2.7423 - 2.6639 1.00 3385 189 0.1482 0.1945 REMARK 3 13 2.6639 - 2.5938 1.00 3408 189 0.1438 0.2124 REMARK 3 14 2.5938 - 2.5305 1.00 3359 182 0.1473 0.2159 REMARK 3 15 2.5305 - 2.4730 1.00 3367 173 0.1456 0.1872 REMARK 3 16 2.4730 - 2.4204 1.00 3398 175 0.1473 0.1922 REMARK 3 17 2.4204 - 2.3720 1.00 3387 158 0.1448 0.2018 REMARK 3 18 2.3720 - 2.3272 1.00 3356 170 0.1484 0.2119 REMARK 3 19 2.3272 - 2.2857 1.00 3449 147 0.1484 0.1889 REMARK 3 20 2.2857 - 2.2469 1.00 3335 192 0.1476 0.1818 REMARK 3 21 2.2469 - 2.2107 0.99 3332 168 0.1467 0.2036 REMARK 3 22 2.2107 - 2.1767 0.99 3334 156 0.1489 0.1929 REMARK 3 23 2.1767 - 2.1447 0.99 3386 172 0.1523 0.2054 REMARK 3 24 2.1447 - 2.1145 1.00 3304 185 0.1563 0.1974 REMARK 3 25 2.1145 - 2.0859 0.99 3374 164 0.1533 0.1951 REMARK 3 26 2.0859 - 2.0588 1.00 3381 174 0.1598 0.1951 REMARK 3 27 2.0588 - 2.0331 1.00 3348 171 0.1586 0.2045 REMARK 3 28 2.0331 - 2.0086 1.00 3316 182 0.1660 0.1935 REMARK 3 29 2.0086 - 1.9852 0.99 3366 162 0.1744 0.2411 REMARK 3 30 1.9852 - 1.9630 0.58 1925 121 0.1979 0.2392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 9651 REMARK 3 ANGLE : 1.398 13084 REMARK 3 CHIRALITY : 0.069 1446 REMARK 3 PLANARITY : 0.010 1694 REMARK 3 DIHEDRAL : 7.323 7805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9748 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)2 SO4, 2%(V/V) PEG400, 0.1 M REMARK 280 ACETATE PH 5.5, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.91250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.64750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.91250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.64750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1211 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1315 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 485 REMARK 465 GLY A 486 REMARK 465 GLU B 484 REMARK 465 ASN B 485 REMARK 465 GLY B 486 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 880 O HOH A 1168 1.77 REMARK 500 O HOH A 1158 O HOH A 1190 1.99 REMARK 500 CE MET A 332 O ILE B 525 2.07 REMARK 500 O HOH B 1272 O HOH B 1275 2.08 REMARK 500 O HOH B 1115 O HOH B 1292 2.10 REMARK 500 O HOH A 1110 O HOH A 1284 2.11 REMARK 500 O HOH A 1242 O HOH A 1259 2.12 REMARK 500 O HOH B 1090 O HOH B 1201 2.13 REMARK 500 O HOH A 1189 O HOH A 1205 2.13 REMARK 500 O HOH B 1062 O HOH B 1333 2.17 REMARK 500 O HOH A 938 O HOH A 1064 2.17 REMARK 500 O HOH A 1143 O HOH B 1187 2.17 REMARK 500 O HOH A 942 O HOH A 1281 2.19 REMARK 500 O HOH A 1028 O HOH A 1136 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 585 CG MET A 585 SD -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 293 CG - SD - CE ANGL. DEV. = 15.8 DEGREES REMARK 500 MET A 302 CA - CB - CG ANGL. DEV. = 12.6 DEGREES REMARK 500 MET A 302 CG - SD - CE ANGL. DEV. = 13.1 DEGREES REMARK 500 MET A 335 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 MET A 335 CG - SD - CE ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 366 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 438 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 516 CG - SD - CE ANGL. DEV. = 19.2 DEGREES REMARK 500 MET B 41 CG - SD - CE ANGL. DEV. = 25.2 DEGREES REMARK 500 MET B 134 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 MET B 293 CG - SD - CE ANGL. DEV. = 14.3 DEGREES REMARK 500 MET B 303 CG - SD - CE ANGL. DEV. = 11.3 DEGREES REMARK 500 MET B 335 CG - SD - CE ANGL. DEV. = 18.9 DEGREES REMARK 500 LEU B 497 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -125.53 60.06 REMARK 500 ASN A 122 79.36 -169.78 REMARK 500 SER A 202 39.67 -154.09 REMARK 500 ASP A 203 -139.28 58.08 REMARK 500 GLU A 285 41.41 39.58 REMARK 500 ASN A 288 46.07 -156.81 REMARK 500 GLN A 328 118.91 -164.13 REMARK 500 ASP B 28 -128.88 65.85 REMARK 500 ASP B 32 30.95 -98.52 REMARK 500 ASN B 122 75.67 -173.95 REMARK 500 SER B 202 35.62 -149.11 REMARK 500 ASP B 203 -139.24 61.24 REMARK 500 ASN B 288 45.62 -163.31 REMARK 500 GLN B 328 116.82 -161.18 REMARK 500 ILE B 462 -63.75 -109.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 701 DBREF1 6KPT A 1 611 UNP A0A0D6G5A8_MYCSM DBREF2 6KPT A A0A0D6G5A8 1 611 DBREF1 6KPT B 1 611 UNP A0A0D6G5A8_MYCSM DBREF2 6KPT B A0A0D6G5A8 1 611 SEQRES 1 A 611 MET SER HIS TYR LYS SER ASN VAL ARG ASP GLN VAL PHE SEQRES 2 A 611 ASN LEU PHE GLU VAL PHE GLY VAL ASP LYS VAL LEU GLY SEQRES 3 A 611 ALA ASP LYS PHE SER ASP LEU ASP ALA ASP THR ALA ARG SEQRES 4 A 611 GLU MET LEU THR GLU ILE ALA ARG LEU ALA GLU GLY PRO SEQRES 5 A 611 ILE ALA GLU SER PHE VAL GLU GLY ASP ARG ASN PRO PRO SEQRES 6 A 611 VAL PHE ASP PRO GLU THR HIS THR VAL THR LEU PRO GLU SEQRES 7 A 611 GLY PHE LYS LYS SER MET ARG ALA LEU PHE ASP GLY GLY SEQRES 8 A 611 TRP ASP LYS VAL GLY LEU ALA GLU HIS LEU GLY GLY ILE SEQRES 9 A 611 PRO MET PRO ARG ALA LEU GLN TRP ALA LEU ILE GLU HIS SEQRES 10 A 611 ILE LEU GLY ALA ASN PRO ALA ALA TYR MET TYR ALA MET SEQRES 11 A 611 GLY PRO GLY MET SER GLU ILE PHE TYR ASN ASN GLY THR SEQRES 12 A 611 ASP GLU GLN LYS LYS TRP ALA THR ILE ALA ALA GLU ARG SEQRES 13 A 611 GLY TRP GLY ALA THR MET VAL LEU THR GLU PRO ASP ALA SEQRES 14 A 611 GLY SER ASP VAL GLY ALA GLY ARG THR LYS ALA VAL GLN SEQRES 15 A 611 GLN PRO ASP GLY THR TRP HIS ILE GLU GLY VAL LYS ARG SEQRES 16 A 611 PHE ILE THR SER ALA ASP SER ASP ASP LEU PHE GLU ASN SEQRES 17 A 611 ILE MET HIS LEU VAL LEU ALA ARG PRO GLU GLY ALA GLY SEQRES 18 A 611 PRO GLY THR LYS GLY LEU SER LEU PHE PHE VAL PRO LYS SEQRES 19 A 611 PHE HIS PHE ASP HIS GLU THR GLY GLU ILE GLY GLU ARG SEQRES 20 A 611 ASN GLY VAL PHE VAL THR ASN VAL GLU HIS LYS MET GLY SEQRES 21 A 611 LEU LYS VAL SER ALA THR CYS GLU LEU SER LEU GLY GLN SEQRES 22 A 611 HIS GLY ILE PRO ALA VAL GLY TRP LEU VAL GLY GLU VAL SEQRES 23 A 611 HIS ASN GLY ILE ALA GLN MET PHE ASP VAL ILE GLU GLN SEQRES 24 A 611 ALA ARG MET MET VAL GLY THR LYS ALA ILE ALA THR LEU SEQRES 25 A 611 SER THR GLY TYR LEU ASN ALA LEU GLU TYR ALA LYS GLU SEQRES 26 A 611 ARG VAL GLN GLY ALA ASP MET THR GLN MET THR ASP LYS SEQRES 27 A 611 THR ALA PRO ARG VAL THR ILE THR HIS HIS PRO ASP VAL SEQRES 28 A 611 ARG ARG SER LEU MET THR GLN LYS ALA TYR ALA GLU GLY SEQRES 29 A 611 LEU ARG ALA ILE TYR LEU TYR THR ALA THR PHE GLN ASP SEQRES 30 A 611 ALA GLU VAL ALA GLN ALA VAL HIS GLY VAL ASP GLY ASP SEQRES 31 A 611 LEU ALA ALA ARG VAL ASN ASP LEU LEU LEU PRO ILE VAL SEQRES 32 A 611 LYS GLY PHE GLY SER GLU THR ALA TYR ALA LYS LEU THR SEQRES 33 A 611 GLU SER LEU GLN THR LEU GLY GLY SER GLY PHE LEU GLN SEQRES 34 A 611 ASP TYR PRO ILE GLU GLN TYR ILE ARG ASP SER LYS ILE SEQRES 35 A 611 ASP SER LEU TYR GLU GLY THR THR ALA ILE GLN ALA GLN SEQRES 36 A 611 ASP PHE PHE PHE ARG LYS ILE ILE ARG ASP LYS GLY GLN SEQRES 37 A 611 ALA LEU ALA TYR VAL ALA GLY GLU ILE GLU GLN PHE ILE SEQRES 38 A 611 LYS ASN GLU ASN GLY ASN GLY ARG LEU LYS THR GLU ARG SEQRES 39 A 611 GLU LEU LEU ALA THR ALA LEU ALA ASP VAL GLN GLY MET SEQRES 40 A 611 ALA ALA SER LEU THR GLY TYR LEU MET ALA ALA GLN GLU SEQRES 41 A 611 ASP ALA ALA SER ILE TYR LYS VAL GLY LEU GLY SER VAL SEQRES 42 A 611 ARG PHE LEU MET ALA VAL GLY ASP LEU LEU SER GLY TRP SEQRES 43 A 611 LEU LEU ALA ARG GLN ALA ALA VAL ALA ILE GLU LYS LEU SEQRES 44 A 611 ASP ALA GLY ALA THR GLY ALA ASP LYS SER PHE TYR GLU SEQRES 45 A 611 GLY LYS ILE ALA ALA ALA SER PHE PHE ALA LYS ASN MET SEQRES 46 A 611 LEU PRO LEU LEU THR SER THR ARG GLN ILE ILE GLU ASN SEQRES 47 A 611 LEU ASP ASN ASP VAL MET GLU LEU ASP GLU ALA ALA PHE SEQRES 1 B 611 MET SER HIS TYR LYS SER ASN VAL ARG ASP GLN VAL PHE SEQRES 2 B 611 ASN LEU PHE GLU VAL PHE GLY VAL ASP LYS VAL LEU GLY SEQRES 3 B 611 ALA ASP LYS PHE SER ASP LEU ASP ALA ASP THR ALA ARG SEQRES 4 B 611 GLU MET LEU THR GLU ILE ALA ARG LEU ALA GLU GLY PRO SEQRES 5 B 611 ILE ALA GLU SER PHE VAL GLU GLY ASP ARG ASN PRO PRO SEQRES 6 B 611 VAL PHE ASP PRO GLU THR HIS THR VAL THR LEU PRO GLU SEQRES 7 B 611 GLY PHE LYS LYS SER MET ARG ALA LEU PHE ASP GLY GLY SEQRES 8 B 611 TRP ASP LYS VAL GLY LEU ALA GLU HIS LEU GLY GLY ILE SEQRES 9 B 611 PRO MET PRO ARG ALA LEU GLN TRP ALA LEU ILE GLU HIS SEQRES 10 B 611 ILE LEU GLY ALA ASN PRO ALA ALA TYR MET TYR ALA MET SEQRES 11 B 611 GLY PRO GLY MET SER GLU ILE PHE TYR ASN ASN GLY THR SEQRES 12 B 611 ASP GLU GLN LYS LYS TRP ALA THR ILE ALA ALA GLU ARG SEQRES 13 B 611 GLY TRP GLY ALA THR MET VAL LEU THR GLU PRO ASP ALA SEQRES 14 B 611 GLY SER ASP VAL GLY ALA GLY ARG THR LYS ALA VAL GLN SEQRES 15 B 611 GLN PRO ASP GLY THR TRP HIS ILE GLU GLY VAL LYS ARG SEQRES 16 B 611 PHE ILE THR SER ALA ASP SER ASP ASP LEU PHE GLU ASN SEQRES 17 B 611 ILE MET HIS LEU VAL LEU ALA ARG PRO GLU GLY ALA GLY SEQRES 18 B 611 PRO GLY THR LYS GLY LEU SER LEU PHE PHE VAL PRO LYS SEQRES 19 B 611 PHE HIS PHE ASP HIS GLU THR GLY GLU ILE GLY GLU ARG SEQRES 20 B 611 ASN GLY VAL PHE VAL THR ASN VAL GLU HIS LYS MET GLY SEQRES 21 B 611 LEU LYS VAL SER ALA THR CYS GLU LEU SER LEU GLY GLN SEQRES 22 B 611 HIS GLY ILE PRO ALA VAL GLY TRP LEU VAL GLY GLU VAL SEQRES 23 B 611 HIS ASN GLY ILE ALA GLN MET PHE ASP VAL ILE GLU GLN SEQRES 24 B 611 ALA ARG MET MET VAL GLY THR LYS ALA ILE ALA THR LEU SEQRES 25 B 611 SER THR GLY TYR LEU ASN ALA LEU GLU TYR ALA LYS GLU SEQRES 26 B 611 ARG VAL GLN GLY ALA ASP MET THR GLN MET THR ASP LYS SEQRES 27 B 611 THR ALA PRO ARG VAL THR ILE THR HIS HIS PRO ASP VAL SEQRES 28 B 611 ARG ARG SER LEU MET THR GLN LYS ALA TYR ALA GLU GLY SEQRES 29 B 611 LEU ARG ALA ILE TYR LEU TYR THR ALA THR PHE GLN ASP SEQRES 30 B 611 ALA GLU VAL ALA GLN ALA VAL HIS GLY VAL ASP GLY ASP SEQRES 31 B 611 LEU ALA ALA ARG VAL ASN ASP LEU LEU LEU PRO ILE VAL SEQRES 32 B 611 LYS GLY PHE GLY SER GLU THR ALA TYR ALA LYS LEU THR SEQRES 33 B 611 GLU SER LEU GLN THR LEU GLY GLY SER GLY PHE LEU GLN SEQRES 34 B 611 ASP TYR PRO ILE GLU GLN TYR ILE ARG ASP SER LYS ILE SEQRES 35 B 611 ASP SER LEU TYR GLU GLY THR THR ALA ILE GLN ALA GLN SEQRES 36 B 611 ASP PHE PHE PHE ARG LYS ILE ILE ARG ASP LYS GLY GLN SEQRES 37 B 611 ALA LEU ALA TYR VAL ALA GLY GLU ILE GLU GLN PHE ILE SEQRES 38 B 611 LYS ASN GLU ASN GLY ASN GLY ARG LEU LYS THR GLU ARG SEQRES 39 B 611 GLU LEU LEU ALA THR ALA LEU ALA ASP VAL GLN GLY MET SEQRES 40 B 611 ALA ALA SER LEU THR GLY TYR LEU MET ALA ALA GLN GLU SEQRES 41 B 611 ASP ALA ALA SER ILE TYR LYS VAL GLY LEU GLY SER VAL SEQRES 42 B 611 ARG PHE LEU MET ALA VAL GLY ASP LEU LEU SER GLY TRP SEQRES 43 B 611 LEU LEU ALA ARG GLN ALA ALA VAL ALA ILE GLU LYS LEU SEQRES 44 B 611 ASP ALA GLY ALA THR GLY ALA ASP LYS SER PHE TYR GLU SEQRES 45 B 611 GLY LYS ILE ALA ALA ALA SER PHE PHE ALA LYS ASN MET SEQRES 46 B 611 LEU PRO LEU LEU THR SER THR ARG GLN ILE ILE GLU ASN SEQRES 47 B 611 LEU ASP ASN ASP VAL MET GLU LEU ASP GLU ALA ALA PHE HET FAD A 701 84 HET FAD B 701 83 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *1051(H2 O) HELIX 1 AA1 ASN A 7 GLU A 17 1 11 HELIX 2 AA2 GLY A 20 LEU A 25 5 6 HELIX 3 AA3 ALA A 27 SER A 31 5 5 HELIX 4 AA4 ASP A 34 GLY A 51 1 18 HELIX 5 AA5 ILE A 53 GLU A 55 5 3 HELIX 6 AA6 SER A 56 ASN A 63 1 8 HELIX 7 AA7 PRO A 77 GLY A 90 1 14 HELIX 8 AA8 GLY A 91 VAL A 95 5 5 HELIX 9 AA9 ALA A 98 GLY A 102 5 5 HELIX 10 AB1 PRO A 107 ASN A 122 1 16 HELIX 11 AB2 ASN A 122 ALA A 129 1 8 HELIX 12 AB3 MET A 130 GLY A 142 1 13 HELIX 13 AB4 THR A 143 GLY A 157 1 15 HELIX 14 AB5 ASP A 172 GLY A 176 5 5 HELIX 15 AB6 GLY A 223 LEU A 227 5 5 HELIX 16 AB7 GLY A 284 VAL A 286 5 3 HELIX 17 AB8 ASN A 288 ARG A 326 1 39 HELIX 18 AB9 MET A 332 MET A 335 5 4 HELIX 19 AC1 HIS A 348 THR A 374 1 27 HELIX 20 AC2 ASP A 377 GLY A 386 1 10 HELIX 21 AC3 ASP A 388 LEU A 422 1 35 HELIX 22 AC4 GLY A 423 LEU A 428 5 6 HELIX 23 AC5 PRO A 432 LYS A 441 1 10 HELIX 24 AC6 ILE A 442 LEU A 445 5 4 HELIX 25 AC7 THR A 449 ARG A 460 1 12 HELIX 26 AC8 GLY A 467 ASN A 483 1 17 HELIX 27 AC9 ASN A 487 ARG A 489 5 3 HELIX 28 AD1 LEU A 490 ALA A 518 1 29 HELIX 29 AD2 GLN A 519 GLU A 520 5 2 HELIX 30 AD3 ASP A 521 ALA A 523 5 3 HELIX 31 AD4 SER A 524 ALA A 561 1 38 HELIX 32 AD5 THR A 564 MET A 585 1 22 HELIX 33 AD6 PRO A 587 ASN A 598 1 12 HELIX 34 AD7 ASN A 601 LEU A 606 1 6 HELIX 35 AD8 ASP A 607 PHE A 611 5 5 HELIX 36 AD9 ASN B 7 GLU B 17 1 11 HELIX 37 AE1 GLY B 20 LEU B 25 5 6 HELIX 38 AE2 ALA B 27 SER B 31 5 5 HELIX 39 AE3 ASP B 34 GLY B 51 1 18 HELIX 40 AE4 ILE B 53 GLU B 55 5 3 HELIX 41 AE5 SER B 56 ASN B 63 1 8 HELIX 42 AE6 PRO B 77 GLY B 90 1 14 HELIX 43 AE7 GLY B 91 VAL B 95 5 5 HELIX 44 AE8 ALA B 98 GLY B 102 5 5 HELIX 45 AE9 PRO B 107 ASN B 122 1 16 HELIX 46 AF1 ASN B 122 ALA B 129 1 8 HELIX 47 AF2 MET B 130 GLY B 142 1 13 HELIX 48 AF3 THR B 143 GLY B 157 1 15 HELIX 49 AF4 ASP B 172 GLY B 176 5 5 HELIX 50 AF5 GLY B 223 LEU B 227 5 5 HELIX 51 AF6 GLY B 284 VAL B 286 5 3 HELIX 52 AF7 ASN B 288 ARG B 326 1 39 HELIX 53 AF8 MET B 332 MET B 335 5 4 HELIX 54 AF9 HIS B 348 THR B 374 1 27 HELIX 55 AG1 ASP B 377 GLY B 386 1 10 HELIX 56 AG2 ASP B 388 LEU B 422 1 35 HELIX 57 AG3 GLY B 423 LEU B 428 5 6 HELIX 58 AG4 PRO B 432 ILE B 442 1 11 HELIX 59 AG5 ASP B 443 LEU B 445 5 3 HELIX 60 AG6 THR B 449 ARG B 460 1 12 HELIX 61 AG7 GLY B 467 ASN B 483 1 17 HELIX 62 AG8 ASN B 487 ARG B 489 5 3 HELIX 63 AG9 LEU B 490 ALA B 518 1 29 HELIX 64 AH1 GLN B 519 GLU B 520 5 2 HELIX 65 AH2 ASP B 521 ALA B 523 5 3 HELIX 66 AH3 SER B 524 GLY B 562 1 39 HELIX 67 AH4 THR B 564 MET B 585 1 22 HELIX 68 AH5 PRO B 587 ASN B 598 1 12 HELIX 69 AH6 ASN B 601 LEU B 606 1 6 HELIX 70 AH7 ASP B 607 PHE B 611 5 5 SHEET 1 AA1 2 VAL A 66 PHE A 67 0 SHEET 2 AA1 2 VAL A 74 THR A 75 -1 O THR A 75 N VAL A 66 SHEET 1 AA2 6 GLY A 159 VAL A 163 0 SHEET 2 AA2 6 ILE A 209 PRO A 217 1 O LEU A 212 N VAL A 163 SHEET 3 AA2 6 LYS A 179 GLN A 182 1 N ALA A 180 O ARG A 216 SHEET 4 AA2 6 TRP A 188 THR A 198 -1 O GLU A 191 N LYS A 179 SHEET 5 AA2 6 THR A 266 LEU A 271 -1 O LEU A 271 N GLY A 192 SHEET 6 AA2 6 VAL A 250 VAL A 255 -1 N PHE A 251 O SER A 270 SHEET 1 AA3 7 GLY A 159 VAL A 163 0 SHEET 2 AA3 7 ILE A 209 PRO A 217 1 O LEU A 212 N VAL A 163 SHEET 3 AA3 7 SER A 228 PRO A 233 -1 O SER A 228 N ALA A 215 SHEET 4 AA3 7 ALA A 278 LEU A 282 -1 O TRP A 281 N PHE A 231 SHEET 5 AA3 7 TRP A 188 THR A 198 -1 N ILE A 190 O ALA A 278 SHEET 6 AA3 7 THR A 266 LEU A 271 -1 O LEU A 271 N GLY A 192 SHEET 7 AA3 7 VAL A 250 VAL A 255 -1 N PHE A 251 O SER A 270 SHEET 1 AA4 2 PHE A 235 PHE A 237 0 SHEET 2 AA4 2 ILE A 244 ARG A 247 -1 O GLY A 245 N HIS A 236 SHEET 1 AA5 2 VAL A 327 ALA A 330 0 SHEET 2 AA5 2 ARG A 342 THR A 344 -1 O VAL A 343 N GLN A 328 SHEET 1 AA6 2 VAL B 66 ASP B 68 0 SHEET 2 AA6 2 THR B 73 THR B 75 -1 O THR B 73 N ASP B 68 SHEET 1 AA7 6 GLY B 159 VAL B 163 0 SHEET 2 AA7 6 ILE B 209 PRO B 217 1 O LEU B 212 N VAL B 163 SHEET 3 AA7 6 LYS B 179 GLN B 182 1 N ALA B 180 O ARG B 216 SHEET 4 AA7 6 TRP B 188 THR B 198 -1 O GLU B 191 N LYS B 179 SHEET 5 AA7 6 THR B 266 LEU B 271 -1 O LEU B 271 N GLY B 192 SHEET 6 AA7 6 VAL B 250 VAL B 255 -1 N PHE B 251 O SER B 270 SHEET 1 AA8 7 GLY B 159 VAL B 163 0 SHEET 2 AA8 7 ILE B 209 PRO B 217 1 O LEU B 212 N VAL B 163 SHEET 3 AA8 7 SER B 228 PRO B 233 -1 O SER B 228 N ALA B 215 SHEET 4 AA8 7 ALA B 278 LEU B 282 -1 O TRP B 281 N PHE B 231 SHEET 5 AA8 7 TRP B 188 THR B 198 -1 N TRP B 188 O GLY B 280 SHEET 6 AA8 7 THR B 266 LEU B 271 -1 O LEU B 271 N GLY B 192 SHEET 7 AA8 7 VAL B 250 VAL B 255 -1 N PHE B 251 O SER B 270 SHEET 1 AA9 2 PHE B 235 PHE B 237 0 SHEET 2 AA9 2 ILE B 244 ARG B 247 -1 O GLU B 246 N HIS B 236 SHEET 1 AB1 2 VAL B 327 ALA B 330 0 SHEET 2 AB1 2 ARG B 342 THR B 344 -1 O VAL B 343 N GLY B 329 SITE 1 AC1 27 MET A 162 LEU A 164 THR A 165 GLY A 170 SITE 2 AC1 27 SER A 171 PHE A 196 THR A 198 ILE A 442 SITE 3 AC1 27 LEU A 445 GLU A 447 THR A 449 GLN A 455 SITE 4 AC1 27 HOH A 886 HOH A 892 HOH A 925 HOH A1008 SITE 5 AC1 27 HOH A1022 HOH A1068 ARG B 326 GLN B 328 SITE 6 AC1 27 ILE B 345 HIS B 348 GLN B 420 THR B 421 SITE 7 AC1 27 GLY B 424 HOH B 834 HOH B 940 SITE 1 AC2 31 ARG A 326 GLN A 328 ILE A 345 HIS A 348 SITE 2 AC2 31 VAL A 351 GLN A 420 THR A 421 GLY A 423 SITE 3 AC2 31 GLY A 424 HOH A 824 HOH A 930 MET B 162 SITE 4 AC2 31 LEU B 164 THR B 165 GLY B 170 SER B 171 SITE 5 AC2 31 PHE B 196 ILE B 197 THR B 198 ILE B 442 SITE 6 AC2 31 LEU B 445 TYR B 446 GLU B 447 THR B 449 SITE 7 AC2 31 GLN B 455 HOH B 896 HOH B 919 HOH B 982 SITE 8 AC2 31 HOH B1056 HOH B1112 HOH B1178 CRYST1 74.202 97.825 205.295 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004871 0.00000