HEADER TRANSFERASE 18-AUG-19 6KQP TITLE NSD1 SET DOMAIN IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 AND H4 COMPND 3 LYSINE-20 SPECIFIC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ANDROGEN RECEPTOR COACTIVATOR 267 KDA PROTEIN,ANDROGEN COMPND 6 RECEPTOR-ASSOCIATED PROTEIN OF 267 KDA,H3-K36-HMTASE,H4-K20-HMTASE, COMPND 7 LYSINE N-METHYLTRANSFERASE 3B,NUCLEAR RECEPTOR-BINDING SET DOMAIN- COMPND 8 CONTAINING PROTEIN 1,NR-BINDING SET DOMAIN-CONTAINING PROTEIN; COMPND 9 EC: 2.1.1.357; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NSD1, ARA267, KMT3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE-METHYLTRANSFERASE, SAM COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.CHO,T.CIERPICKI REVDAT 4 22-NOV-23 6KQP 1 REMARK REVDAT 3 02-DEC-20 6KQP 1 JRNL REVDAT 2 16-SEP-20 6KQP 1 JRNL REVDAT 1 02-SEP-20 6KQP 0 JRNL AUTH H.HUANG,C.A.HOWARD,S.ZARI,H.J.CHO,S.SHUKLA,H.LI,J.NDOJ, JRNL AUTH 2 P.GONZALEZ-ALONSO,C.NIKOLAIDIS,J.ABBOTT,D.S.ROGAWSKI, JRNL AUTH 3 M.A.POTOPNYK,K.KEMPINSKA,H.MIAO,T.PUROHIT,A.HENDERSON, JRNL AUTH 4 A.MAPP,M.L.SULIS,A.FERRANDO,J.GREMBECKA,T.CIERPICKI JRNL TITL COVALENT INHIBITION OF NSD1 HISTONE METHYLTRANSFERASE. JRNL REF NAT.CHEM.BIOL. V. 16 1403 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32868895 JRNL DOI 10.1038/S41589-020-0626-6 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : 1.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.437 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1795 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1615 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2427 ; 1.474 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3763 ; 1.291 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 6.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;26.583 ;21.863 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;17.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.854 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2023 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 381 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6KQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58900 REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3OOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, PH 5.6, 200MM REMARK 280 POTASSIUM SODIUM TARTRATE, 2M AMMONIUM SULFATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.82450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.82450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.29100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.82450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.82450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.29100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.82450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.82450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.29100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.82450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.82450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.29100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1874 CG CD CE NZ REMARK 470 GLU A1978 CG CD OE1 OE2 REMARK 470 GLN A2024 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A1868 153.70 -48.49 REMARK 500 CYS A1905 15.47 59.94 REMARK 500 ASN A1933 51.39 -118.90 REMARK 500 ASP A2004 14.11 -142.38 REMARK 500 ASN A2059 -133.09 48.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1895 SG REMARK 620 2 CYS A1897 SG 102.1 REMARK 620 3 CYS A1905 SG 107.3 102.9 REMARK 620 4 CYS A1911 SG 110.1 116.1 117.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1905 SG REMARK 620 2 CYS A1920 SG 100.6 REMARK 620 3 CYS A1925 SG 99.5 92.4 REMARK 620 4 CYS A1931 SG 125.5 117.3 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A2023 SG REMARK 620 2 CYS A2070 SG 115.7 REMARK 620 3 CYS A2072 SG 117.4 103.2 REMARK 620 4 CYS A2077 SG 109.5 104.5 105.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 2101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2104 DBREF 6KQP A 1864 2083 UNP Q96L73 NSD1_HUMAN 1864 2083 SEQRES 1 A 220 ASP LYS LYS PRO PRO PRO TYR LYS HIS ILE LYS VAL ASN SEQRES 2 A 220 ARG PRO ILE GLY ARG VAL GLN ILE PHE THR ALA ASP LEU SEQRES 3 A 220 SER GLU ILE PRO ARG CYS ASN CYS LYS ALA THR ASP GLU SEQRES 4 A 220 ASN PRO CYS GLY ILE ASP SER GLU CYS ILE ASN ARG MET SEQRES 5 A 220 LEU LEU TYR GLU CYS HIS PRO THR VAL CYS PRO ALA GLY SEQRES 6 A 220 GLY ARG CYS GLN ASN GLN CYS PHE SER LYS ARG GLN TYR SEQRES 7 A 220 PRO GLU VAL GLU ILE PHE ARG THR LEU GLN ARG GLY TRP SEQRES 8 A 220 GLY LEU ARG THR LYS THR ASP ILE LYS LYS GLY GLU PHE SEQRES 9 A 220 VAL ASN GLU TYR VAL GLY GLU LEU ILE ASP GLU GLU GLU SEQRES 10 A 220 CYS ARG ALA ARG ILE ARG TYR ALA GLN GLU HIS ASP ILE SEQRES 11 A 220 THR ASN PHE TYR MET LEU THR LEU ASP LYS ASP ARG ILE SEQRES 12 A 220 ILE ASP ALA GLY PRO LYS GLY ASN TYR ALA ARG PHE MET SEQRES 13 A 220 ASN HIS CYS CYS GLN PRO ASN CYS GLU THR GLN LYS TRP SEQRES 14 A 220 SER VAL ASN GLY ASP THR ARG VAL GLY LEU PHE ALA LEU SEQRES 15 A 220 SER ASP ILE LYS ALA GLY THR GLU LEU THR PHE ASN TYR SEQRES 16 A 220 ASN LEU GLU CYS LEU GLY ASN GLY LYS THR VAL CYS LYS SEQRES 17 A 220 CYS GLY ALA PRO ASN CYS SER GLY PHE LEU GLY VAL HET SAM A2101 27 HET ZN A2102 1 HET ZN A2103 1 HET ZN A2104 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 ZN 3(ZN 2+) FORMUL 6 HOH *46(H2 O) HELIX 1 AA1 ASP A 1888 ILE A 1892 5 5 HELIX 2 AA2 CYS A 1911 LEU A 1916 1 6 HELIX 3 AA3 ALA A 1927 CYS A 1931 5 5 HELIX 4 AA4 GLN A 1934 ARG A 1939 1 6 HELIX 5 AA5 ASP A 1977 HIS A 1991 1 15 HELIX 6 AA6 TYR A 2015 MET A 2019 5 5 SHEET 1 AA1 4 LYS A1871 HIS A1872 0 SHEET 2 AA1 4 ARG A2005 GLY A2013 1 O PRO A2011 N LYS A1871 SHEET 3 AA1 4 GLY A1973 ILE A1976 -1 N GLU A1974 O ASP A2008 SHEET 4 AA1 4 ARG A1877 PRO A1878 1 N ARG A1877 O LEU A1975 SHEET 1 AA2 4 LYS A1871 HIS A1872 0 SHEET 2 AA2 4 ARG A2005 GLY A2013 1 O PRO A2011 N LYS A1871 SHEET 3 AA2 4 MET A1998 ASP A2002 -1 N LEU A1999 O ILE A2007 SHEET 4 AA2 4 CYS A2062 LEU A2063 -1 O LEU A2063 N MET A1998 SHEET 1 AA3 2 VAL A1944 ARG A1948 0 SHEET 2 AA3 2 TRP A1954 THR A1958 -1 O GLY A1955 N PHE A1947 SHEET 1 AA4 3 PHE A1967 GLU A1970 0 SHEET 2 AA4 3 ASP A2037 ALA A2044 -1 O LEU A2042 N ASN A1969 SHEET 3 AA4 3 CYS A2027 VAL A2034 -1 N GLN A2030 O GLY A2041 SHEET 1 AA5 2 ASN A2020 HIS A2021 0 SHEET 2 AA5 2 THR A2055 PHE A2056 1 O PHE A2056 N ASN A2020 LINK SG CYS A1895 ZN ZN A2104 1555 1555 2.13 LINK SG CYS A1897 ZN ZN A2104 1555 1555 2.36 LINK SG CYS A1905 ZN ZN A2103 1555 1555 2.15 LINK SG CYS A1905 ZN ZN A2104 1555 1555 2.33 LINK SG CYS A1911 ZN ZN A2104 1555 1555 2.30 LINK SG CYS A1920 ZN ZN A2103 1555 1555 2.37 LINK SG CYS A1925 ZN ZN A2103 1555 1555 2.36 LINK SG CYS A1931 ZN ZN A2103 1555 1555 2.23 LINK SG CYS A2023 ZN ZN A2102 1555 1555 2.51 LINK SG CYS A2070 ZN ZN A2102 1555 1555 2.39 LINK SG CYS A2072 ZN ZN A2102 1555 1555 2.16 LINK SG CYS A2077 ZN ZN A2102 1555 1555 2.37 SITE 1 AC1 15 ARG A1952 TRP A1954 THR A1994 ASN A1995 SITE 2 AC1 15 PHE A1996 TYR A1997 ARG A2017 ASN A2020 SITE 3 AC1 15 HIS A2021 TYR A2058 ASN A2065 VAL A2069 SITE 4 AC1 15 CYS A2070 LYS A2071 HOH A2209 SITE 1 AC2 4 CYS A2023 CYS A2070 CYS A2072 CYS A2077 SITE 1 AC3 4 CYS A1905 CYS A1920 CYS A1925 CYS A1931 SITE 1 AC4 5 CYS A1895 CYS A1897 CYS A1905 CYS A1911 SITE 2 AC4 5 CYS A1920 CRYST1 91.649 91.649 60.582 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016507 0.00000