HEADER HYDROLASE 22-AUG-19 6KRN TITLE CRYSTAL STRUCTURE OF GH30 XYLANASE B FROM TALAROMYCES CELLULOLYTICUS TITLE 2 EXPRESSED BY PICHIA PASTORIS IN COMPLEX WITH ALDOTRIURONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATING FACTOR ALPHA,GH30 XYLANASE B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA MATING PHEROMONE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FUSION PROTEIN OF MATING FACTOR ALPHA (UNP COMPND 7 RESIDUES 1-89), LINKER, AND GH30 XYLANASE B (UNP RESIDUES 23-474). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES UVARUM, TALAROMYCES SOURCE 3 CELLULOLYTICUS CF-2612; SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 230603, 87693; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 644223 KEYWDS XYLANASE, GLUCURONOXYLANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKAMICHI,M.WATANABE,H.INOUE REVDAT 3 22-NOV-23 6KRN 1 HETSYN LINK REVDAT 2 29-JUL-20 6KRN 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 17-JUN-20 6KRN 0 JRNL AUTH Y.NAKAMICHI,M.WATANABE,A.MATSUSHIKA,H.INOUE JRNL TITL SUBSTRATE RECOGNITION BY A BIFUNCTIONAL GH30-7 XYLANASE B JRNL TITL 2 FROM TALAROMYCES CELLULOLYTICUS. JRNL REF FEBS OPEN BIO V. 10 1180 2020 JRNL REFN ESSN 2211-5463 JRNL PMID 32359208 JRNL DOI 10.1002/2211-5463.12873 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 71087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3554 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4900 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 249 REMARK 3 SOLVENT ATOMS : 498 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21300 REMARK 3 B22 (A**2) : 0.10100 REMARK 3 B33 (A**2) : -1.31400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3925 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3340 ; 0.036 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5346 ; 1.704 ; 1.727 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7811 ; 3.179 ; 1.652 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;35.378 ;23.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;12.785 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4323 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 810 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 679 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2030 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 335 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 2.281 ; 2.306 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1852 ; 2.281 ; 2.304 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2325 ; 2.892 ; 3.449 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2326 ; 2.891 ; 3.451 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2072 ; 3.257 ; 2.604 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2072 ; 3.257 ; 2.604 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3021 ; 4.262 ; 3.807 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3022 ; 4.261 ; 3.808 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6KRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71087 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.653 REMARK 200 RESOLUTION RANGE LOW (A) : 33.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04648 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.6 REMARK 200 STARTING MODEL: 6IUJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, MAGNESIUM CHLORIDE, REMARK 280 PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.62550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.20900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.20900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.62550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -70 REMARK 465 ARG A -69 REMARK 465 PHE A -68 REMARK 465 PRO A -67 REMARK 465 SER A -66 REMARK 465 ILE A -65 REMARK 465 PHE A -64 REMARK 465 THR A -63 REMARK 465 ALA A -62 REMARK 465 VAL A -61 REMARK 465 LEU A -60 REMARK 465 PHE A -59 REMARK 465 ALA A -58 REMARK 465 ALA A -57 REMARK 465 SER A -56 REMARK 465 SER A -55 REMARK 465 ALA A -54 REMARK 465 LEU A -53 REMARK 465 ALA A -52 REMARK 465 ALA A -51 REMARK 465 PRO A -50 REMARK 465 VAL A -49 REMARK 465 ASN A -48 REMARK 465 THR A -47 REMARK 465 THR A -46 REMARK 465 THR A -45 REMARK 465 GLU A -44 REMARK 465 ASP A -43 REMARK 465 GLU A -42 REMARK 465 THR A -41 REMARK 465 ALA A -40 REMARK 465 GLN A -39 REMARK 465 ILE A -38 REMARK 465 PRO A -37 REMARK 465 ALA A -36 REMARK 465 GLU A -35 REMARK 465 ALA A -34 REMARK 465 VAL A -33 REMARK 465 ILE A -32 REMARK 465 GLY A -31 REMARK 465 TYR A -30 REMARK 465 SER A -29 REMARK 465 ASP A -28 REMARK 465 LEU A -27 REMARK 465 GLU A -26 REMARK 465 GLY A -25 REMARK 465 ASP A -24 REMARK 465 PHE A -23 REMARK 465 ASP A -22 REMARK 465 VAL A -21 REMARK 465 ALA A -20 REMARK 465 VAL A -19 REMARK 465 LEU A -18 REMARK 465 PRO A -17 REMARK 465 PHE A -16 REMARK 465 SER A -15 REMARK 465 ASN A -14 REMARK 465 SER A -13 REMARK 465 THR A -12 REMARK 465 ASN A -11 REMARK 465 ASN A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 ILE A -5 REMARK 465 ASN A -4 REMARK 465 THR A -3 REMARK 465 THR A -2 REMARK 465 ILE A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ILE A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 LYS A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 474 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 XYP E 1 O5 XYP E 2 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -129.42 -123.61 REMARK 500 SER A 92 -118.87 34.18 REMARK 500 TYR A 117 -55.36 -144.48 REMARK 500 SER A 156 -130.95 57.42 REMARK 500 SER A 214 134.02 168.72 REMARK 500 TRP A 298 143.93 -174.11 REMARK 500 ALA A 312 -59.05 -135.95 REMARK 500 ASP A 313 30.23 -149.88 REMARK 500 TRP A 341 -122.59 -71.59 REMARK 500 THR A 348 50.73 -117.17 REMARK 500 ASN A 358 -121.17 47.86 REMARK 500 ASP A 443 -72.46 -86.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6KRL RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT ALDOTRIURONIC ACID REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE REGION IS FROM A COMMERCIAL VECTOR PPIC9K (THERMO REMARK 999 FISHER SCIENTIFIC). DBREF 6KRN A -70 18 UNP P25501 MFA1_SACUV 1 89 DBREF1 6KRN A 23 474 UNP A0A4V8H018_9EURO DBREF2 6KRN A A0A4V8H018 23 474 SEQADV 6KRN SER A -29 UNP P25501 LEU 42 SEE SEQUENCE DETAILS SEQADV 6KRN GLU A 12 UNP P25501 ASP 83 SEE SEQUENCE DETAILS SEQADV 6KRN TYR A 19 UNP P25501 LINKER SEQADV 6KRN VAL A 20 UNP P25501 LINKER SEQADV 6KRN GLU A 21 UNP P25501 LINKER SEQADV 6KRN PHE A 22 UNP P25501 LINKER SEQRES 1 A 545 MET ARG PHE PRO SER ILE PHE THR ALA VAL LEU PHE ALA SEQRES 2 A 545 ALA SER SER ALA LEU ALA ALA PRO VAL ASN THR THR THR SEQRES 3 A 545 GLU ASP GLU THR ALA GLN ILE PRO ALA GLU ALA VAL ILE SEQRES 4 A 545 GLY TYR SER ASP LEU GLU GLY ASP PHE ASP VAL ALA VAL SEQRES 5 A 545 LEU PRO PHE SER ASN SER THR ASN ASN GLY LEU LEU PHE SEQRES 6 A 545 ILE ASN THR THR ILE ALA SER ILE ALA ALA LYS GLU GLU SEQRES 7 A 545 GLY VAL SER LEU GLU LYS ARG GLU ALA GLU ALA TYR VAL SEQRES 8 A 545 GLU PHE GLN ILE ASN VAL ASP LEU GLN ALA ARG TYR GLN SEQRES 9 A 545 SER VAL ASP GLY PHE GLY CYS SER GLN ALA PHE GLN ARG SEQRES 10 A 545 ALA GLU ASP ILE PHE GLY LYS TYR GLY LEU SER PRO LYS SEQRES 11 A 545 ASN GLN SER TYR VAL LEU ASP LEU MET TYR SER GLU GLU SEQRES 12 A 545 ARG GLY ALA GLY PHE THR ILE LEU ARG ASN GLY ILE GLY SEQRES 13 A 545 SER SER ASN SER SER THR SER ASN LEU MET ASN SER ILE SEQRES 14 A 545 GLU PRO PHE SER PRO GLY SER PRO SER SER THR PRO ASN SEQRES 15 A 545 TYR THR TRP ASP HIS TYR ASN SER GLY GLN PHE PRO LEU SEQRES 16 A 545 SER GLN GLN ALA ARG ALA ARG GLY LEU PRO TYR ILE TYR SEQRES 17 A 545 ALA ASP ALA TRP SER ALA PRO GLY TYR MET LYS THR ASN SEQRES 18 A 545 GLN ASP GLU ASN TRP SER GLY PHE LEU CYS GLY ILE GLU SEQRES 19 A 545 GLY GLU THR CYS PRO SER GLY ASP TRP ARG GLN ALA TYR SEQRES 20 A 545 ALA ASP TYR LEU VAL GLN TYR VAL LYS PHE TYR ALA GLU SEQRES 21 A 545 SER GLY VAL PRO VAL THR HIS LEU GLY PHE LEU ASN GLU SEQRES 22 A 545 PRO GLN GLU VAL VAL SER TYR ALA SER MET GLY SER ASN SEQRES 23 A 545 GLY THR GLN ALA ALA GLU PHE VAL LYS ILE LEU GLY GLN SEQRES 24 A 545 THR LEU GLU ARG GLU GLY ILE ASP ILE GLU LEU THR CYS SEQRES 25 A 545 CYS ASP GLY VAL GLY TRP SER GLU GLN GLU ALA MET ILE SEQRES 26 A 545 PRO GLY LEU GLN VAL VAL GLY PRO ASP GLY LYS SER ALA SEQRES 27 A 545 GLU ASP TYR LEU SER VAL VAL THR GLY HIS GLY TYR SER SEQRES 28 A 545 SER ALA PRO THR PHE PRO LEU SER THR LYS ARG ARG THR SEQRES 29 A 545 TRP LEU THR GLU TRP THR ASP LEU SER GLY ALA PHE THR SEQRES 30 A 545 PRO TYR THR PHE PHE ALA ASP GLY GLY ALA GLY GLU GLY SEQRES 31 A 545 MET THR TRP ALA ASN HIS ILE GLN THR ALA PHE VAL ASN SEQRES 32 A 545 ALA ASN VAL SER ALA PHE ILE TYR TRP ILE GLY ALA GLU SEQRES 33 A 545 ASN SER THR THR ASN SER GLY MET ILE ASN LEU ILE ASN SEQRES 34 A 545 ASP GLU VAL ILE PRO SER LYS ARG PHE TRP SER MET ALA SEQRES 35 A 545 SER PHE SER LYS PHE VAL ARG PRO ASN ALA GLN ARG VAL SEQRES 36 A 545 LYS ALA THR SER SER ASP ALA SER VAL THR VAL SER ALA SEQRES 37 A 545 PHE GLU ASN THR ASN GLY VAL VAL ALA ILE GLN VAL ILE SEQRES 38 A 545 ASN ASN GLY THR SER ALA ALA SER LEU THR ILE ASP LEU SEQRES 39 A 545 GLY LYS THR HIS LYS GLU VAL LYS LYS VAL VAL PRO TRP SEQRES 40 A 545 VAL THR SER ASN ASP TYR ASP LEU GLU GLU MET SER GLU SEQRES 41 A 545 ILE ASP VAL LYS HIS ASN SER PHE LEU ALA SER VAL PRO SEQRES 42 A 545 ALA ARG SER LEU THR SER PHE VAL THR GLU CYS GLU HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET XYP E 1 10 HET XYP E 2 9 HET GCV E 3 13 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG G 1 14 HET NAG G 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM GCV 4-O-METHYL-ALPHA-D-GLUCOPYRANURONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN GCV 4-O-METHYL-ALPHA-D-GLUCURONIC ACID; 4-O-METHYL-D- HETSYN 2 GCV GLUCURONIC ACID; 4-O-METHYL-GLUCURONIC ACID FORMUL 2 NAG 10(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 5 XYP 2(C5 H10 O5) FORMUL 5 GCV C7 H12 O7 FORMUL 8 HOH *498(H2 O) HELIX 1 AA1 GLN A 45 PHE A 51 1 7 HELIX 2 AA2 SER A 57 SER A 70 1 14 HELIX 3 AA3 GLY A 120 ARG A 131 1 12 HELIX 4 AA4 PRO A 144 LYS A 148 5 5 HELIX 5 AA5 TRP A 172 SER A 190 1 19 HELIX 6 AA6 ASN A 215 GLY A 234 1 20 HELIX 7 AA7 GLY A 246 ALA A 252 1 7 HELIX 8 AA8 MET A 253 VAL A 259 1 7 HELIX 9 AA9 SER A 266 TYR A 270 1 5 HELIX 10 AB1 GLU A 318 ASN A 332 1 15 HELIX 11 AB2 SER A 364 VAL A 377 1 14 SHEET 1 AA1 3 GLU A 445 GLU A 446 0 SHEET 2 AA1 3 LYS A 432 THR A 438 -1 N VAL A 437 O GLU A 445 SHEET 3 AA1 3 ILE A 450 ASP A 451 -1 O ILE A 450 N VAL A 433 SHEET 1 AA2 9 GLU A 445 GLU A 446 0 SHEET 2 AA2 9 LYS A 432 THR A 438 -1 N VAL A 437 O GLU A 445 SHEET 3 AA2 9 SER A 465 THR A 471 -1 O LEU A 466 N THR A 438 SHEET 4 AA2 9 VAL A 405 ASN A 411 -1 N ILE A 407 O PHE A 469 SHEET 5 AA2 9 VAL A 393 GLU A 399 -1 N THR A 394 O ILE A 410 SHEET 6 AA2 9 GLN A 382 SER A 388 -1 N GLN A 382 O GLU A 399 SHEET 7 AA2 9 PHE A 22 SER A 34 -1 N TYR A 32 O ARG A 383 SHEET 8 AA2 9 ALA A 417 ASP A 422 1 O THR A 420 N ILE A 24 SHEET 9 AA2 9 SER A 456 VAL A 461 -1 O ALA A 459 N LEU A 419 SHEET 1 AA311 VAL A 361 PRO A 363 0 SHEET 2 AA311 GLY A 352 LEU A 356 -1 N ASN A 355 O ILE A 362 SHEET 3 AA311 ALA A 337 ASN A 346 1 N GLU A 345 O LEU A 356 SHEET 4 AA311 ARG A 292 GLU A 297 1 N LEU A 295 O ILE A 339 SHEET 5 AA311 LEU A 271 HIS A 277 1 N GLY A 276 O THR A 296 SHEET 6 AA311 GLU A 238 GLY A 244 1 N LEU A 239 O SER A 272 SHEET 7 AA311 HIS A 196 GLY A 198 1 N LEU A 197 O GLU A 238 SHEET 8 AA311 TYR A 135 ALA A 140 1 N ALA A 138 O GLY A 198 SHEET 9 AA311 ILE A 79 ILE A 84 1 N LEU A 80 O TYR A 137 SHEET 10 AA311 GLY A 37 SER A 41 1 N CYS A 40 O ARG A 81 SHEET 11 AA311 ALA A 337 ASN A 346 1 O TYR A 340 N GLY A 39 SSBOND 1 CYS A 160 CYS A 167 1555 1555 2.04 SSBOND 2 CYS A 241 CYS A 242 1555 1555 2.07 LINK ND2 ASN A 60 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 88 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 334 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN A 346 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN A 412 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.45 LINK O4 XYP E 1 C1 XYP E 2 1555 1555 1.37 LINK O2 XYP E 2 C1 GCV E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 CISPEP 1 CYS A 241 CYS A 242 0 3.68 CRYST1 63.251 78.700 118.418 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008445 0.00000