HEADER METAL BINDING PROTEIN 24-AUG-19 6KSN TITLE STRUCTURE OF A ZN-BOUND CAMELID SINGLE DOMAIN ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ICAB3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_TAXID: 9838; SOURCE 4 GENE: VHH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS INDIAN CAMELID SINGLE DOMAIN ANTIBODY, VHH, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUMAR,A.ATHREYA,A.PENMATSA REVDAT 4 09-OCT-24 6KSN 1 REMARK REVDAT 3 22-NOV-23 6KSN 1 LINK REVDAT 2 15-JAN-20 6KSN 1 JRNL REVDAT 1 20-NOV-19 6KSN 0 JRNL AUTH S.KUMAR,I.MAHENDRAN,A.ATHREYA,R.RANJAN,A.PENMATSA JRNL TITL ISOLATION AND STRUCTURAL CHARACTERIZATION OF A ZN2+-BOUND JRNL TITL 2 SINGLE-DOMAIN ANTIBODY AGAINST NORC, A PUTATIVE MULTIDRUG JRNL TITL 3 EFFLUX TRANSPORTER IN BACTERIA. JRNL REF J.BIOL.CHEM. V. 295 55 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31699895 JRNL DOI 10.1074/JBC.RA119.010902 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2800 - 4.4700 1.00 2829 140 0.1679 0.1953 REMARK 3 2 4.4700 - 3.5500 1.00 2714 159 0.1565 0.1920 REMARK 3 3 3.5500 - 3.1000 1.00 2690 155 0.1842 0.2405 REMARK 3 4 3.1000 - 2.8200 1.00 2709 132 0.2245 0.2730 REMARK 3 5 2.8200 - 2.6200 1.00 2626 161 0.2236 0.2652 REMARK 3 6 2.6200 - 2.4600 0.99 2696 130 0.2384 0.3026 REMARK 3 7 2.4600 - 2.3400 0.99 2652 134 0.2533 0.2878 REMARK 3 8 2.3400 - 2.2400 0.99 2627 155 0.2448 0.2850 REMARK 3 9 2.2400 - 2.1500 0.99 2641 129 0.2634 0.2723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.464 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2109 REMARK 3 ANGLE : 0.914 2818 REMARK 3 CHIRALITY : 0.054 291 REMARK 3 PLANARITY : 0.005 361 REMARK 3 DIHEDRAL : 5.835 1394 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 8.7899 -42.5001 12.0704 REMARK 3 T TENSOR REMARK 3 T11: 0.2285 T22: 0.7541 REMARK 3 T33: 0.4406 T12: -0.0586 REMARK 3 T13: 0.0375 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 4.6009 L22: 0.8967 REMARK 3 L33: 0.8855 L12: 0.2300 REMARK 3 L13: 1.9493 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.3113 S13: 0.2982 REMARK 3 S21: -0.1094 S22: -0.0144 S23: 0.0936 REMARK 3 S31: -0.4908 S32: -0.1182 S33: 0.0653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 4 THROUGH 91 OR REMARK 3 (RESID 92 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 93 REMARK 3 THROUGH 126 OR RESID 128 THROUGH 135)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 4 OR (RESID 5 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 6 OR REMARK 3 (RESID 7 AND (NAME N OR NAME CA OR NAME C REMARK 3 OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 8 THROUGH 49 OR (RESID 50 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O OR NAME REMARK 3 CB OR NAME CG OR NAME CD )) OR RESID 51 REMARK 3 THROUGH 126 OR RESID 128 THROUGH 134 OR REMARK 3 (RESID 135 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.01230 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 1.14600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH8.25, 3.5M NA FORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.05333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.52667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.52667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.05333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CD OE1 NE2 REMARK 470 GLN A 7 CD OE1 NE2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 LYS A 50 CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 SER A 135 OG REMARK 470 GLN B 17 CG CD OE1 NE2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 ASN B 92 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 70 O HOH A 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 5 36.57 -96.25 REMARK 500 SER A 117 -0.39 -140.54 REMARK 500 SER B 34 115.55 -174.42 REMARK 500 SER B 117 -3.72 -143.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 ASP A 106 OD1 125.7 REMARK 620 3 HIS A 109 NE2 114.6 104.9 REMARK 620 4 HIS A 116 ND1 113.4 97.6 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 34 O REMARK 620 2 SER B 37 O 89.7 REMARK 620 3 EDO B 203 O1 94.2 101.4 REMARK 620 4 EDO B 203 O2 163.1 103.4 73.0 REMARK 620 5 HOH B 345 O 77.1 160.1 94.5 92.6 REMARK 620 6 HOH B 358 O 102.7 90.9 159.1 87.9 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 40 SG REMARK 620 2 ASP B 106 OD1 122.7 REMARK 620 3 HIS B 109 NE2 119.5 99.2 REMARK 620 4 HIS B 116 ND1 110.5 96.7 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 212 DBREF 6KSN A 1 135 PDB 6KSN 6KSN 1 135 DBREF 6KSN B 1 135 PDB 6KSN 6KSN 1 135 SEQRES 1 A 135 MET ASP ALA SER GLN VAL GLN LEU GLU GLU SER GLY GLY SEQRES 2 A 135 GLY SER VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 A 135 ALA ALA SER GLY TYR MET TYR SER THR TYR SER THR TYR SEQRES 4 A 135 CYS MET GLY TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG SEQRES 5 A 135 GLU GLY VAL ALA PHE ILE LYS ARG GLY ASP HIS SER THR SEQRES 6 A 135 TYR TYR THR ASP SER VAL LYS GLY ARG PHE THR ILE SER SEQRES 7 A 135 GLN ASP SER ALA LYS ASN THR VAL SER LEU GLN MET ASN SEQRES 8 A 135 ASN LEU LYS PRO GLU ASP THR ALA ILE TYR TYR CYS ALA SEQRES 9 A 135 ALA ASP PHE ALA HIS SER PHE LEU LEU SER VAL HIS SER SEQRES 10 A 135 GLY ALA GLY GLN TYR SER TYR TRP GLY GLN GLY THR GLN SEQRES 11 A 135 VAL THR VAL SER SER SEQRES 1 B 135 MET ASP ALA SER GLN VAL GLN LEU GLU GLU SER GLY GLY SEQRES 2 B 135 GLY SER VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 B 135 ALA ALA SER GLY TYR MET TYR SER THR TYR SER THR TYR SEQRES 4 B 135 CYS MET GLY TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG SEQRES 5 B 135 GLU GLY VAL ALA PHE ILE LYS ARG GLY ASP HIS SER THR SEQRES 6 B 135 TYR TYR THR ASP SER VAL LYS GLY ARG PHE THR ILE SER SEQRES 7 B 135 GLN ASP SER ALA LYS ASN THR VAL SER LEU GLN MET ASN SEQRES 8 B 135 ASN LEU LYS PRO GLU ASP THR ALA ILE TYR TYR CYS ALA SEQRES 9 B 135 ALA ASP PHE ALA HIS SER PHE LEU LEU SER VAL HIS SER SEQRES 10 B 135 GLY ALA GLY GLN TYR SER TYR TRP GLY GLN GLY THR GLN SEQRES 11 B 135 VAL THR VAL SER SER HET ZN A 201 1 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET EDO A 209 4 HET NA B 201 1 HET ZN B 202 1 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET EDO B 208 4 HET EDO B 209 4 HET EDO B 210 4 HET EDO B 211 4 HET EDO B 212 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 EDO 18(C2 H6 O2) FORMUL 12 NA NA 1+ FORMUL 24 HOH *121(H2 O) HELIX 1 AA1 ASP A 69 LYS A 72 5 4 HELIX 2 AA2 LYS A 94 THR A 98 5 5 HELIX 3 AA3 GLY A 118 TYR A 122 5 5 HELIX 4 AA4 ASP B 69 LYS B 72 5 4 HELIX 5 AA5 LYS B 94 THR B 98 5 5 HELIX 6 AA6 GLY B 118 TYR B 122 5 5 SHEET 1 AA1 4 GLN A 7 GLY A 12 0 SHEET 2 AA1 4 LEU A 22 SER A 29 -1 O SER A 29 N GLN A 7 SHEET 3 AA1 4 THR A 85 MET A 90 -1 O MET A 90 N LEU A 22 SHEET 4 AA1 4 PHE A 75 ASP A 80 -1 N THR A 76 O GLN A 89 SHEET 1 AA2 6 GLY A 14 GLN A 17 0 SHEET 2 AA2 6 THR A 129 SER A 134 1 O GLN A 130 N GLY A 14 SHEET 3 AA2 6 ALA A 99 ALA A 105 -1 N TYR A 101 O THR A 129 SHEET 4 AA2 6 CYS A 40 GLN A 46 -1 N PHE A 44 O TYR A 102 SHEET 5 AA2 6 GLU A 53 LYS A 59 -1 O ILE A 58 N MET A 41 SHEET 6 AA2 6 THR A 65 TYR A 67 -1 O TYR A 66 N PHE A 57 SHEET 1 AA3 4 GLY A 14 GLN A 17 0 SHEET 2 AA3 4 THR A 129 SER A 134 1 O GLN A 130 N GLY A 14 SHEET 3 AA3 4 ALA A 99 ALA A 105 -1 N TYR A 101 O THR A 129 SHEET 4 AA3 4 TYR A 124 TRP A 125 -1 O TYR A 124 N ALA A 105 SHEET 1 AA4 4 GLN B 7 GLY B 12 0 SHEET 2 AA4 4 LEU B 22 SER B 29 -1 O ALA B 27 N GLU B 9 SHEET 3 AA4 4 THR B 85 MET B 90 -1 O MET B 90 N LEU B 22 SHEET 4 AA4 4 PHE B 75 ASP B 80 -1 N SER B 78 O SER B 87 SHEET 1 AA5 6 GLY B 14 GLN B 17 0 SHEET 2 AA5 6 THR B 129 SER B 134 1 O SER B 134 N VAL B 16 SHEET 3 AA5 6 ALA B 99 ALA B 105 -1 N TYR B 101 O THR B 129 SHEET 4 AA5 6 CYS B 40 GLN B 46 -1 N PHE B 44 O TYR B 102 SHEET 5 AA5 6 GLU B 53 LYS B 59 -1 O GLU B 53 N ARG B 45 SHEET 6 AA5 6 THR B 65 TYR B 67 -1 O TYR B 66 N PHE B 57 SHEET 1 AA6 4 GLY B 14 GLN B 17 0 SHEET 2 AA6 4 THR B 129 SER B 134 1 O SER B 134 N VAL B 16 SHEET 3 AA6 4 ALA B 99 ALA B 105 -1 N TYR B 101 O THR B 129 SHEET 4 AA6 4 TYR B 124 TRP B 125 -1 O TYR B 124 N ALA B 105 SHEET 1 AA7 2 SER B 37 THR B 38 0 SHEET 2 AA7 2 HIS B 109 SER B 110 -1 O HIS B 109 N THR B 38 SSBOND 1 CYS A 26 CYS A 103 1555 1555 2.02 SSBOND 2 CYS B 26 CYS B 103 1555 1555 2.05 LINK SG CYS A 40 ZN ZN A 201 1555 1555 2.17 LINK OD1 ASP A 106 ZN ZN A 201 1555 1555 1.93 LINK NE2 HIS A 109 ZN ZN A 201 1555 1555 2.13 LINK ND1 HIS A 116 ZN ZN A 201 1555 1555 2.16 LINK O SER B 34 NA NA B 201 1555 1555 2.31 LINK O SER B 37 NA NA B 201 1555 1555 2.33 LINK SG CYS B 40 ZN ZN B 202 1555 1555 2.19 LINK OD1 ASP B 106 ZN ZN B 202 1555 1555 1.90 LINK NE2 HIS B 109 ZN ZN B 202 1555 1555 2.12 LINK ND1 HIS B 116 ZN ZN B 202 1555 1555 2.05 LINK NA NA B 201 O1 EDO B 203 1555 1555 2.42 LINK NA NA B 201 O2 EDO B 203 1555 1555 2.41 LINK NA NA B 201 O HOH B 345 1555 1555 2.51 LINK NA NA B 201 O HOH B 358 1555 1555 2.55 SITE 1 AC1 4 CYS A 40 ASP A 106 HIS A 109 HIS A 116 SITE 1 AC2 6 LEU A 113 HIS A 116 HOH A 317 HOH A 344 SITE 2 AC2 6 TYR B 36 HOH B 361 SITE 1 AC3 5 ARG A 52 ALA A 119 TYR A 122 ARG B 52 SITE 2 AC3 5 TRP B 125 SITE 1 AC4 5 ARG A 52 TYR A 102 HOH A 309 TRP B 125 SITE 2 AC4 5 GLN B 127 SITE 1 AC5 5 SER A 110 LEU A 113 HOH A 337 THR B 35 SITE 2 AC5 5 HOH B 339 SITE 1 AC6 4 GLY A 14 SER A 15 GLN A 130 THR A 132 SITE 1 AC7 2 TYR A 66 SER A 117 SITE 1 AC8 3 GLY A 73 PHE A 75 THR A 76 SITE 1 AC9 2 GLY A 14 SER A 15 SITE 1 AD1 5 SER B 34 SER B 37 EDO B 203 HOH B 345 SITE 2 AD1 5 HOH B 358 SITE 1 AD2 4 CYS B 40 ASP B 106 HIS B 109 HIS B 116 SITE 1 AD3 6 TYR B 31 MET B 32 SER B 34 SER B 37 SITE 2 AD3 6 TYR B 39 NA B 201 SITE 1 AD4 6 SER A 34 THR A 35 GLY A 120 GLN B 46 SITE 2 AD4 6 HOH B 344 HOH B 348 SITE 1 AD5 6 GLU A 51 HOH A 327 ALA B 119 TYR B 122 SITE 2 AD5 6 TRP B 125 HOH B 334 SITE 1 AD6 6 TYR B 36 SER B 37 GLU B 51 SER B 110 SITE 2 AD6 6 HOH B 305 HOH B 328 SITE 1 AD7 5 TYR B 31 MET B 32 PHE B 107 ALA B 108 SITE 2 AD7 5 TYR B 124 SITE 1 AD8 3 HIS B 63 GLN B 79 HOH B 301 SITE 1 AD9 3 GLY B 73 PHE B 75 THR B 76 SITE 1 AE1 7 ALA B 47 LYS B 50 PRO B 95 GLU B 96 SITE 2 AE1 7 THR B 98 HOH B 320 HOH B 347 SITE 1 AE2 4 TYR B 66 TYR B 67 ASP B 69 HOH B 331 SITE 1 AE3 5 PHE B 107 GLY B 120 GLN B 121 HOH B 304 SITE 2 AE3 5 HOH B 333 CRYST1 106.880 106.880 70.580 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009356 0.005402 0.000000 0.00000 SCALE2 0.000000 0.010804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014168 0.00000