HEADER HYDROLASE 31-AUG-19 6KUB TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM HISTO-ASPARTIC PROTEASE TITLE 2 (HAP) ZYMOGEN (FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTO-ASPARTIC PROTEASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: HAP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS HISTO-ASPARTIC PROTEASE, HAP, PLASMEPSIN, PROPLASMEPSIN, ZYMOGEN, KEYWDS 2 ASPARTIC PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.RATHORE,V.MISHRA,P.BHAUMIK REVDAT 3 22-NOV-23 6KUB 1 REMARK REVDAT 2 03-FEB-21 6KUB 1 JRNL REVDAT 1 27-MAY-20 6KUB 0 JRNL AUTH I.RATHORE,V.MISHRA,C.PATEL,H.XIAO,A.GUSTCHINA,A.WLODAWER, JRNL AUTH 2 R.Y.YADA,P.BHAUMIK JRNL TITL ACTIVATION MECHANISM OF PLASMEPSINS, PEPSIN-LIKE ASPARTIC JRNL TITL 2 PROTEASES FROM PLASMODIUM, FOLLOWS A UNIQUE TRANS-ACTIVATION JRNL TITL 3 PATHWAY. JRNL REF FEBS J. V. 288 678 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32385863 JRNL DOI 10.1111/FEBS.15363 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.31000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.959 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3221 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3068 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4356 ; 1.607 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7130 ; 0.960 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 7.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;35.997 ;25.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;16.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;14.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3557 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 699 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 117P REMARK 3 ORIGIN FOR THE GROUP (A): 3.4601 -6.5720 -23.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1604 REMARK 3 T33: 0.1133 T12: 0.0022 REMARK 3 T13: -0.0271 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 6.1081 L22: 0.5909 REMARK 3 L33: 1.0443 L12: -0.5673 REMARK 3 L13: -0.5133 L23: 0.3813 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0337 S13: -0.3891 REMARK 3 S21: 0.0041 S22: -0.0205 S23: 0.1355 REMARK 3 S31: -0.0274 S32: -0.0181 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118P A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3663 9.5750 -27.0432 REMARK 3 T TENSOR REMARK 3 T11: 0.6647 T22: 0.6236 REMARK 3 T33: 0.2596 T12: -0.1315 REMARK 3 T13: 0.0282 T23: 0.0935 REMARK 3 L TENSOR REMARK 3 L11: 15.1903 L22: 4.1682 REMARK 3 L33: 0.3109 L12: 4.7028 REMARK 3 L13: -0.9689 L23: 0.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.3529 S12: 0.6378 S13: -0.5011 REMARK 3 S21: -0.5919 S22: 0.5353 S23: -0.6810 REMARK 3 S31: -0.1438 S32: -0.0018 S33: -0.1825 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7504 3.1385 -27.5604 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.2170 REMARK 3 T33: 0.1193 T12: 0.0203 REMARK 3 T13: -0.1194 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.4226 L22: 0.9655 REMARK 3 L33: 1.8939 L12: 0.2332 REMARK 3 L13: 0.5920 L23: -0.3090 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: 0.0507 S13: 0.0152 REMARK 3 S21: -0.2053 S22: 0.0791 S23: 0.1225 REMARK 3 S31: 0.0234 S32: -0.2051 S33: 0.0656 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6201 7.1272 -13.8549 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1776 REMARK 3 T33: 0.0378 T12: -0.0196 REMARK 3 T13: -0.0700 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.0228 L22: 1.0145 REMARK 3 L33: 1.3980 L12: -0.9379 REMARK 3 L13: -0.0303 L23: 0.7151 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.0118 S13: 0.0097 REMARK 3 S21: -0.1505 S22: 0.0358 S23: 0.0087 REMARK 3 S31: -0.2354 S32: 0.0964 S33: 0.0087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6KUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QVC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE TRIBASIC PH 7.0, REMARK 280 0.1M IMIDAZOLE PH 7.0, 20% W/V POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.45000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.45000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 43.24701 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -59.30646 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 815 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A -1 67.89 62.97 REMARK 500 SER A 120P 122.79 -171.77 REMARK 500 GLU A 7 116.98 22.32 REMARK 500 ASP A 69 -54.21 -129.16 REMARK 500 ILE A 93 76.10 -114.71 REMARK 500 SER A 233 29.91 35.48 REMARK 500 PHE A 241 -0.82 71.55 REMARK 500 ASN A 251 111.95 -36.54 REMARK 500 LEU A 277 55.13 -116.47 REMARK 500 ASN A 288 47.52 -89.13 REMARK 500 LEU A 294 -154.02 -110.85 REMARK 500 GLU A 295 140.85 -34.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 830 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 831 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 832 DISTANCE = 6.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 409 DBREF 6KUB A 77P 328 UNP Q9Y006 Q9Y006_PLAFA 77 451 SEQADV 6KUB ALA A -4 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUB ILE A -3 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUB SER A -2 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUB ASP A -1 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUB PRO A 0 UNP Q9Y006 EXPRESSION TAG SEQRES 1 A 380 ALA ILE SER ASP PRO LYS TYR SER THR VAL GLY PHE ASN SEQRES 2 A 380 ILE GLU ASN SER TYR ASP ARG LEU MET LYS THR ILE LYS SEQRES 3 A 380 GLU HIS LYS LEU LYS ASN TYR ILE LYS GLU SER VAL LYS SEQRES 4 A 380 LEU PHE ASN LYS GLY LEU THR LYS LYS SER TYR LEU GLY SEQRES 5 A 380 SER GLU PHE ASP ASN VAL GLU LEU LYS ASP LEU ALA ASN SEQRES 6 A 380 VAL LEU SER PHE GLY GLU ALA LYS LEU GLY ASP ASN GLY SEQRES 7 A 380 GLN LYS PHE ASN PHE LEU PHE HIS THR ALA SER SER ASN SEQRES 8 A 380 VAL TRP VAL PRO SER ILE LYS CYS THR SER GLU SER CYS SEQRES 9 A 380 GLU SER LYS ASN HIS TYR ASP SER SER LYS SER LYS THR SEQRES 10 A 380 TYR GLU LYS ASP ASP THR PRO VAL LYS LEU THR SER LYS SEQRES 11 A 380 ALA GLY THR ILE SER GLY ILE PHE SER LYS ASP LEU VAL SEQRES 12 A 380 THR ILE GLY LYS LEU SER VAL PRO TYR LYS PHE ILE GLU SEQRES 13 A 380 MET THR GLU ILE VAL GLY PHE GLU PRO PHE TYR SER GLU SEQRES 14 A 380 SER ASP VAL ASP GLY VAL PHE GLY LEU GLY TRP LYS ASP SEQRES 15 A 380 LEU SER ILE GLY SER ILE ASP PRO TYR ILE VAL GLU LEU SEQRES 16 A 380 LYS THR GLN ASN LYS ILE GLU GLN ALA VAL TYR SER ILE SEQRES 17 A 380 TYR LEU PRO PRO GLU ASN LYS ASN LYS GLY TYR LEU THR SEQRES 18 A 380 ILE GLY GLY ILE GLU GLU ARG PHE PHE ASP GLY PRO LEU SEQRES 19 A 380 ASN TYR GLU LYS LEU ASN HIS ASP LEU MET TRP GLN VAL SEQRES 20 A 380 ASP LEU ASP VAL HIS PHE GLY ASN VAL SER SER LYS LYS SEQRES 21 A 380 ALA ASN VAL ILE LEU ASP SER ALA THR SER VAL ILE THR SEQRES 22 A 380 VAL PRO THR GLU PHE PHE ASN GLN PHE VAL GLU SER ALA SEQRES 23 A 380 SER VAL PHE LYS VAL PRO PHE LEU SER LEU TYR VAL THR SEQRES 24 A 380 THR CYS GLY ASN THR LYS LEU PRO THR LEU GLU TYR ARG SEQRES 25 A 380 SER PRO ASN LYS VAL TYR THR LEU GLU PRO LYS GLN TYR SEQRES 26 A 380 LEU GLU PRO LEU GLU ASN ILE PHE SER ALA LEU CYS MET SEQRES 27 A 380 LEU ASN ILE VAL PRO ILE ASP LEU GLU LYS ASN THR PHE SEQRES 28 A 380 VAL LEU GLY ASP PRO PHE MET ARG LYS TYR PHE THR VAL SEQRES 29 A 380 TYR ASP TYR ASP ASN HIS THR VAL GLY PHE ALA LEU ALA SEQRES 30 A 380 LYS ASN LEU HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET PEG A 407 7 HET PEG A 408 7 HET PEG A 409 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 6(C3 H8 O3) FORMUL 8 PEG 3(C4 H10 O3) FORMUL 11 HOH *332(H2 O) HELIX 1 AA1 ASN A 87P HIS A 99P 1 13 HELIX 2 AA2 LEU A 101P LYS A 114P 1 14 HELIX 3 AA3 GLU A 7 ALA A 12 5 6 HELIX 4 AA4 ASP A 59 SER A 63 5 5 HELIX 5 AA5 PRO A 113 SER A 118 1 6 HELIX 6 AA6 PRO A 138 GLN A 146 1 9 HELIX 7 AA7 GLU A 174 ARG A 176 5 3 HELIX 8 AA8 PRO A 223 GLU A 232 1 10 HELIX 9 AA9 GLU A 269 TYR A 273 1 5 HELIX 10 AB1 GLY A 302 LYS A 308 1 7 SHEET 1 AA1 9 GLU A 67 THR A 76 0 SHEET 2 AA1 9 GLY A 80 ILE A 93 -1 O LYS A 88 N GLU A 67 SHEET 3 AA1 9 VAL A 14 LEU A 22 -1 N LYS A 21 O THR A 92 SHEET 4 AA1 9 SER A 79P GLU A 86P-1 N ASN A 84P O SER A 16 SHEET 5 AA1 9 LYS A 165 ILE A 170 -1 O LEU A 168 N VAL A 81P SHEET 6 AA1 9 VAL A 153 TYR A 157 -1 N TYR A 157 O TYR A 167 SHEET 7 AA1 9 TYR A 309 ASP A 314 -1 O TYR A 313 N TYR A 154 SHEET 8 AA1 9 THR A 319 ALA A 325 -1 O THR A 319 N ASP A 314 SHEET 9 AA1 9 PHE A 178 LYS A 186 -1 N ASP A 179 O LEU A 324 SHEET 1 AA213 GLU A 67 THR A 76 0 SHEET 2 AA213 GLY A 80 ILE A 93 -1 O LYS A 88 N GLU A 67 SHEET 3 AA213 LEU A 96 GLY A 110 -1 O GLU A 104 N ILE A 85 SHEET 4 AA213 VAL A 40 PRO A 43 1 N VAL A 42 O MET A 105 SHEET 5 AA213 GLY A 122 GLY A 125 -1 O VAL A 123 N TRP A 41 SHEET 6 AA213 GLN A 27 HIS A 34 1 N LEU A 32 O PHE A 124 SHEET 7 AA213 VAL A 14 LEU A 22 -1 N LEU A 22 O GLN A 27 SHEET 8 AA213 SER A 79P GLU A 86P-1 N ASN A 84P O SER A 16 SHEET 9 AA213 LYS A 165 ILE A 170 -1 O LEU A 168 N VAL A 81P SHEET 10 AA213 VAL A 153 TYR A 157 -1 N TYR A 157 O TYR A 167 SHEET 11 AA213 TYR A 309 ASP A 314 -1 O TYR A 313 N TYR A 154 SHEET 12 AA213 THR A 319 ALA A 325 -1 O THR A 319 N ASP A 314 SHEET 13 AA213 PHE A 178 LYS A 186 -1 N ASP A 179 O LEU A 324 SHEET 1 AA3 7 VAL A 265 LEU A 268 0 SHEET 2 AA3 7 LEU A 257 ARG A 260 -1 N LEU A 257 O LEU A 268 SHEET 3 AA3 7 GLN A 194 PHE A 201 -1 N ASP A 198 O ARG A 260 SHEET 4 AA3 7 VAL A 204 LEU A 213 -1 O VAL A 204 N PHE A 201 SHEET 5 AA3 7 THR A 298 LEU A 301 1 O LEU A 301 N ILE A 212 SHEET 6 AA3 7 ILE A 220 VAL A 222 -1 N THR A 221 O VAL A 300 SHEET 7 AA3 7 ILE A 289 PRO A 291 1 O VAL A 290 N ILE A 220 SHEET 1 AA4 4 PHE A 237 LYS A 238 0 SHEET 2 AA4 4 TYR A 245 THR A 248 -1 O VAL A 246 N PHE A 237 SHEET 3 AA4 4 LEU A 284 LEU A 287 -1 O LEU A 287 N TYR A 245 SHEET 4 AA4 4 LEU A 274 PRO A 276 -1 N GLU A 275 O MET A 286 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.08 SSBOND 2 CYS A 249 CYS A 285 1555 1555 2.04 CISPEP 1 LYS A 118P LYS A 119P 0 -14.55 CISPEP 2 GLU A 2 PHE A 3 0 3.30 CISPEP 3 ASN A 5 VAL A 6 0 -26.06 CISPEP 4 GLU A 112 PRO A 113 0 5.98 SITE 1 AC1 5 ASN A 188 GLN A 194 ASN A 210 HOH A 515 SITE 2 AC1 5 HOH A 638 SITE 1 AC2 11 ASP A 69 THR A 71 PHE A 86 LYS A 101 SITE 2 AC2 11 LYS A 102P SER A 132 ILE A 133 GLY A 134 SITE 3 AC2 11 ASN A 279 HOH A 534 HOH A 537 SITE 1 AC3 4 GLU A 19 THR A 80P VAL A 81P GLY A 82P SITE 1 AC4 7 SER A 88P VAL A 219 SER A 243 ASN A 288 SITE 2 AC4 7 HOH A 542 HOH A 602 HOH A 647 SITE 1 AC5 7 GLU A 2 PHE A 3 ASP A 4 VAL A 6 SITE 2 AC5 7 THR A 224 PRO A 291 ASP A 293 SITE 1 AC6 5 TYR A 184 ASP A 314 ASN A 317 THR A 319 SITE 2 AC6 5 HOH A 504 SITE 1 AC7 7 VAL A 265 THR A 267 GLU A 269 LYS A 308 SITE 2 AC7 7 TYR A 309 HOH A 510 HOH A 531 SITE 1 AC8 5 VAL A 14 GLU A 86P PHE A 114 SER A 118 SITE 2 AC8 5 ASP A 119 SITE 1 AC9 3 HIS A 99P SER A 243 HOH A 557 CRYST1 122.900 69.300 73.400 90.00 126.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008137 0.000000 0.005933 0.00000 SCALE2 0.000000 0.014430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016862 0.00000