HEADER HYDROLASE 31-AUG-19 6KUD TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM HISTO-ASPARTIC PROTEASE TITLE 2 (HAP) ZYMOGEN (FORM 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTO-ASPARTIC PROTEASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: HAP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS HISTO-ASPARTIC PROTEASE, HAP, PLASMEPSIN, PROPLASMEPSIN, ZYMOGEN, KEYWDS 2 ASPARTIC PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.RATHORE,V.MISHRA,P.BHAUMIK REVDAT 2 03-FEB-21 6KUD 1 JRNL REVDAT 1 27-MAY-20 6KUD 0 JRNL AUTH I.RATHORE,V.MISHRA,C.PATEL,H.XIAO,A.GUSTCHINA,A.WLODAWER, JRNL AUTH 2 R.Y.YADA,P.BHAUMIK JRNL TITL ACTIVATION MECHANISM OF PLASMEPSINS, PEPSIN-LIKE ASPARTIC JRNL TITL 2 PROTEASES FROM PLASMODIUM, FOLLOWS A UNIQUE TRANS-ACTIVATION JRNL TITL 3 PATHWAY. JRNL REF FEBS J. V. 288 678 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32385863 JRNL DOI 10.1111/FEBS.15363 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 10474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 552 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.42000 REMARK 3 B22 (A**2) : 2.46000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.400 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.344 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3071 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2904 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4153 ; 1.719 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6735 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 7.996 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;38.558 ;25.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;19.827 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3401 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 119P REMARK 3 ORIGIN FOR THE GROUP (A): 46.5540 -5.8380 5.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.4111 REMARK 3 T33: 0.1303 T12: -0.0149 REMARK 3 T13: 0.0639 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 6.4814 L22: 0.1804 REMARK 3 L33: 0.5980 L12: -1.0463 REMARK 3 L13: -0.7369 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.0982 S13: -0.2443 REMARK 3 S21: 0.0298 S22: -0.0253 S23: 0.0724 REMARK 3 S31: -0.0657 S32: 0.1260 S33: -0.0275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120P A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4700 8.9410 -0.5070 REMARK 3 T TENSOR REMARK 3 T11: 1.0423 T22: 0.8486 REMARK 3 T33: 0.3772 T12: -0.1470 REMARK 3 T13: 0.3166 T23: 0.2643 REMARK 3 L TENSOR REMARK 3 L11: 9.4255 L22: 11.7478 REMARK 3 L33: 1.3993 L12: 6.9112 REMARK 3 L13: 0.7199 L23: 3.3761 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.3896 S13: 1.0581 REMARK 3 S21: -1.2446 S22: -0.0898 S23: 0.1462 REMARK 3 S31: -0.1917 S32: -0.2497 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5250 4.8250 4.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.3425 REMARK 3 T33: 0.0743 T12: 0.0749 REMARK 3 T13: -0.0544 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.4714 L22: 0.7096 REMARK 3 L33: 2.6104 L12: 0.6472 REMARK 3 L13: 1.5300 L23: 0.0023 REMARK 3 S TENSOR REMARK 3 S11: -0.1864 S12: -0.0244 S13: 0.1492 REMARK 3 S21: -0.1892 S22: 0.0208 S23: 0.1833 REMARK 3 S31: -0.2187 S32: -0.1642 S33: 0.1656 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8190 4.7040 15.8450 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.4040 REMARK 3 T33: 0.0091 T12: -0.0132 REMARK 3 T13: -0.0096 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.6124 L22: 1.0083 REMARK 3 L33: 1.4929 L12: -0.9152 REMARK 3 L13: -0.4408 L23: 0.8213 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.0717 S13: -0.0344 REMARK 3 S21: -0.1971 S22: 0.0467 S23: -0.0317 REMARK 3 S31: -0.2693 S32: 0.0468 S33: -0.0823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6KUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM CITRATE TRIBASIC REMARK 280 TETRAHYDRATE, 20% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.09500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.09500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 122.19000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -4 REMARK 465 ILE A -3 REMARK 465 SER A -2 REMARK 465 TYR A 121P REMARK 465 LEU A 122P REMARK 465 GLY A 123P REMARK 465 SER A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 115P N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 117P -77.63 -81.81 REMARK 500 LYS A 118P -41.46 66.94 REMARK 500 VAL A 6 -131.62 52.46 REMARK 500 LYS A 46 43.64 -87.08 REMARK 500 ASP A 69 -57.25 -130.86 REMARK 500 SER A 135 57.45 35.56 REMARK 500 SER A 233 24.67 47.29 REMARK 500 ALA A 283 28.77 43.16 REMARK 500 ASN A 288 37.93 -81.98 REMARK 500 LEU A 294 -143.64 -113.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 93 GLY A 94 -57.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 DBREF 6KUD A 77P 328 UNP Q9Y006 Q9Y006_PLAFA 77 451 SEQADV 6KUD ALA A -4 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUD ILE A -3 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUD SER A -2 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUD ASP A -1 UNP Q9Y006 EXPRESSION TAG SEQADV 6KUD PRO A 0 UNP Q9Y006 EXPRESSION TAG SEQRES 1 A 380 ALA ILE SER ASP PRO LYS TYR SER THR VAL GLY PHE ASN SEQRES 2 A 380 ILE GLU ASN SER TYR ASP ARG LEU MET LYS THR ILE LYS SEQRES 3 A 380 GLU HIS LYS LEU LYS ASN TYR ILE LYS GLU SER VAL LYS SEQRES 4 A 380 LEU PHE ASN LYS GLY LEU THR LYS LYS SER TYR LEU GLY SEQRES 5 A 380 SER GLU PHE ASP ASN VAL GLU LEU LYS ASP LEU ALA ASN SEQRES 6 A 380 VAL LEU SER PHE GLY GLU ALA LYS LEU GLY ASP ASN GLY SEQRES 7 A 380 GLN LYS PHE ASN PHE LEU PHE HIS THR ALA SER SER ASN SEQRES 8 A 380 VAL TRP VAL PRO SER ILE LYS CYS THR SER GLU SER CYS SEQRES 9 A 380 GLU SER LYS ASN HIS TYR ASP SER SER LYS SER LYS THR SEQRES 10 A 380 TYR GLU LYS ASP ASP THR PRO VAL LYS LEU THR SER LYS SEQRES 11 A 380 ALA GLY THR ILE SER GLY ILE PHE SER LYS ASP LEU VAL SEQRES 12 A 380 THR ILE GLY LYS LEU SER VAL PRO TYR LYS PHE ILE GLU SEQRES 13 A 380 MET THR GLU ILE VAL GLY PHE GLU PRO PHE TYR SER GLU SEQRES 14 A 380 SER ASP VAL ASP GLY VAL PHE GLY LEU GLY TRP LYS ASP SEQRES 15 A 380 LEU SER ILE GLY SER ILE ASP PRO TYR ILE VAL GLU LEU SEQRES 16 A 380 LYS THR GLN ASN LYS ILE GLU GLN ALA VAL TYR SER ILE SEQRES 17 A 380 TYR LEU PRO PRO GLU ASN LYS ASN LYS GLY TYR LEU THR SEQRES 18 A 380 ILE GLY GLY ILE GLU GLU ARG PHE PHE ASP GLY PRO LEU SEQRES 19 A 380 ASN TYR GLU LYS LEU ASN HIS ASP LEU MET TRP GLN VAL SEQRES 20 A 380 ASP LEU ASP VAL HIS PHE GLY ASN VAL SER SER LYS LYS SEQRES 21 A 380 ALA ASN VAL ILE LEU ASP SER ALA THR SER VAL ILE THR SEQRES 22 A 380 VAL PRO THR GLU PHE PHE ASN GLN PHE VAL GLU SER ALA SEQRES 23 A 380 SER VAL PHE LYS VAL PRO PHE LEU SER LEU TYR VAL THR SEQRES 24 A 380 THR CYS GLY ASN THR LYS LEU PRO THR LEU GLU TYR ARG SEQRES 25 A 380 SER PRO ASN LYS VAL TYR THR LEU GLU PRO LYS GLN TYR SEQRES 26 A 380 LEU GLU PRO LEU GLU ASN ILE PHE SER ALA LEU CYS MET SEQRES 27 A 380 LEU ASN ILE VAL PRO ILE ASP LEU GLU LYS ASN THR PHE SEQRES 28 A 380 VAL LEU GLY ASP PRO PHE MET ARG LYS TYR PHE THR VAL SEQRES 29 A 380 TYR ASP TYR ASP ASN HIS THR VAL GLY PHE ALA LEU ALA SEQRES 30 A 380 LYS ASN LEU HET GOL A 401 6 HET GOL A 402 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *27(H2 O) HELIX 1 AA1 ASN A 87P HIS A 99P 1 13 HELIX 2 AA2 LEU A 101P LYS A 114P 1 14 HELIX 3 AA3 GLU A 50 LYS A 55 5 6 HELIX 4 AA4 ASP A 59 SER A 63 5 5 HELIX 5 AA5 PRO A 113 SER A 118 1 6 HELIX 6 AA6 PRO A 138 GLN A 146 1 9 HELIX 7 AA7 GLU A 174 ARG A 176 5 3 HELIX 8 AA8 PRO A 223 GLU A 232 1 10 HELIX 9 AA9 GLU A 269 GLN A 272 5 4 HELIX 10 AB1 GLY A 302 LYS A 308 1 7 SHEET 1 AA1 4 GLN A 27 LYS A 28 0 SHEET 2 AA1 4 LYS A 21 LEU A 22 -1 N LEU A 22 O GLN A 27 SHEET 3 AA1 4 GLY A 80 ILE A 93 -1 O THR A 92 N LYS A 21 SHEET 4 AA1 4 GLU A 67 THR A 76 -1 N LEU A 75 O ILE A 82 SHEET 1 AA214 GLN A 27 LYS A 28 0 SHEET 2 AA214 LYS A 21 LEU A 22 -1 N LEU A 22 O GLN A 27 SHEET 3 AA214 GLY A 80 ILE A 93 -1 O THR A 92 N LYS A 21 SHEET 4 AA214 LEU A 96 GLY A 110 -1 O LEU A 96 N ILE A 93 SHEET 5 AA214 VAL A 40 PRO A 43 1 N VAL A 42 O MET A 105 SHEET 6 AA214 GLY A 122 GLY A 125 -1 O VAL A 123 N TRP A 41 SHEET 7 AA214 PHE A 31 HIS A 34 1 N LEU A 32 O PHE A 124 SHEET 8 AA214 VAL A 14 PHE A 17 -1 N LEU A 15 O PHE A 33 SHEET 9 AA214 SER A 79P GLU A 86P-1 N ASN A 84P O SER A 16 SHEET 10 AA214 LYS A 165 ILE A 170 -1 O LEU A 168 N VAL A 81P SHEET 11 AA214 VAL A 153 TYR A 157 -1 N TYR A 157 O TYR A 167 SHEET 12 AA214 TYR A 309 ASP A 314 -1 O TYR A 313 N TYR A 154 SHEET 13 AA214 THR A 319 ALA A 325 -1 O ALA A 323 N PHE A 310 SHEET 14 AA214 PHE A 178 LYS A 186 -1 N GLU A 185 O VAL A 320 SHEET 1 AA3 5 VAL A 265 LEU A 268 0 SHEET 2 AA3 5 LEU A 257 ARG A 260 -1 N LEU A 257 O LEU A 268 SHEET 3 AA3 5 GLN A 194 PHE A 201 -1 N ASP A 198 O ARG A 260 SHEET 4 AA3 5 VAL A 204 LEU A 213 -1 O VAL A 204 N PHE A 201 SHEET 5 AA3 5 THR A 298 LEU A 301 1 O PHE A 299 N ASN A 210 SHEET 1 AA4 2 ILE A 220 VAL A 222 0 SHEET 2 AA4 2 ILE A 289 PRO A 291 1 O VAL A 290 N ILE A 220 SHEET 1 AA5 4 PHE A 237 LYS A 238 0 SHEET 2 AA5 4 TYR A 245 THR A 248 -1 O VAL A 246 N PHE A 237 SHEET 3 AA5 4 LEU A 284 LEU A 287 -1 O CYS A 285 N THR A 247 SHEET 4 AA5 4 LEU A 274 PRO A 276 -1 N GLU A 275 O MET A 286 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.08 SSBOND 2 CYS A 249 CYS A 285 1555 1555 2.10 CISPEP 1 LYS A 114P GLY A 115P 0 -7.05 CISPEP 2 VAL A 6 GLU A 7 0 -2.73 CISPEP 3 GLU A 112 PRO A 113 0 2.11 SITE 1 AC1 6 ASP A 69 THR A 71 PHE A 86 LYS A 101 SITE 2 AC1 6 LYS A 102P ILE A 136 SITE 1 AC2 2 ASN A 188 ASP A 190 CRYST1 122.190 69.910 73.260 90.00 125.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008184 0.000000 0.005884 0.00000 SCALE2 0.000000 0.014304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016811 0.00000