HEADER BIOSYNTHETIC PROTEIN 03-SEP-19 6KV9 TITLE MOEE5 IN COMPLEX WITH UDP-GLUCURONIC ACID AND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOEE5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VIRIDOSPORUS ATCC 14672; SOURCE 3 ORGANISM_TAXID: 566461; SOURCE 4 GENE: MOEE5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SUBSTRATE, COMPLEX, ANTIBIOTIC, EPIMERASE, GALACTURONIC ACID, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.-P.KO,W.LIU,H.SUN,W.LIU,C.-C.CHEN,R.-T.GUO REVDAT 3 22-NOV-23 6KV9 1 REMARK REVDAT 2 08-JAN-20 6KV9 1 JRNL REVDAT 1 13-NOV-19 6KV9 0 JRNL AUTH H.SUN,T.P.KO,W.LIU,W.LIU,Y.ZHENG,C.C.CHEN,R.T.GUO JRNL TITL STRUCTURE OF AN ANTIBIOTIC-SYNTHESIZING UDP-GLUCURONATE JRNL TITL 2 4-EPIMERASE MOEE5 IN COMPLEX WITH SUBSTRATE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 521 31 2020 JRNL REFN ESSN 1090-2104 JRNL PMID 31653344 JRNL DOI 10.1016/J.BBRC.2019.10.035 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 60321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.320 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.8000 - 3.5600 0.99 4512 154 0.1506 0.1634 REMARK 3 2 3.5600 - 2.8300 1.00 4281 148 0.1478 0.1977 REMARK 3 3 2.8300 - 2.4700 1.00 4231 144 0.1602 0.1894 REMARK 3 4 2.4700 - 2.2500 1.00 4216 145 0.1573 0.1619 REMARK 3 5 2.2500 - 2.0800 1.00 4197 145 0.1610 0.1886 REMARK 3 6 2.0800 - 1.9600 1.00 4157 142 0.1600 0.1851 REMARK 3 7 1.9600 - 1.8600 1.00 4125 142 0.1569 0.1920 REMARK 3 8 1.8600 - 1.7800 1.00 4150 141 0.1658 0.2001 REMARK 3 9 1.7800 - 1.7100 1.00 4131 142 0.1623 0.1829 REMARK 3 10 1.7100 - 1.6500 1.00 4131 141 0.1734 0.2055 REMARK 3 11 1.6500 - 1.6000 1.00 4090 141 0.1770 0.1928 REMARK 3 12 1.6000 - 1.5600 1.00 4093 141 0.1816 0.2579 REMARK 3 13 1.5600 - 1.5200 0.99 4056 138 0.2006 0.2431 REMARK 3 14 1.5200 - 1.4800 0.96 3951 136 0.2234 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.137 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2439 REMARK 3 ANGLE : 1.538 3324 REMARK 3 CHIRALITY : 0.112 390 REMARK 3 PLANARITY : 0.010 426 REMARK 3 DIHEDRAL : 23.467 892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 4ZRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-CITRATE, BIS-TRIS PROPANE, PEG REMARK 280 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.19350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.57950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.57950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.09675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.57950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.57950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.29025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.57950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.57950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.09675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.57950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.57950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 150.29025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 100.19350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 977 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 HIS A 6 REMARK 465 GLY A 7 REMARK 465 THR A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 GLU A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 SER A 55 REMARK 465 PRO A 56 REMARK 465 PRO A 57 REMARK 465 PHE A 58 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 465 GLU A 324 REMARK 465 GLN A 325 REMARK 465 ASP A 326 REMARK 465 THR A 327 REMARK 465 VAL A 328 REMARK 465 PRO A 329 REMARK 465 VAL A 330 REMARK 465 GLY A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 VAL A 335 REMARK 465 SER A 336 REMARK 465 VAL A 337 REMARK 465 PRO A 338 REMARK 465 ARG A 339 REMARK 465 LEU A 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 787 O HOH A 912 1.85 REMARK 500 O HOH A 764 O HOH A 768 1.86 REMARK 500 O HOH A 729 O HOH A 923 1.87 REMARK 500 O HOH A 976 O HOH A 985 1.88 REMARK 500 O HOH A 875 O HOH A 923 1.90 REMARK 500 O HOH A 739 O HOH A 871 1.93 REMARK 500 O HOH A 629 O HOH A 915 1.98 REMARK 500 O HOH A 709 O HOH A 744 1.98 REMARK 500 O HOH A 811 O HOH A 912 2.00 REMARK 500 O HOH A 694 O HOH A 767 2.02 REMARK 500 O HOH A 941 O HOH A 976 2.02 REMARK 500 O HOH A 856 O HOH A 916 2.03 REMARK 500 O HOH A 820 O HOH A 900 2.03 REMARK 500 O HOH A 632 O HOH A 935 2.03 REMARK 500 O HOH A 820 O HOH A 935 2.07 REMARK 500 O HOH A 601 O HOH A 734 2.08 REMARK 500 O HOH A 615 O HOH A 820 2.08 REMARK 500 O HOH A 662 O HOH A 725 2.08 REMARK 500 O HOH A 782 O HOH A 880 2.10 REMARK 500 O HOH A 886 O HOH A 941 2.11 REMARK 500 O HOH A 886 O HOH A 915 2.12 REMARK 500 O HOH A 872 O HOH A 923 2.12 REMARK 500 O HOH A 887 O HOH A 895 2.12 REMARK 500 O HOH A 743 O HOH A 938 2.13 REMARK 500 O HOH A 802 O HOH A 853 2.14 REMARK 500 O HOH A 804 O HOH A 928 2.14 REMARK 500 O HOH A 874 O HOH A 914 2.15 REMARK 500 OE2 GLU A 211 O HOH A 601 2.16 REMARK 500 OD2 ASP A 240 O HOH A 602 2.17 REMARK 500 O HOH A 604 O HOH A 876 2.17 REMARK 500 O HOH A 729 O HOH A 875 2.18 REMARK 500 O HOH A 915 O HOH A 941 2.18 REMARK 500 O HOH A 711 O HOH A 880 2.19 REMARK 500 O HOH A 850 O HOH A 953 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 744 O HOH A 861 7555 1.82 REMARK 500 O HOH A 620 O HOH A 869 7555 1.82 REMARK 500 O HOH A 614 O HOH A 616 7455 2.06 REMARK 500 O HOH A 603 O HOH A 819 5545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 130 -163.40 -105.36 REMARK 500 ARG A 149 58.51 -142.79 REMARK 500 GLU A 175 62.58 -113.39 REMARK 500 THR A 185 88.05 16.55 REMARK 500 ALA A 236 -16.13 79.17 REMARK 500 SER A 237 -24.85 -141.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 987 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 988 DISTANCE = 6.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UGA A 402 DBREF 6KV9 A 1 340 UNP A0A003 A0A003_STRVD 1 340 SEQADV 6KV9 GLY A -5 UNP A0A003 EXPRESSION TAG SEQADV 6KV9 ALA A -4 UNP A0A003 EXPRESSION TAG SEQADV 6KV9 GLY A -3 UNP A0A003 EXPRESSION TAG SEQADV 6KV9 ALA A -2 UNP A0A003 EXPRESSION TAG SEQADV 6KV9 GLY A -1 UNP A0A003 EXPRESSION TAG SEQADV 6KV9 ALA A 0 UNP A0A003 EXPRESSION TAG SEQRES 1 A 346 GLY ALA GLY ALA GLY ALA MET SER SER ASP THR HIS GLY SEQRES 2 A 346 THR ASP LEU ALA ASP GLY ASP VAL LEU VAL THR GLY ALA SEQRES 3 A 346 ALA GLY PHE ILE GLY SER HIS LEU VAL THR GLU LEU ARG SEQRES 4 A 346 ASN SER GLY ARG ASN VAL VAL ALA VAL ASP ARG ARG PRO SEQRES 5 A 346 LEU PRO ASP ASP LEU GLU SER THR SER PRO PRO PHE THR SEQRES 6 A 346 GLY SER LEU ARG GLU ILE ARG GLY ASP LEU ASN SER LEU SEQRES 7 A 346 ASN LEU VAL ASP CYS LEU LYS ASN ILE SER THR VAL PHE SEQRES 8 A 346 HIS LEU ALA ALA LEU PRO GLY VAL ARG PRO SER TRP THR SEQRES 9 A 346 GLN PHE PRO GLU TYR LEU ARG CYS ASN VAL LEU ALA THR SEQRES 10 A 346 GLN ARG LEU MET GLU ALA CYS VAL GLN ALA GLY VAL GLU SEQRES 11 A 346 ARG VAL VAL VAL ALA SER SER SER SER VAL TYR GLY GLY SEQRES 12 A 346 ALA ASP GLY VAL MET SER GLU ASP ASP LEU PRO ARG PRO SEQRES 13 A 346 LEU SER PRO TYR GLY VAL THR LYS LEU ALA ALA GLU ARG SEQRES 14 A 346 LEU ALA LEU ALA PHE ALA ALA ARG GLY ASP ALA GLU LEU SEQRES 15 A 346 SER VAL GLY ALA LEU ARG PHE PHE THR VAL TYR GLY PRO SEQRES 16 A 346 GLY GLN ARG PRO ASP MET PHE ILE SER ARG LEU ILE ARG SEQRES 17 A 346 ALA THR LEU ARG GLY GLU PRO VAL GLU ILE TYR GLY ASP SEQRES 18 A 346 GLY THR GLN LEU ARG ASP PHE THR HIS VAL SER ASP VAL SEQRES 19 A 346 VAL ARG ALA LEU MET LEU THR ALA SER VAL ARG ASP ARG SEQRES 20 A 346 GLY SER ALA VAL LEU ASN ILE GLY THR GLY SER ALA VAL SEQRES 21 A 346 SER VAL ASN GLU VAL VAL SER MET THR ALA GLU LEU THR SEQRES 22 A 346 GLY LEU ARG PRO CYS THR ALA TYR GLY SER ALA ARG ILE SEQRES 23 A 346 GLY ASP VAL ARG SER THR THR ALA ASP VAL ARG GLN ALA SEQRES 24 A 346 GLN SER VAL LEU GLY PHE THR ALA ARG THR GLY LEU ARG SEQRES 25 A 346 GLU GLY LEU ALA THR GLN ILE GLU TRP THR ARG ARG SER SEQRES 26 A 346 LEU SER GLY ALA GLU GLN ASP THR VAL PRO VAL GLY GLY SEQRES 27 A 346 SER SER VAL SER VAL PRO ARG LEU HET NAD A 401 44 HET UGA A 402 37 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UGA URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID HETSYN UGA UDP-GLUCURONIC ACID FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 UGA C15 H22 N2 O18 P2 FORMUL 4 HOH *388(H2 O) HELIX 1 AA1 GLY A 22 SER A 35 1 14 HELIX 2 AA2 ASN A 73 LEU A 78 1 6 HELIX 3 AA3 VAL A 93 THR A 98 5 6 HELIX 4 AA4 GLN A 99 VAL A 108 1 10 HELIX 5 AA5 VAL A 108 GLY A 122 1 15 HELIX 6 AA6 SER A 133 GLY A 136 5 4 HELIX 7 AA7 SER A 152 ARG A 171 1 20 HELIX 8 AA8 MET A 195 ARG A 206 1 12 HELIX 9 AA9 VAL A 225 ALA A 236 1 12 HELIX 10 AB1 VAL A 256 GLY A 268 1 13 HELIX 11 AB2 VAL A 290 GLY A 298 1 9 HELIX 12 AB3 GLY A 304 LEU A 320 1 17 SHEET 1 AA1 7 LEU A 62 ARG A 66 0 SHEET 2 AA1 7 VAL A 39 ASP A 43 1 N ALA A 41 O ILE A 65 SHEET 3 AA1 7 ASP A 14 THR A 18 1 N VAL A 15 O VAL A 40 SHEET 4 AA1 7 ILE A 81 HIS A 86 1 O PHE A 85 N LEU A 16 SHEET 5 AA1 7 ARG A 125 SER A 131 1 O VAL A 127 N HIS A 86 SHEET 6 AA1 7 SER A 177 PHE A 183 1 O LEU A 181 N SER A 130 SHEET 7 AA1 7 ALA A 244 ILE A 248 1 O ALA A 244 N ALA A 180 SHEET 1 AA2 2 VAL A 186 TYR A 187 0 SHEET 2 AA2 2 THR A 223 HIS A 224 1 O THR A 223 N TYR A 187 SHEET 1 AA3 2 VAL A 210 TYR A 213 0 SHEET 2 AA3 2 THR A 273 GLY A 276 1 O GLY A 276 N ILE A 212 SHEET 1 AA4 2 LEU A 219 ARG A 220 0 SHEET 2 AA4 2 VAL A 254 SER A 255 -1 O VAL A 254 N ARG A 220 SITE 1 AC1 30 GLY A 19 GLY A 22 PHE A 23 ILE A 24 SITE 2 AC1 30 ASP A 43 ARG A 44 ARG A 45 GLY A 67 SITE 3 AC1 30 ASP A 68 LEU A 69 LEU A 87 ALA A 88 SITE 4 AC1 30 ALA A 89 PRO A 91 ALA A 129 SER A 130 SITE 5 AC1 30 SER A 131 TYR A 154 LYS A 158 PHE A 183 SITE 6 AC1 30 THR A 185 VAL A 186 ARG A 192 MET A 195 SITE 7 AC1 30 UGA A 402 HOH A 623 HOH A 660 HOH A 704 SITE 8 AC1 30 HOH A 715 HOH A 775 SITE 1 AC2 27 PRO A 91 ARG A 94 SER A 131 SER A 132 SITE 2 AC2 27 SER A 133 TYR A 154 PHE A 183 THR A 185 SITE 3 AC2 27 ARG A 192 MET A 195 PHE A 196 ARG A 199 SITE 4 AC2 27 GLU A 211 ILE A 212 TYR A 213 GLN A 218 SITE 5 AC2 27 ARG A 220 VAL A 256 ASP A 282 NAD A 401 SITE 6 AC2 27 HOH A 673 HOH A 713 HOH A 727 HOH A 730 SITE 7 AC2 27 HOH A 751 HOH A 770 HOH A 777 CRYST1 59.159 59.159 200.387 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004990 0.00000