HEADER CIRCADIAN CLOCK PROTEIN 10-SEP-19 6KX6 TITLE CRYSTAL STRUCTURE OF MOUSE CRYPTOCHROME 1 IN COMPLEX WITH KL101 TITLE 2 COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRY1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CIRCADIAN CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MILLER,Y.AIKAWA,T.HIROTA REVDAT 4 22-NOV-23 6KX6 1 REMARK REVDAT 3 03-JUN-20 6KX6 1 JRNL REVDAT 2 15-APR-20 6KX6 1 JRNL REVDAT 1 01-APR-20 6KX6 0 JRNL AUTH S.MILLER,Y.L.SON,Y.AIKAWA,E.MAKINO,Y.NAGAI,A.SRIVASTAVA, JRNL AUTH 2 T.OSHIMA,A.SUGIYAMA,A.HARA,K.ABE,K.HIRATA,S.OISHI, JRNL AUTH 3 S.HAGIHARA,A.SATO,F.TAMA,K.ITAMI,S.A.KAY,M.HATORI,T.HIROTA JRNL TITL ISOFORM-SELECTIVE REGULATION OF MAMMALIAN CRYPTOCHROMES. JRNL REF NAT.CHEM.BIOL. V. 16 676 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32231341 JRNL DOI 10.1038/S41589-020-0505-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 81631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3400 - 6.1400 0.98 2735 158 0.0000 0.2232 REMARK 3 2 6.1400 - 4.8700 0.99 2709 136 0.0000 0.2531 REMARK 3 3 4.8700 - 4.2600 0.98 2701 145 0.1872 0.2211 REMARK 3 4 4.2600 - 3.8700 0.99 2725 130 0.1792 0.1883 REMARK 3 5 3.8700 - 3.5900 0.98 2703 139 0.1851 0.2211 REMARK 3 6 3.5900 - 3.3800 0.98 2695 129 0.0000 0.2512 REMARK 3 7 3.3800 - 3.2100 0.98 2678 145 0.0000 0.2384 REMARK 3 8 3.2100 - 3.0700 0.98 2703 140 0.0000 0.2513 REMARK 3 9 3.0700 - 2.9500 0.98 2653 145 0.0000 0.2590 REMARK 3 10 2.9500 - 2.8500 0.98 2662 160 0.0000 0.2353 REMARK 3 11 2.8500 - 2.7600 0.98 2701 130 0.0000 0.2660 REMARK 3 12 2.7600 - 2.6800 0.98 2687 143 0.0000 0.2670 REMARK 3 13 2.6800 - 2.6100 0.98 2662 137 0.0000 0.2748 REMARK 3 14 2.6100 - 2.5500 0.98 2650 145 0.0000 0.2304 REMARK 3 15 2.5500 - 2.4900 0.98 2674 139 0.0000 0.2557 REMARK 3 16 2.4900 - 2.4400 0.98 2698 138 0.0000 0.2609 REMARK 3 17 2.4400 - 2.3900 0.98 2622 152 0.0000 0.2439 REMARK 3 18 2.3900 - 2.3400 0.98 2711 136 0.0000 0.2434 REMARK 3 19 2.3400 - 2.3000 0.97 2651 141 0.0000 0.2695 REMARK 3 20 2.3000 - 2.2600 0.98 2649 140 0.0000 0.2629 REMARK 3 21 2.2600 - 2.2300 0.98 2660 143 0.0000 0.2796 REMARK 3 22 2.2300 - 2.1900 0.97 2643 140 0.0000 0.2261 REMARK 3 23 2.1900 - 2.1600 0.98 2671 138 0.0000 0.2751 REMARK 3 24 2.1600 - 2.1300 0.97 2631 138 0.0000 0.3018 REMARK 3 25 2.1300 - 2.1000 0.97 2630 161 0.0000 0.2690 REMARK 3 26 2.1000 - 2.0700 0.97 2674 138 0.0000 0.2982 REMARK 3 27 2.0700 - 2.0500 0.97 2658 135 0.0000 0.3088 REMARK 3 28 2.0500 - 2.0200 0.97 2587 143 0.0000 0.3220 REMARK 3 29 2.0200 - 2.0000 0.97 2706 138 0.0000 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.253 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.081 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7536 REMARK 3 ANGLE : 0.607 10275 REMARK 3 CHIRALITY : 0.042 1113 REMARK 3 PLANARITY : 0.004 1311 REMARK 3 DIHEDRAL : 8.690 6042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8797 6.8733 27.1056 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.0524 REMARK 3 T33: 0.0633 T12: -0.0349 REMARK 3 T13: 0.0088 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.0363 L22: 0.0520 REMARK 3 L33: 0.0578 L12: 0.0198 REMARK 3 L13: 0.0177 L23: -0.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0487 S13: -0.0345 REMARK 3 S21: -0.0080 S22: 0.0357 S23: 0.0094 REMARK 3 S31: -0.0050 S32: 0.0148 S33: 0.0650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1139 27.3738 33.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.0176 REMARK 3 T33: 0.1036 T12: -0.0408 REMARK 3 T13: 0.0161 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0241 L22: 0.0194 REMARK 3 L33: 0.0234 L12: 0.0205 REMARK 3 L13: 0.0005 L23: -0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.0010 S13: -0.0147 REMARK 3 S21: -0.0041 S22: 0.0155 S23: -0.0218 REMARK 3 S31: -0.0294 S32: 0.0350 S33: 0.0535 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3723 41.3698 4.3706 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0714 REMARK 3 T33: 0.0557 T12: -0.0390 REMARK 3 T13: -0.0007 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.0400 L22: 0.0645 REMARK 3 L33: 0.0155 L12: -0.0425 REMARK 3 L13: -0.0048 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: 0.0362 S13: -0.0082 REMARK 3 S21: 0.0110 S22: 0.0477 S23: -0.0176 REMARK 3 S31: -0.0195 S32: 0.0455 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6824 20.7246 -10.6170 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0477 REMARK 3 T33: 0.0375 T12: -0.0507 REMARK 3 T13: -0.0073 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.0461 L22: 0.0284 REMARK 3 L33: 0.0270 L12: 0.0132 REMARK 3 L13: 0.0131 L23: 0.0267 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.0323 S13: -0.0047 REMARK 3 S21: -0.0254 S22: -0.0074 S23: 0.0281 REMARK 3 S31: 0.0055 S32: -0.0302 S33: -0.0808 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 200 MM NH4CL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.35050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.35050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 TRP A 40 REMARK 465 PHE A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 TRP A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 ASN A 233 REMARK 465 PHE A 234 REMARK 465 GLU A 235 REMARK 465 ARG A 236 REMARK 465 PRO A 237 REMARK 465 ARG A 238 REMARK 465 MET A 239 REMARK 465 VAL A 276 REMARK 465 LYS A 277 REMARK 465 LYS A 278 REMARK 465 GLN A 408 REMARK 465 PHE A 409 REMARK 465 PHE A 410 REMARK 465 HIS A 411 REMARK 465 ARG A 493 REMARK 465 TYR A 494 REMARK 465 ARG A 495 REMARK 465 GLY A 496 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 PRO B 39 REMARK 465 TRP B 40 REMARK 465 PHE B 41 REMARK 465 ALA B 42 REMARK 465 GLY B 43 REMARK 465 SER B 44 REMARK 465 SER B 45 REMARK 465 TRP B 230 REMARK 465 VAL B 231 REMARK 465 ALA B 232 REMARK 465 ASN B 233 REMARK 465 PHE B 234 REMARK 465 GLU B 235 REMARK 465 ARG B 236 REMARK 465 PRO B 237 REMARK 465 ARG B 238 REMARK 465 MET B 239 REMARK 465 LYS B 277 REMARK 465 LYS B 278 REMARK 465 ASN B 279 REMARK 465 GLN B 407 REMARK 465 GLN B 408 REMARK 465 PHE B 409 REMARK 465 PHE B 410 REMARK 465 HIS B 411 REMARK 465 LEU B 491 REMARK 465 SER B 492 REMARK 465 ARG B 493 REMARK 465 TYR B 494 REMARK 465 ARG B 495 REMARK 465 GLY B 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 ASN A 46 CG OD1 ND2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 PHE A 105 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 MET A 165 CG SD CE REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ASN A 240 CG OD1 ND2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 ASN A 279 CG OD1 ND2 REMARK 470 SER A 280 OG REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 PHE A 406 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 407 CG CD OE1 NE2 REMARK 470 GLU A 452 CG CD OE1 OE2 REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 ASP B 38 CG OD1 OD2 REMARK 470 ASN B 46 CG OD1 ND2 REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 PHE B 105 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 LEU B 148 CG CD1 CD2 REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 MET B 165 CG SD CE REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ASP B 185 CG OD1 OD2 REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 ASN B 240 CG OD1 ND2 REMARK 470 ASN B 242 CG OD1 ND2 REMARK 470 ARG B 263 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 SER B 280 OG REMARK 470 GLN B 289 CG CD OE1 NE2 REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 LYS B 322 CG CD CE NZ REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 LYS B 379 CG CD CE NZ REMARK 470 ASP B 389 CG OD1 OD2 REMARK 470 PHE B 406 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 421 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 437 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 452 CG CD OE1 OE2 REMARK 470 GLU B 475 CG CD OE1 OE2 REMARK 470 ARG B 478 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -78.64 -132.33 REMARK 500 SER A 129 -1.33 -163.58 REMARK 500 MET A 309 -60.80 -90.59 REMARK 500 ASN A 323 84.03 -150.67 REMARK 500 THR A 366 -98.62 -102.76 REMARK 500 VAL A 464 -61.39 -127.33 REMARK 500 ARG B 10 -76.24 -134.52 REMARK 500 ASP B 17 59.58 37.01 REMARK 500 SER B 129 1.24 -164.19 REMARK 500 ASP B 185 43.31 -99.34 REMARK 500 MET B 309 -64.09 -94.05 REMARK 500 THR B 366 -102.75 -102.80 REMARK 500 PRO B 415 0.54 -69.09 REMARK 500 VAL B 464 -63.96 -127.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 831 DISTANCE = 7.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYU B 501 DBREF 6KX6 A 1 496 UNP P97784 CRY1_MOUSE 1 496 DBREF 6KX6 B 1 496 UNP P97784 CRY1_MOUSE 1 496 SEQADV 6KX6 GLY A -1 UNP P97784 EXPRESSION TAG SEQADV 6KX6 THR A 0 UNP P97784 EXPRESSION TAG SEQADV 6KX6 GLY B -1 UNP P97784 EXPRESSION TAG SEQADV 6KX6 THR B 0 UNP P97784 EXPRESSION TAG SEQRES 1 A 498 GLY THR MET GLY VAL ASN ALA VAL HIS TRP PHE ARG LYS SEQRES 2 A 498 GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU LYS GLU CYS SEQRES 3 A 498 ILE GLN GLY ALA ASP THR ILE ARG CYS VAL TYR ILE LEU SEQRES 4 A 498 ASP PRO TRP PHE ALA GLY SER SER ASN VAL GLY ILE ASN SEQRES 5 A 498 ARG TRP ARG PHE LEU LEU GLN CYS LEU GLU ASP LEU ASP SEQRES 6 A 498 ALA ASN LEU ARG LYS LEU ASN SER ARG LEU PHE VAL ILE SEQRES 7 A 498 ARG GLY GLN PRO ALA ASP VAL PHE PRO ARG LEU PHE LYS SEQRES 8 A 498 GLU TRP ASN ILE THR LYS LEU SER ILE GLU TYR ASP SER SEQRES 9 A 498 GLU PRO PHE GLY LYS GLU ARG ASP ALA ALA ILE LYS LYS SEQRES 10 A 498 LEU ALA THR GLU ALA GLY VAL GLU VAL ILE VAL ARG ILE SEQRES 11 A 498 SER HIS THR LEU TYR ASP LEU ASP LYS ILE ILE GLU LEU SEQRES 12 A 498 ASN GLY GLY GLN PRO PRO LEU THR TYR LYS ARG PHE GLN SEQRES 13 A 498 THR LEU VAL SER LYS MET GLU PRO LEU GLU MET PRO ALA SEQRES 14 A 498 ASP THR ILE THR SER ASP VAL ILE GLY LYS CYS MET THR SEQRES 15 A 498 PRO LEU SER ASP ASP HIS ASP GLU LYS TYR GLY VAL PRO SEQRES 16 A 498 SER LEU GLU GLU LEU GLY PHE ASP THR ASP GLY LEU SER SEQRES 17 A 498 SER ALA VAL TRP PRO GLY GLY GLU THR GLU ALA LEU THR SEQRES 18 A 498 ARG LEU GLU ARG HIS LEU GLU ARG LYS ALA TRP VAL ALA SEQRES 19 A 498 ASN PHE GLU ARG PRO ARG MET ASN ALA ASN SER LEU LEU SEQRES 20 A 498 ALA SER PRO THR GLY LEU SER PRO TYR LEU ARG PHE GLY SEQRES 21 A 498 CYS LEU SER CYS ARG LEU PHE TYR PHE LYS LEU THR ASP SEQRES 22 A 498 LEU TYR LYS LYS VAL LYS LYS ASN SER SER PRO PRO LEU SEQRES 23 A 498 SER LEU TYR GLY GLN LEU LEU TRP ARG GLU PHE PHE TYR SEQRES 24 A 498 THR ALA ALA THR ASN ASN PRO ARG PHE ASP LYS MET GLU SEQRES 25 A 498 GLY ASN PRO ILE CYS VAL GLN ILE PRO TRP ASP LYS ASN SEQRES 26 A 498 PRO GLU ALA LEU ALA LYS TRP ALA GLU GLY ARG THR GLY SEQRES 27 A 498 PHE PRO TRP ILE ASP ALA ILE MET THR GLN LEU ARG GLN SEQRES 28 A 498 GLU GLY TRP ILE HIS HIS LEU ALA ARG HIS ALA VAL ALA SEQRES 29 A 498 CYS PHE LEU THR ARG GLY ASP LEU TRP ILE SER TRP GLU SEQRES 30 A 498 GLU GLY MET LYS VAL PHE GLU GLU LEU LEU LEU ASP ALA SEQRES 31 A 498 ASP TRP SER ILE ASN ALA GLY SER TRP MET TRP LEU SER SEQRES 32 A 498 CYS SER SER PHE PHE GLN GLN PHE PHE HIS CYS TYR CYS SEQRES 33 A 498 PRO VAL GLY PHE GLY ARG ARG THR ASP PRO ASN GLY ASP SEQRES 34 A 498 TYR ILE ARG ARG TYR LEU PRO VAL LEU ARG GLY PHE PRO SEQRES 35 A 498 ALA LYS TYR ILE TYR ASP PRO TRP ASN ALA PRO GLU GLY SEQRES 36 A 498 ILE GLN LYS VAL ALA LYS CYS LEU ILE GLY VAL ASN TYR SEQRES 37 A 498 PRO LYS PRO MET VAL ASN HIS ALA GLU ALA SER ARG LEU SEQRES 38 A 498 ASN ILE GLU ARG MET LYS GLN ILE TYR GLN GLN LEU SER SEQRES 39 A 498 ARG TYR ARG GLY SEQRES 1 B 498 GLY THR MET GLY VAL ASN ALA VAL HIS TRP PHE ARG LYS SEQRES 2 B 498 GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU LYS GLU CYS SEQRES 3 B 498 ILE GLN GLY ALA ASP THR ILE ARG CYS VAL TYR ILE LEU SEQRES 4 B 498 ASP PRO TRP PHE ALA GLY SER SER ASN VAL GLY ILE ASN SEQRES 5 B 498 ARG TRP ARG PHE LEU LEU GLN CYS LEU GLU ASP LEU ASP SEQRES 6 B 498 ALA ASN LEU ARG LYS LEU ASN SER ARG LEU PHE VAL ILE SEQRES 7 B 498 ARG GLY GLN PRO ALA ASP VAL PHE PRO ARG LEU PHE LYS SEQRES 8 B 498 GLU TRP ASN ILE THR LYS LEU SER ILE GLU TYR ASP SER SEQRES 9 B 498 GLU PRO PHE GLY LYS GLU ARG ASP ALA ALA ILE LYS LYS SEQRES 10 B 498 LEU ALA THR GLU ALA GLY VAL GLU VAL ILE VAL ARG ILE SEQRES 11 B 498 SER HIS THR LEU TYR ASP LEU ASP LYS ILE ILE GLU LEU SEQRES 12 B 498 ASN GLY GLY GLN PRO PRO LEU THR TYR LYS ARG PHE GLN SEQRES 13 B 498 THR LEU VAL SER LYS MET GLU PRO LEU GLU MET PRO ALA SEQRES 14 B 498 ASP THR ILE THR SER ASP VAL ILE GLY LYS CYS MET THR SEQRES 15 B 498 PRO LEU SER ASP ASP HIS ASP GLU LYS TYR GLY VAL PRO SEQRES 16 B 498 SER LEU GLU GLU LEU GLY PHE ASP THR ASP GLY LEU SER SEQRES 17 B 498 SER ALA VAL TRP PRO GLY GLY GLU THR GLU ALA LEU THR SEQRES 18 B 498 ARG LEU GLU ARG HIS LEU GLU ARG LYS ALA TRP VAL ALA SEQRES 19 B 498 ASN PHE GLU ARG PRO ARG MET ASN ALA ASN SER LEU LEU SEQRES 20 B 498 ALA SER PRO THR GLY LEU SER PRO TYR LEU ARG PHE GLY SEQRES 21 B 498 CYS LEU SER CYS ARG LEU PHE TYR PHE LYS LEU THR ASP SEQRES 22 B 498 LEU TYR LYS LYS VAL LYS LYS ASN SER SER PRO PRO LEU SEQRES 23 B 498 SER LEU TYR GLY GLN LEU LEU TRP ARG GLU PHE PHE TYR SEQRES 24 B 498 THR ALA ALA THR ASN ASN PRO ARG PHE ASP LYS MET GLU SEQRES 25 B 498 GLY ASN PRO ILE CYS VAL GLN ILE PRO TRP ASP LYS ASN SEQRES 26 B 498 PRO GLU ALA LEU ALA LYS TRP ALA GLU GLY ARG THR GLY SEQRES 27 B 498 PHE PRO TRP ILE ASP ALA ILE MET THR GLN LEU ARG GLN SEQRES 28 B 498 GLU GLY TRP ILE HIS HIS LEU ALA ARG HIS ALA VAL ALA SEQRES 29 B 498 CYS PHE LEU THR ARG GLY ASP LEU TRP ILE SER TRP GLU SEQRES 30 B 498 GLU GLY MET LYS VAL PHE GLU GLU LEU LEU LEU ASP ALA SEQRES 31 B 498 ASP TRP SER ILE ASN ALA GLY SER TRP MET TRP LEU SER SEQRES 32 B 498 CYS SER SER PHE PHE GLN GLN PHE PHE HIS CYS TYR CYS SEQRES 33 B 498 PRO VAL GLY PHE GLY ARG ARG THR ASP PRO ASN GLY ASP SEQRES 34 B 498 TYR ILE ARG ARG TYR LEU PRO VAL LEU ARG GLY PHE PRO SEQRES 35 B 498 ALA LYS TYR ILE TYR ASP PRO TRP ASN ALA PRO GLU GLY SEQRES 36 B 498 ILE GLN LYS VAL ALA LYS CYS LEU ILE GLY VAL ASN TYR SEQRES 37 B 498 PRO LYS PRO MET VAL ASN HIS ALA GLU ALA SER ARG LEU SEQRES 38 B 498 ASN ILE GLU ARG MET LYS GLN ILE TYR GLN GLN LEU SER SEQRES 39 B 498 ARG TYR ARG GLY HET DYU A 501 27 HET DYU B 501 27 HETNAM DYU ~{N}-[2-(2,4-DIMETHYLPHENYL)-4,6-DIHYDROTHIENO[3,4- HETNAM 2 DYU C]PYRAZOL-3-YL]-3,4-DIMETHYL-BENZAMIDE FORMUL 3 DYU 2(C22 H23 N3 O S) FORMUL 5 HOH *425(H2 O) HELIX 1 AA1 ASN A 18 GLN A 26 1 9 HELIX 2 AA2 GLY A 48 LYS A 68 1 21 HELIX 3 AA3 GLN A 79 TRP A 91 1 13 HELIX 4 AA4 GLU A 103 GLY A 121 1 19 HELIX 5 AA5 ASP A 134 ASN A 142 1 9 HELIX 6 AA6 THR A 149 LYS A 159 1 11 HELIX 7 AA7 THR A 171 GLY A 176 1 6 HELIX 8 AA8 ASP A 185 GLY A 191 1 7 HELIX 9 AA9 LEU A 195 GLY A 199 5 5 HELIX 10 AB1 GLY A 213 ALA A 229 1 17 HELIX 11 AB2 ASN A 240 LEU A 245 5 6 HELIX 12 AB3 LEU A 251 PHE A 257 1 7 HELIX 13 AB4 SER A 261 LYS A 275 1 15 HELIX 14 AB5 PRO A 283 LEU A 286 5 4 HELIX 15 AB6 TYR A 287 ASN A 302 1 16 HELIX 16 AB7 ASN A 323 GLU A 332 1 10 HELIX 17 AB8 PHE A 337 GLY A 351 1 15 HELIX 18 AB9 HIS A 354 THR A 366 1 13 HELIX 19 AC1 SER A 373 LEU A 385 1 13 HELIX 20 AC2 ASP A 389 SER A 401 1 13 HELIX 21 AC3 VAL A 416 ASP A 423 1 8 HELIX 22 AC4 GLY A 426 LEU A 433 1 8 HELIX 23 AC5 PRO A 434 ARG A 437 5 4 HELIX 24 AC6 ASP A 446 ALA A 450 5 5 HELIX 25 AC7 PRO A 451 ALA A 458 1 8 HELIX 26 AC8 ASN A 472 SER A 492 1 21 HELIX 27 AC9 ASN B 18 GLN B 26 1 9 HELIX 28 AD1 GLY B 48 LYS B 68 1 21 HELIX 29 AD2 GLN B 79 TRP B 91 1 13 HELIX 30 AD3 GLU B 103 GLY B 121 1 19 HELIX 31 AD4 ASP B 134 ASN B 142 1 9 HELIX 32 AD5 THR B 149 MET B 160 1 12 HELIX 33 AD6 THR B 171 GLY B 176 1 6 HELIX 34 AD7 ASP B 185 GLY B 191 1 7 HELIX 35 AD8 LEU B 195 GLY B 199 5 5 HELIX 36 AD9 GLY B 213 ALA B 229 1 17 HELIX 37 AE1 ALA B 241 LEU B 245 5 5 HELIX 38 AE2 LEU B 251 PHE B 257 1 7 HELIX 39 AE3 SER B 261 VAL B 276 1 16 HELIX 40 AE4 PRO B 283 LEU B 286 5 4 HELIX 41 AE5 TYR B 287 THR B 301 1 15 HELIX 42 AE6 ASN B 323 GLY B 333 1 11 HELIX 43 AE7 PHE B 337 GLY B 351 1 15 HELIX 44 AE8 HIS B 354 THR B 366 1 13 HELIX 45 AE9 SER B 373 LEU B 385 1 13 HELIX 46 AF1 ASP B 389 SER B 401 1 13 HELIX 47 AF2 VAL B 416 ASP B 423 1 8 HELIX 48 AF3 GLY B 426 LEU B 433 1 8 HELIX 49 AF4 PRO B 434 ARG B 437 5 4 HELIX 50 AF5 ASP B 446 ALA B 450 5 5 HELIX 51 AF6 PRO B 451 ALA B 458 1 8 HELIX 52 AF7 ASN B 472 GLN B 490 1 19 SHEET 1 AA1 5 LEU A 73 ARG A 77 0 SHEET 2 AA1 5 THR A 30 LEU A 37 1 N CYS A 33 O PHE A 74 SHEET 3 AA1 5 ASN A 4 PHE A 9 1 N PHE A 9 O VAL A 34 SHEET 4 AA1 5 LYS A 95 GLU A 99 1 O SER A 97 N TRP A 8 SHEET 5 AA1 5 GLU A 123 ARG A 127 1 O ILE A 125 N LEU A 96 SHEET 1 AA2 5 LEU B 73 ARG B 77 0 SHEET 2 AA2 5 THR B 30 LEU B 37 1 N CYS B 33 O PHE B 74 SHEET 3 AA2 5 ASN B 4 PHE B 9 1 N PHE B 9 O VAL B 34 SHEET 4 AA2 5 LYS B 95 GLU B 99 1 O SER B 97 N TRP B 8 SHEET 5 AA2 5 GLU B 123 ARG B 127 1 O ILE B 125 N LEU B 96 SITE 1 AC1 11 TRP A 292 HIS A 355 ARG A 358 PHE A 381 SITE 2 AC1 11 ASP A 387 ILE A 392 SER A 396 TRP A 397 SITE 3 AC1 11 TRP A 399 LEU A 400 ASP B 203 SITE 1 AC2 13 ASP A 203 TRP B 292 HIS B 355 ARG B 358 SITE 2 AC2 13 PHE B 381 ASP B 387 ILE B 392 ASN B 393 SITE 3 AC2 13 SER B 396 TRP B 397 TRP B 399 LEU B 400 SITE 4 AC2 13 HOH B 634 CRYST1 130.701 143.211 76.820 90.00 118.71 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007651 0.000000 0.004191 0.00000 SCALE2 0.000000 0.006983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014842 0.00000