HEADER CIRCADIAN CLOCK PROTEIN 10-SEP-19 6KX7 TITLE CRYSTAL STRUCTURE OF MOUSE CRYPTOCHROME 1 IN COMPLEX WITH TH301 TITLE 2 COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRY1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CIRCADIAN CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MILLER,Y.AIKAWA,T.HIROTA REVDAT 4 22-NOV-23 6KX7 1 REMARK REVDAT 3 03-JUN-20 6KX7 1 JRNL REVDAT 2 15-APR-20 6KX7 1 JRNL REVDAT 1 01-APR-20 6KX7 0 JRNL AUTH S.MILLER,Y.L.SON,Y.AIKAWA,E.MAKINO,Y.NAGAI,A.SRIVASTAVA, JRNL AUTH 2 T.OSHIMA,A.SUGIYAMA,A.HARA,K.ABE,K.HIRATA,S.OISHI, JRNL AUTH 3 S.HAGIHARA,A.SATO,F.TAMA,K.ITAMI,S.A.KAY,M.HATORI,T.HIROTA JRNL TITL ISOFORM-SELECTIVE REGULATION OF MAMMALIAN CRYPTOCHROMES. JRNL REF NAT.CHEM.BIOL. V. 16 676 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32231341 JRNL DOI 10.1038/S41589-020-0505-1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 37410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8400 - 5.0600 0.96 2597 164 0.1908 0.2071 REMARK 3 2 5.0600 - 4.0200 0.99 2581 146 0.1704 0.2006 REMARK 3 3 4.0200 - 3.5100 0.99 2577 145 0.1796 0.1872 REMARK 3 4 3.5100 - 3.1900 1.00 2555 135 0.1989 0.2417 REMARK 3 5 3.1900 - 2.9600 0.99 2541 143 0.2186 0.2379 REMARK 3 6 2.9600 - 2.7900 0.99 2536 141 0.2087 0.2507 REMARK 3 7 2.7900 - 2.6500 0.99 2541 135 0.2109 0.2248 REMARK 3 8 2.6500 - 2.5300 0.99 2501 148 0.2184 0.2330 REMARK 3 9 2.5300 - 2.4300 0.99 2520 123 0.2260 0.2973 REMARK 3 10 2.4300 - 2.3500 0.99 2525 143 0.2310 0.2991 REMARK 3 11 2.3500 - 2.2800 0.99 2500 128 0.2352 0.2873 REMARK 3 12 2.2800 - 2.2100 0.98 2495 135 0.2544 0.2735 REMARK 3 13 2.2100 - 2.1500 0.98 2524 118 0.2684 0.3058 REMARK 3 14 2.1500 - 2.1000 0.98 2462 151 0.2937 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.974 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3770 REMARK 3 ANGLE : 0.898 5155 REMARK 3 CHIRALITY : 0.046 562 REMARK 3 PLANARITY : 0.005 660 REMARK 3 DIHEDRAL : 11.463 2180 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5526 18.8750 15.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.6024 T22: 0.4535 REMARK 3 T33: 0.3409 T12: 0.3012 REMARK 3 T13: -0.0194 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 1.2829 L22: 1.8860 REMARK 3 L33: 2.4578 L12: -0.3766 REMARK 3 L13: -0.1284 L23: -0.3824 REMARK 3 S TENSOR REMARK 3 S11: 0.3880 S12: 0.5203 S13: -0.2335 REMARK 3 S21: -0.5223 S22: -0.2504 S23: -0.0408 REMARK 3 S31: 0.7091 S32: 0.5242 S33: -0.1204 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6322 16.4018 29.6865 REMARK 3 T TENSOR REMARK 3 T11: 0.4941 T22: 0.3009 REMARK 3 T33: 0.5170 T12: -0.0536 REMARK 3 T13: 0.0338 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.6369 L22: 2.4021 REMARK 3 L33: 2.7294 L12: -0.8774 REMARK 3 L13: 0.5487 L23: -0.1060 REMARK 3 S TENSOR REMARK 3 S11: 0.2287 S12: -0.0496 S13: -0.5036 REMARK 3 S21: 0.1187 S22: -0.1728 S23: 0.6418 REMARK 3 S31: 0.7737 S32: -0.2004 S33: -0.0440 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9664 39.3270 39.8753 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.2009 REMARK 3 T33: 0.2608 T12: 0.0097 REMARK 3 T13: 0.0127 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.1847 L22: 1.4731 REMARK 3 L33: 3.6742 L12: -0.5144 REMARK 3 L13: 0.2740 L23: 0.2058 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: -0.2563 S13: 0.1937 REMARK 3 S21: -0.0040 S22: -0.0355 S23: 0.0041 REMARK 3 S31: -0.0434 S32: 0.0444 S33: -0.0144 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 36.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 200 MM NH4CL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.70500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.59000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.63500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.70500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.59000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.63500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.70500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.59000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.63500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.70500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.59000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.63500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 758 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET A 165 REMARK 465 ALA A 229 REMARK 465 TRP A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 ASN A 233 REMARK 465 PHE A 234 REMARK 465 GLU A 235 REMARK 465 ARG A 236 REMARK 465 PRO A 237 REMARK 465 ARG A 238 REMARK 465 MET A 239 REMARK 465 LYS A 278 REMARK 465 ASN A 279 REMARK 465 SER A 280 REMARK 465 SER A 281 REMARK 465 ARG A 495 REMARK 465 GLY A 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 ASN A 4 CG OD1 ND2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 TRP A 40 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 40 CZ3 CH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 ASP A 82 CG OD1 OD2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 TRP A 91 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 91 CZ3 CH2 REMARK 470 ASN A 92 CG OD1 ND2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 470 SER A 172 OG REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 VAL A 174 CG1 CG2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 MET A 179 CG SD CE REMARK 470 SER A 183 OG REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 VAL A 276 CG1 CG2 REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 GLN A 407 CG CD OE1 NE2 REMARK 470 GLU A 452 CG CD OE1 OE2 REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 ARG A 478 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 489 CG CD OE1 NE2 REMARK 470 ARG A 493 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 494 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -75.90 -141.28 REMARK 500 SER A 129 3.35 -155.17 REMARK 500 ASN A 323 77.19 -151.49 REMARK 500 THR A 366 -93.52 -110.14 REMARK 500 VAL A 464 -63.01 -124.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYX A 501 DBREF 6KX7 A 1 496 UNP P97784 CRY1_MOUSE 1 496 SEQADV 6KX7 GLY A -1 UNP P97784 EXPRESSION TAG SEQADV 6KX7 THR A 0 UNP P97784 EXPRESSION TAG SEQRES 1 A 498 GLY THR MET GLY VAL ASN ALA VAL HIS TRP PHE ARG LYS SEQRES 2 A 498 GLY LEU ARG LEU HIS ASP ASN PRO ALA LEU LYS GLU CYS SEQRES 3 A 498 ILE GLN GLY ALA ASP THR ILE ARG CYS VAL TYR ILE LEU SEQRES 4 A 498 ASP PRO TRP PHE ALA GLY SER SER ASN VAL GLY ILE ASN SEQRES 5 A 498 ARG TRP ARG PHE LEU LEU GLN CYS LEU GLU ASP LEU ASP SEQRES 6 A 498 ALA ASN LEU ARG LYS LEU ASN SER ARG LEU PHE VAL ILE SEQRES 7 A 498 ARG GLY GLN PRO ALA ASP VAL PHE PRO ARG LEU PHE LYS SEQRES 8 A 498 GLU TRP ASN ILE THR LYS LEU SER ILE GLU TYR ASP SER SEQRES 9 A 498 GLU PRO PHE GLY LYS GLU ARG ASP ALA ALA ILE LYS LYS SEQRES 10 A 498 LEU ALA THR GLU ALA GLY VAL GLU VAL ILE VAL ARG ILE SEQRES 11 A 498 SER HIS THR LEU TYR ASP LEU ASP LYS ILE ILE GLU LEU SEQRES 12 A 498 ASN GLY GLY GLN PRO PRO LEU THR TYR LYS ARG PHE GLN SEQRES 13 A 498 THR LEU VAL SER LYS MET GLU PRO LEU GLU MET PRO ALA SEQRES 14 A 498 ASP THR ILE THR SER ASP VAL ILE GLY LYS CYS MET THR SEQRES 15 A 498 PRO LEU SER ASP ASP HIS ASP GLU LYS TYR GLY VAL PRO SEQRES 16 A 498 SER LEU GLU GLU LEU GLY PHE ASP THR ASP GLY LEU SER SEQRES 17 A 498 SER ALA VAL TRP PRO GLY GLY GLU THR GLU ALA LEU THR SEQRES 18 A 498 ARG LEU GLU ARG HIS LEU GLU ARG LYS ALA TRP VAL ALA SEQRES 19 A 498 ASN PHE GLU ARG PRO ARG MET ASN ALA ASN SER LEU LEU SEQRES 20 A 498 ALA SER PRO THR GLY LEU SER PRO TYR LEU ARG PHE GLY SEQRES 21 A 498 CYS LEU SER CYS ARG LEU PHE TYR PHE LYS LEU THR ASP SEQRES 22 A 498 LEU TYR LYS LYS VAL LYS LYS ASN SER SER PRO PRO LEU SEQRES 23 A 498 SER LEU TYR GLY GLN LEU LEU TRP ARG GLU PHE PHE TYR SEQRES 24 A 498 THR ALA ALA THR ASN ASN PRO ARG PHE ASP LYS MET GLU SEQRES 25 A 498 GLY ASN PRO ILE CYS VAL GLN ILE PRO TRP ASP LYS ASN SEQRES 26 A 498 PRO GLU ALA LEU ALA LYS TRP ALA GLU GLY ARG THR GLY SEQRES 27 A 498 PHE PRO TRP ILE ASP ALA ILE MET THR GLN LEU ARG GLN SEQRES 28 A 498 GLU GLY TRP ILE HIS HIS LEU ALA ARG HIS ALA VAL ALA SEQRES 29 A 498 CYS PHE LEU THR ARG GLY ASP LEU TRP ILE SER TRP GLU SEQRES 30 A 498 GLU GLY MET LYS VAL PHE GLU GLU LEU LEU LEU ASP ALA SEQRES 31 A 498 ASP TRP SER ILE ASN ALA GLY SER TRP MET TRP LEU SER SEQRES 32 A 498 CYS SER SER PHE PHE GLN GLN PHE PHE HIS CYS TYR CYS SEQRES 33 A 498 PRO VAL GLY PHE GLY ARG ARG THR ASP PRO ASN GLY ASP SEQRES 34 A 498 TYR ILE ARG ARG TYR LEU PRO VAL LEU ARG GLY PHE PRO SEQRES 35 A 498 ALA LYS TYR ILE TYR ASP PRO TRP ASN ALA PRO GLU GLY SEQRES 36 A 498 ILE GLN LYS VAL ALA LYS CYS LEU ILE GLY VAL ASN TYR SEQRES 37 A 498 PRO LYS PRO MET VAL ASN HIS ALA GLU ALA SER ARG LEU SEQRES 38 A 498 ASN ILE GLU ARG MET LYS GLN ILE TYR GLN GLN LEU SER SEQRES 39 A 498 ARG TYR ARG GLY HET DYX A 501 33 HETNAM DYX 1-(4-CHLOROPHENYL)-N-[2-(4-METHOXYPHENYL)-5,5- HETNAM 2 DYX BIS(OXIDANYLIDENE)-4,6-DIHYDROTHIENO[3,4-C]PYRAZOL-3- HETNAM 3 DYX YL]CYCLOPENTANE-1-CARBOXAMIDE FORMUL 2 DYX C24 H24 CL N3 O4 S FORMUL 3 HOH *159(H2 O) HELIX 1 AA1 ASN A 18 GLN A 26 1 9 HELIX 2 AA2 ASP A 38 ALA A 42 5 5 HELIX 3 AA3 GLY A 48 LEU A 69 1 22 HELIX 4 AA4 GLN A 79 ASN A 92 1 14 HELIX 5 AA5 GLU A 103 ALA A 120 1 18 HELIX 6 AA6 ASP A 134 ASN A 142 1 9 HELIX 7 AA7 THR A 149 LYS A 159 1 11 HELIX 8 AA8 THR A 171 GLY A 176 1 6 HELIX 9 AA9 ASP A 185 GLY A 191 1 7 HELIX 10 AB1 GLY A 213 LYS A 228 1 16 HELIX 11 AB2 ALA A 241 LEU A 245 5 5 HELIX 12 AB3 LEU A 251 PHE A 257 1 7 HELIX 13 AB4 SER A 261 LYS A 277 1 17 HELIX 14 AB5 TYR A 287 THR A 301 1 15 HELIX 15 AB6 ASN A 323 GLU A 332 1 10 HELIX 16 AB7 PHE A 337 GLY A 351 1 15 HELIX 17 AB8 HIS A 354 THR A 366 1 13 HELIX 18 AB9 SER A 373 LEU A 385 1 13 HELIX 19 AC1 ASP A 389 SER A 401 1 13 HELIX 20 AC2 VAL A 416 ASP A 423 1 8 HELIX 21 AC3 GLY A 426 LEU A 433 1 8 HELIX 22 AC4 PRO A 434 ARG A 437 5 4 HELIX 23 AC5 PRO A 440 TYR A 445 1 6 HELIX 24 AC6 ASP A 446 ALA A 450 5 5 HELIX 25 AC7 PRO A 451 LYS A 459 1 9 HELIX 26 AC8 ASN A 472 TYR A 494 1 23 SHEET 1 AA1 5 LEU A 73 ARG A 77 0 SHEET 2 AA1 5 THR A 30 LEU A 37 1 N CYS A 33 O PHE A 74 SHEET 3 AA1 5 ASN A 4 PHE A 9 1 N PHE A 9 O VAL A 34 SHEET 4 AA1 5 ILE A 93 GLU A 99 1 O THR A 94 N ASN A 4 SHEET 5 AA1 5 GLU A 123 ARG A 127 1 O ILE A 125 N LEU A 96 SITE 1 AC1 18 ASP A 203 GLN A 289 TRP A 292 ARG A 293 SITE 2 AC1 18 PHE A 296 HIS A 355 ARG A 358 HIS A 359 SITE 3 AC1 18 PHE A 381 ASP A 387 ALA A 388 ILE A 392 SITE 4 AC1 18 ASN A 393 SER A 396 TRP A 397 TRP A 399 SITE 5 AC1 18 LEU A 400 HOH A 632 CRYST1 79.410 111.180 145.270 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006884 0.00000