HEADER TRANSFERASE 10-SEP-19 6KXF TITLE THE ISHIGAMIDE KETOSYNTHASE/CHAIN LENGTH FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOSYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: KETOSYNTHASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ACP; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. MSC090213JE08; SOURCE 3 ORGANISM_TAXID: 1670457; SOURCE 4 GENE: IGA11; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. MSC090213JE08; SOURCE 9 ORGANISM_TAXID: 1670457; SOURCE 10 GENE: IGA12; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. MSC090213JE08; SOURCE 15 ORGANISM_TAXID: 1670457; SOURCE 16 GENE: IGA10; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS POLYKETIDE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.DU,Y.KATSUYAMA,M.HORIUCHI,S.FUSHINOBU,A.CHEN,T.DAVIS,M.BURKART, AUTHOR 2 Y.OHNISHI REVDAT 3 08-JUL-20 6KXF 1 JRNL REVDAT 2 20-MAY-20 6KXF 1 JRNL REVDAT 1 06-MAY-20 6KXF 0 JRNL AUTH D.DU,Y.KATSUYAMA,M.HORIUCHI,S.FUSHINOBU,A.CHEN,T.D.DAVIS, JRNL AUTH 2 M.D.BURKART,Y.OHNISHI JRNL TITL STRUCTURAL BASIS FOR SELECTIVITY IN A HIGHLY REDUCING TYPE JRNL TITL 2 II POLYKETIDE SYNTHASE. JRNL REF NAT.CHEM.BIOL. V. 16 776 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32367018 JRNL DOI 10.1038/S41589-020-0530-0 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 63794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.293 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6205 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5623 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8443 ; 1.544 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13121 ; 0.978 ; 1.643 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 832 ; 7.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;32.899 ;20.924 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 926 ;15.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;19.329 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 841 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7259 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1069 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6KXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63794 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 47.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.98 REMARK 200 R MERGE FOR SHELL (I) : 1.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: .25 M SODIUM FORMATE AND 25% W/V PEG REMARK 280 3,35, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.93600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.35300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.20550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.35300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.93600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.20550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLU A 409 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 MET B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 ARG B 10 REMARK 465 PRO B 11 REMARK 465 GLU B 12 REMARK 465 ALA B 13 REMARK 465 THR B 14 REMARK 465 GLY B 375 REMARK 465 GLU B 376 REMARK 465 GLN B 377 REMARK 465 ARG B 378 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 THR C 3 REMARK 465 VAL C 4 REMARK 465 LEU C 27 REMARK 465 SER C 28 REMARK 465 ASP C 29 REMARK 465 THR C 30 REMARK 465 ALA C 31 REMARK 465 LEU C 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE C 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 43 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 18.14 -144.28 REMARK 500 CYS A 56 69.02 -110.77 REMARK 500 LEU A 100 -117.27 -120.89 REMARK 500 GLU A 115 53.73 -91.87 REMARK 500 THR A 167 56.56 -111.39 REMARK 500 ALA A 169 -120.91 55.48 REMARK 500 ASP A 217 -88.64 -136.82 REMARK 500 ALA A 267 -86.06 -129.64 REMARK 500 ALA A 323 72.87 -113.63 REMARK 500 MET A 338 -120.63 66.18 REMARK 500 ASN A 378 -24.53 71.93 REMARK 500 PRO B 16 153.38 -42.27 REMARK 500 PRO B 17 -57.63 -28.86 REMARK 500 CYS B 65 67.66 -109.44 REMARK 500 THR B 121 -66.48 -100.97 REMARK 500 MET B 122 29.58 -150.80 REMARK 500 ALA B 175 -159.99 -88.45 REMARK 500 GLU B 242 25.05 -79.04 REMARK 500 ALA B 243 9.69 -154.34 REMARK 500 ALA B 346 27.86 -78.71 REMARK 500 ASP B 347 103.31 -167.75 REMARK 500 PRO C 6 -127.22 -114.68 REMARK 500 ASP C 21 83.63 69.50 REMARK 500 VAL C 22 -158.96 -153.88 REMARK 500 ASP C 23 47.41 -167.83 REMARK 500 ASP C 25 174.25 -52.81 REMARK 500 ASP C 35 -83.73 159.97 REMARK 500 LEU C 37 83.94 149.17 REMARK 500 ALA C 39 156.36 74.94 REMARK 500 ASP C 40 131.66 161.11 REMARK 500 MET C 67 77.65 -102.05 REMARK 500 THR C 68 -72.83 -104.29 REMARK 500 VAL C 70 7.07 -65.95 REMARK 500 GLU C 71 -39.06 -130.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE C 34 ASP C 35 -37.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 8 0.10 SIDE CHAIN REMARK 500 ARG A 141 0.08 SIDE CHAIN REMARK 500 ARG B 79 0.10 SIDE CHAIN REMARK 500 ARG B 178 0.17 SIDE CHAIN REMARK 500 ARG B 190 0.09 SIDE CHAIN REMARK 500 ARG B 246 0.08 SIDE CHAIN REMARK 500 ARG B 301 0.11 SIDE CHAIN REMARK 500 ARG C 11 0.10 SIDE CHAIN REMARK 500 ARG C 13 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYF C 101 DBREF1 6KXF A 1 409 UNP A0A1Y1BW67_9ACTN DBREF2 6KXF A A0A1Y1BW67 1 409 DBREF1 6KXF B 1 378 UNP A0A1Y1BW66_9ACTN DBREF2 6KXF B A0A1Y1BW66 1 378 DBREF1 6KXF C 1 83 UNP A0A1Y1BWQ0_9ACTN DBREF2 6KXF C A0A1Y1BWQ0 1 83 SEQRES 1 A 409 MET SER THR ALA THR ALA ARG ARG ARG VAL VAL LEU THR SEQRES 2 A 409 GLY PHE GLY VAL ILE SER SER ILE GLY THR GLY VAL GLU SEQRES 3 A 409 GLU TYR THR ALA GLY LEU ARG ALA GLY ARG SER GLY ALA SEQRES 4 A 409 ARG PRO ILE THR ARG PHE ASP THR GLU GLY PHE GLY GLN SEQRES 5 A 409 ASN THR ALA CYS GLU VAL PRO ASP PHE GLU PRO GLY ARG SEQRES 6 A 409 TRP ILE HIS HIS VAL PRO LEU ASP ASP MET GLY ARG ALA SEQRES 7 A 409 GLY GLN TYR ALA VAL ALA ALA ALA ARG MET ALA VAL ASP SEQRES 8 A 409 ASP ALA GLY LEU THR GLU ASP ASP LEU GLY GLU ARG GLN SEQRES 9 A 409 ALA VAL ILE THR VAL GLY THR THR ASP GLY GLU SER HIS SEQRES 10 A 409 ASP ILE ALA VAL LEU LEU GLU GLN GLU LEU ALA ALA GLY SEQRES 11 A 409 ASP PRO GLU ALA MET ASP PRO VAL LEU ALA ARG ARG ILE SEQRES 12 A 409 ASN ALA GLY ARG LEU SER THR VAL ILE ALA ARG GLU LEU SEQRES 13 A 409 ARG MET PRO ASN VAL GLU ALA THR THR VAL THR THR ALA SEQRES 14 A 409 CYS ALA ALA GLY ASN TYR SER VAL GLY TYR GLY LEU ASP SEQRES 15 A 409 SER ILE ARG SER GLY GLU VAL ASP ILE ALA LEU CYS GLY SEQRES 16 A 409 GLY ALA ASP ALA VAL CYS ARG LYS ALA PHE ALA LEU PHE SEQRES 17 A 409 LYS ARG PHE GLY ALA LEU THR PRO ASP VAL VAL ARG PRO SEQRES 18 A 409 PHE ASP LYS ASP ARG GLN GLY ILE LEU THR GLY GLU GLY SEQRES 19 A 409 ALA GLY ILE LEU VAL LEU GLU SER LEU GLU SER ALA LEU SEQRES 20 A 409 ALA ARG GLY ALA ARG ILE HIS ALA GLU VAL LEU GLY TYR SEQRES 21 A 409 GLY LEU SER CYS ASP ALA ALA HIS PRO THR ALA PRO ASN SEQRES 22 A 409 ARG ASP GLY ILE ALA ARG GLY ILE ARG LEU ALA LEU ASP SEQRES 23 A 409 ASP ALA GLY VAL GLU GLN GLU GLU ILE ASP PHE ILE SER SEQRES 24 A 409 ALA HIS GLY THR GLY THR LYS ALA ASN ASP LYS THR GLU SEQRES 25 A 409 SER ALA ALA ILE VAL ASP VAL TYR GLY ASP ALA PRO PRO SEQRES 26 A 409 ARG THR VAL ALA VAL LYS SER MET LEU GLY HIS SER MET SEQRES 27 A 409 GLY ALA ALA SER ALA LEU GLY ALA ILE ALA CYS GLY LEU SEQRES 28 A 409 ALA ILE GLU HIS GLY PHE ILE PRO PRO THR ILE ASN HIS SEQRES 29 A 409 ARG GLU THR ASP PRO ASP CYS PRO LEU ASP VAL VAL PRO SEQRES 30 A 409 ASN ARG ALA VAL GLU ALA ASP VAL ARG ILE VAL GLN ASN SEQRES 31 A 409 ASN SER SER ALA PHE ALA GLY ASN ASN ALA VAL LEU ILE SEQRES 32 A 409 LEU GLY THR TYR GLY GLU SEQRES 1 B 378 MET THR THR MET SER THR ALA THR ALA ARG PRO GLU ALA SEQRES 2 B 378 THR LEU PRO PRO GLY THR PRO VAL ILE THR GLY TRP SER SEQRES 3 B 378 ALA VAL SER PRO TYR GLY ILE GLY ARG ALA GLU PHE ALA SEQRES 4 B 378 ALA GLY VAL ARG ALA GLY ALA LYS THR ALA VAL LYS ALA SEQRES 5 B 378 ASP ALA GLY LEU GLY PRO LEU PRO SER SER ASP VAL CYS SEQRES 6 B 378 THR VAL PRO GLY PHE ASP ILE GLN GLU GLN LEU GLY PRO SEQRES 7 B 378 ARG GLY THR ALA LYS MET ASP ARG LEU THR ALA LEU ALA SEQRES 8 B 378 LEU VAL ALA SER ASP GLY LEU LEU LEU ASP ALA ASP GLY SEQRES 9 B 378 ASN ARG ALA VAL ALA THR ASP GLU LEU THR GLY VAL VAL SEQRES 10 B 378 LEU GLY ILE THR MET GLY SER LEU GLU ASN VAL THR ASP SEQRES 11 B 378 PHE LEU ARG GLN SER TYR THR ASN ALA ARG PRO PHE TYR SEQRES 12 B 378 VAL ASP ALA GLY ARG ILE PRO PHE GLY SER LEU ASN HIS SEQRES 13 B 378 ALA ALA GLY ALA THR ALA ILE ARG HIS ASP LEU LYS GLY SEQRES 14 B 378 PRO ASN THR THR VAL ALA GLY GLY ARG VAL SER GLY LEU SEQRES 15 B 378 LEU ALA LEU ASN TYR ALA ARG ARG LEU MET GLY GLN GLY SEQRES 16 B 378 ARG ALA THR LYS TYR LEU VAL GLY SER ALA GLU GLU PHE SEQRES 17 B 378 SER ALA ALA HIS ALA TRP PHE GLU HIS THR ALA THR ALA SEQRES 18 B 378 SER GLY ASP PRO ALA PRO LEU LEU GLY GLU GLY CYS GLY SEQRES 19 B 378 LEU PHE LEU VAL GLU GLN ALA GLU ALA ALA GLU ARG PRO SEQRES 20 B 378 PRO LEU ALA ALA VAL LEU SER VAL GLU THR ARG VAL ASP SEQRES 21 B 378 ILE ASP ASP ASP PRO GLY ALA ALA VAL THR ALA CYS ALA SEQRES 22 B 378 ARG ARG ALA LEU ARG ARG ALA GLY VAL ASP ALA GLY GLU SEQRES 23 B 378 VAL TRP ALA ALA VAL PRO CYS ALA ALA PRO THR ALA ALA SEQRES 24 B 378 GLY ARG ALA GLU HIS GLU ALA LEU ALA ALA LEU VAL PRO SEQRES 25 B 378 ALA ASP ALA LEU SER ARG VAL PRO SER MET GLU LEU LEU SEQRES 26 B 378 GLY ASP THR GLY ALA ALA SER ALA SER PHE GLN ILE ALA SEQRES 27 B 378 ALA VAL LEU ALA ALA ALA GLU ALA ASP ALA ASP SER ARG SEQRES 28 B 378 GLY ARG ILE ALA LEU VAL CYS ALA VAL ASP ARG ASP GLY SEQRES 29 B 378 ALA VAL ALA VAL ALA VAL LEU ARG LEU ILE GLY GLU GLN SEQRES 30 B 378 ARG SEQRES 1 C 83 MET THR THR VAL ALA PRO GLU ARG LEU SER ARG ILE ARG SEQRES 2 C 83 GLU ILE ILE ALA GLU ASN ILE ASP VAL ASP LEU ASP GLY SEQRES 3 C 83 LEU SER ASP THR ALA LEU PHE ILE ASP GLU LEU GLY ALA SEQRES 4 C 83 ASP SER LEU LYS LEU ILE ASP VAL LEU SER ALA LEU GLU SEQRES 5 C 83 MET GLU TYR SER ILE VAL ILE ASP MET ASN GLU LEU PRO SEQRES 6 C 83 LYS MET THR ASN VAL GLU ALA THR TYR GLN VAL THR ALA SEQRES 7 C 83 ALA ALA ALA GLY TRP HET DYF C 101 31 HETNAM DYF [(3~{R})-2,2-DIMETHYL-4-[[3-[2-[[(~{E})-OCT-2- HETNAM 2 DYF ENOYL]AMINO]ETHYLAMINO]-3-OXIDANYLIDENE-PROPYL]AMINO]- HETNAM 3 DYF 3-OXIDANYL-4-OXIDANYLIDENE-BUTYL] DIHYDROGEN PHOSPHATE FORMUL 4 DYF C19 H36 N3 O8 P FORMUL 5 HOH *323(H2 O) HELIX 1 AA1 GLY A 24 GLY A 35 1 12 HELIX 2 AA2 GLU A 62 TRP A 66 5 5 HELIX 3 AA3 PRO A 71 MET A 75 5 5 HELIX 4 AA4 GLY A 76 ALA A 93 1 18 HELIX 5 AA5 THR A 96 LEU A 100 5 5 HELIX 6 AA6 GLU A 115 GLY A 130 1 16 HELIX 7 AA7 ASP A 131 MET A 135 5 5 HELIX 8 AA8 ASP A 136 ARG A 141 1 6 HELIX 9 AA9 ARG A 142 ILE A 143 5 2 HELIX 10 AB1 ASN A 144 ALA A 145 5 2 HELIX 11 AB2 GLY A 146 ARG A 157 1 12 HELIX 12 AB3 THR A 168 CYS A 170 5 3 HELIX 13 AB4 ALA A 171 SER A 186 1 16 HELIX 14 AB5 CYS A 201 PHE A 211 1 11 HELIX 15 AB6 LEU A 243 ARG A 249 1 7 HELIX 16 AB7 ASN A 273 GLY A 289 1 17 HELIX 17 AB8 GLU A 291 ILE A 295 5 5 HELIX 18 AB9 THR A 305 GLY A 321 1 17 HELIX 19 AC1 VAL A 330 GLY A 335 1 6 HELIX 20 AC2 SER A 337 GLY A 339 5 3 HELIX 21 AC3 ALA A 340 GLY A 356 1 17 HELIX 22 AC4 GLY B 34 ALA B 44 1 11 HELIX 23 AC5 ASP B 53 GLY B 57 5 5 HELIX 24 AC6 ASP B 71 GLY B 77 1 7 HELIX 25 AC7 ASP B 85 LEU B 100 1 16 HELIX 26 AC8 SER B 124 ASN B 138 1 15 HELIX 27 AC9 ASP B 145 GLY B 147 5 3 HELIX 28 AD1 ARG B 148 SER B 153 1 6 HELIX 29 AD2 ASN B 155 ASP B 166 1 12 HELIX 30 AD3 GLY B 176 ARG B 178 5 3 HELIX 31 AD4 VAL B 179 GLN B 194 1 16 HELIX 32 AD5 SER B 209 ALA B 219 1 11 HELIX 33 AD6 GLU B 242 ALA B 244 5 3 HELIX 34 AD7 ASP B 264 GLY B 281 1 18 HELIX 35 AD8 ASP B 283 GLY B 285 5 3 HELIX 36 AD9 THR B 297 ALA B 309 1 13 HELIX 37 AE1 PRO B 312 ARG B 318 1 7 HELIX 38 AE2 SER B 321 GLY B 326 5 6 HELIX 39 AE3 THR B 328 ALA B 330 5 3 HELIX 40 AE4 ALA B 331 ALA B 346 1 16 HELIX 41 AE5 ASP B 347 ARG B 351 5 5 HELIX 42 AE6 GLU C 7 ASP C 21 1 15 HELIX 43 AE7 ASP C 40 SER C 56 1 17 HELIX 44 AE8 ASP C 60 MET C 67 5 8 HELIX 45 AE9 GLU C 71 GLY C 82 1 12 SHEET 1 AA1 6 GLY A 22 THR A 23 0 SHEET 2 AA1 6 VAL A 10 SER A 19 -1 N SER A 19 O GLY A 22 SHEET 3 AA1 6 GLY A 234 SER A 242 -1 O GLU A 241 N VAL A 11 SHEET 4 AA1 6 ILE A 191 ASP A 198 -1 N CYS A 194 O LEU A 238 SHEET 5 AA1 6 ALA A 105 GLY A 110 1 N THR A 108 O LEU A 193 SHEET 6 AA1 6 VAL A 161 VAL A 166 1 O GLU A 162 N ILE A 107 SHEET 1 AA2 7 GLY A 22 THR A 23 0 SHEET 2 AA2 7 VAL A 10 SER A 19 -1 N SER A 19 O GLY A 22 SHEET 3 AA2 7 ALA A 255 CYS A 264 -1 O ALA A 255 N LEU A 12 SHEET 4 AA2 7 ASN A 398 GLY A 405 -1 O GLY A 405 N GLU A 256 SHEET 5 AA2 7 ILE A 387 SER A 393 -1 N ASN A 390 O LEU A 402 SHEET 6 AA2 7 PHE A 297 SER A 299 1 N SER A 299 O GLN A 389 SHEET 7 AA2 7 ARG A 326 VAL A 328 1 O VAL A 328 N ILE A 298 SHEET 1 AA3 2 ARG A 40 PRO A 41 0 SHEET 2 AA3 2 THR A 54 ALA A 55 -1 O ALA A 55 N ARG A 40 SHEET 1 AA4 2 PHE A 357 ILE A 358 0 SHEET 2 AA4 2 VAL A 381 GLU A 382 -1 O VAL A 381 N ILE A 358 SHEET 1 AA5 6 GLY B 32 ILE B 33 0 SHEET 2 AA5 6 PRO B 20 SER B 29 -1 N SER B 29 O GLY B 32 SHEET 3 AA5 6 GLY B 232 GLN B 240 -1 O GLU B 239 N VAL B 21 SHEET 4 AA5 6 LYS B 199 GLU B 206 -1 N TYR B 200 O VAL B 238 SHEET 5 AA5 6 THR B 114 GLY B 119 1 N GLY B 115 O LEU B 201 SHEET 6 AA5 6 ASN B 171 VAL B 174 1 O VAL B 174 N LEU B 118 SHEET 1 AA6 6 GLY B 32 ILE B 33 0 SHEET 2 AA6 6 PRO B 20 SER B 29 -1 N SER B 29 O GLY B 32 SHEET 3 AA6 6 ALA B 250 VAL B 259 -1 O VAL B 252 N PRO B 20 SHEET 4 AA6 6 ALA B 365 LEU B 373 -1 O ARG B 372 N ALA B 251 SHEET 5 AA6 6 ILE B 354 VAL B 360 -1 N VAL B 357 O ALA B 369 SHEET 6 AA6 6 VAL B 287 VAL B 291 1 N TRP B 288 O ILE B 354 SHEET 1 AA7 2 VAL B 50 LYS B 51 0 SHEET 2 AA7 2 ASP B 63 VAL B 64 -1 O VAL B 64 N VAL B 50 LINK SG CYS A 170 C26 DYF C 101 1555 1555 1.93 LINK CB SER C 41 O07 DYF C 101 1555 1555 1.34 SITE 1 AC1 17 CYS A 170 LEU A 207 PHE A 211 THR A 270 SITE 2 AC1 17 HIS A 301 THR A 303 THR A 305 ASN A 308 SITE 3 AC1 17 HIS A 336 SER A 393 ALA A 394 PHE A 395 SITE 4 AC1 17 HOH A 576 HOH A 615 SER B 153 SER C 41 SITE 5 AC1 17 HOH C 203 CRYST1 79.872 104.411 114.706 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008718 0.00000