HEADER HYDROLASE 12-SEP-19 6KXO TITLE CRYSTAL STRUCTURE OF VIM-2 METALLO-BETA-LACTAMASE IN COMPLEX WITH TITLE 2 INHIBITOR NO9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLAVIM-2,METALLO BETA-LACTAMASE,METALLO-BETA-LACTAMASE VIM- COMPND 5 2,SUBCLASS B1 METALLO-BETA-LACTAMASE VIM-2,VIM-2,VIM-2 CLASS B BETA- COMPND 6 LACTAMASE,VIM-2 CLASS B METALLO B-LACTAMASE,VIM-2 METALLO-BETA- COMPND 7 LACTAMASE,VIM-2 TYPE METALLO-BETA-LACTAMASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM-2, BLAVIM2, VIM-2, SOURCE 5 VIM-2, IPC669_36195; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WACHINO REVDAT 3 22-NOV-23 6KXO 1 REMARK REVDAT 2 01-SEP-21 6KXO 1 JRNL LINK REVDAT 1 19-FEB-20 6KXO 0 JRNL AUTH J.I.WACHINO,W.JIN,K.KIMURA,H.KUROSAKI,A.SATO,Y.ARAKAWA JRNL TITL SULFAMOYL HETEROARYLCARBOXYLIC ACIDS AS PROMISING JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITORS FOR CONTROLLING BACTERIAL JRNL TITL 3 CARBAPENEM RESISTANCE. JRNL REF MBIO V. 11 2020 JRNL REFN ESSN 2150-7511 JRNL PMID 32184250 JRNL DOI 10.1128/MBIO.03144-19 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 66585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.208 REMARK 3 FREE R VALUE TEST SET COUNT : 3468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 637 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41600 REMARK 3 B22 (A**2) : -0.47600 REMARK 3 B33 (A**2) : 0.00700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.048 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3765 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3373 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5157 ; 1.599 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7808 ; 1.428 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 7.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;30.668 ;21.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;12.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4315 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 750 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 67 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1761 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 433 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.114 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1884 ; 1.258 ; 1.060 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1885 ; 1.257 ; 1.060 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2360 ; 1.849 ; 1.589 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2361 ; 1.848 ; 1.591 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1879 ; 2.273 ; 1.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1880 ; 2.272 ; 1.290 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2780 ; 3.297 ; 1.851 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2781 ; 3.297 ; 1.851 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6KXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AICHISR REMARK 200 BEAMLINE : BL2S1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 55.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4NQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE DIHYDRATE, 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.75050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.75050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 VAL B 264 REMARK 465 VAL B 265 REMARK 465 GLU B 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 117 O HOH A 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 146.68 75.50 REMARK 500 ALA A 86 30.44 -98.29 REMARK 500 TRP A 87 77.90 68.29 REMARK 500 ALA A 178 -105.27 -150.78 REMARK 500 ASP B 84 146.69 75.63 REMARK 500 TRP B 87 70.76 74.97 REMARK 500 ALA B 178 -105.43 -153.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 97.7 REMARK 620 3 HIS A 179 NE2 103.0 105.4 REMARK 620 4 NO9 A 306 S 144.2 89.8 108.5 REMARK 620 5 NO9 A 306 N1 116.6 111.8 119.5 30.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 99.8 REMARK 620 3 HIS A 240 NE2 83.0 104.2 REMARK 620 4 NO9 A 306 O5 157.6 102.4 89.0 REMARK 620 5 NO9 A 306 N1 83.9 111.6 143.5 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 251 ND1 47.7 REMARK 620 3 FMT A 308 O2 123.6 89.6 REMARK 620 4 FMT A 309 O2 106.0 81.7 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 169 O REMARK 620 2 HOH A 408 O 99.3 REMARK 620 3 HOH A 666 O 113.5 112.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 240 O REMARK 620 2 HOH A 445 O 73.4 REMARK 620 3 HOH A 501 O 82.2 132.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 43 O REMARK 620 2 THR B 59 N 113.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 97.8 REMARK 620 3 HIS B 179 NE2 103.0 106.9 REMARK 620 4 NO9 B 306 S 145.9 88.9 106.9 REMARK 620 5 NO9 B 306 N1 117.6 111.1 118.1 31.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 CYS B 198 SG 97.6 REMARK 620 3 HIS B 240 NE2 84.0 103.5 REMARK 620 4 NO9 B 306 O5 163.2 99.2 90.8 REMARK 620 5 NO9 B 306 N1 81.6 115.1 140.2 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 HIS B 251 ND1 42.6 REMARK 620 3 FMT B 307 O2 110.4 92.5 REMARK 620 4 FMT B 308 O2 122.3 90.5 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 169 O REMARK 620 2 HOH B 418 O 100.3 REMARK 620 3 HOH B 702 O 107.1 101.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO9 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO9 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO9 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 308 DBREF 6KXO A 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 6KXO B 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQRES 1 A 240 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 2 A 240 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 3 A 240 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 4 A 240 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 5 A 240 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 6 A 240 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 7 A 240 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 8 A 240 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 9 A 240 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 10 A 240 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 11 A 240 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 12 A 240 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 13 A 240 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 14 A 240 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 15 A 240 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 16 A 240 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 17 A 240 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 18 A 240 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 19 A 240 ASN ARG SER VAL VAL GLU SEQRES 1 B 240 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 2 B 240 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 3 B 240 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 4 B 240 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 5 B 240 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 6 B 240 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 7 B 240 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 8 B 240 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 9 B 240 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 10 B 240 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 11 B 240 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 12 B 240 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 13 B 240 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 14 B 240 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 15 B 240 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 16 B 240 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 17 B 240 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 18 B 240 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 19 B 240 ASN ARG SER VAL VAL GLU HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET MG A 304 1 HET MG A 305 1 HET NO9 A 306 14 HET NO9 A 307 14 HET FMT A 308 3 HET FMT A 309 3 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET MG B 304 1 HET MG B 305 1 HET NO9 B 306 14 HET FMT B 307 3 HET FMT B 308 3 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM NO9 2,5-DIMETHYL-4-SULFAMOYL-FURAN-3-CARBOXYLIC ACID HETNAM FMT FORMIC ACID FORMUL 3 ZN 6(ZN 2+) FORMUL 6 MG 4(MG 2+) FORMUL 8 NO9 3(C7 H9 N O5 S) FORMUL 10 FMT 4(C H2 O2) FORMUL 20 HOH *637(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 ILE A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 HELIX 9 AA9 THR B 35 ILE B 39 5 5 HELIX 10 AB1 GLY B 88 ILE B 103 1 16 HELIX 11 AB2 HIS B 116 GLY B 121 1 6 HELIX 12 AB3 GLY B 122 ALA B 129 1 8 HELIX 13 AB4 SER B 136 GLY B 147 1 12 HELIX 14 AB5 CYS B 198 ILE B 200 5 3 HELIX 15 AB6 GLU B 218 TYR B 230 1 13 HELIX 16 AB7 LEU B 246 ASN B 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O TYR A 67 N GLN A 60 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O TYR A 134 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ASP A 163 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 TYR A 174 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 SHEET 1 AA3 7 ARG B 45 ALA B 50 0 SHEET 2 AA3 7 VAL B 53 PHE B 62 -1 O ILE B 57 N ARG B 45 SHEET 3 AA3 7 ALA B 65 ASP B 76 -1 O ALA B 65 N PHE B 62 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 AA3 7 VAL B 107 VAL B 111 1 O ARG B 109 N LEU B 82 SHEET 6 AA3 7 ALA B 132 ALA B 135 1 O TYR B 134 N ALA B 110 SHEET 7 AA3 7 HIS B 153 SER B 154 1 O HIS B 153 N THR B 133 SHEET 1 AA4 5 ASP B 163 PHE B 167 0 SHEET 2 AA4 5 VAL B 170 TYR B 174 -1 O LEU B 172 N VAL B 165 SHEET 3 AA4 5 VAL B 185 VAL B 188 -1 O TYR B 187 N GLU B 171 SHEET 4 AA4 5 VAL B 193 GLY B 197 -1 O TYR B 195 N VAL B 186 SHEET 5 AA4 5 PHE B 235 PRO B 238 1 O PHE B 235 N LEU B 194 LINK NE2 HIS A 114 ZN ZN A 302 1555 1555 2.01 LINK ND1 HIS A 116 ZN ZN A 302 1555 1555 2.01 LINK OD2 ASP A 118 ZN ZN A 301 1555 1555 2.26 LINK NE2 HIS A 153 ZN ZN A 303 1555 1555 1.98 LINK O PRO A 169 MG MG A 305 1555 1555 2.79 LINK NE2 HIS A 179 ZN ZN A 302 1555 1555 1.97 LINK SG CYS A 198 ZN ZN A 301 1555 1555 2.27 LINK NE2 HIS A 240 ZN ZN A 301 1555 1555 2.06 LINK O HIS A 240 MG MG A 304 1555 1555 2.92 LINK ND1 HIS A 251 ZN ZN A 303 1555 4545 2.05 LINK ZN ZN A 301 O5 NO9 A 306 1555 1555 2.11 LINK ZN ZN A 301 N1 NO9 A 306 1555 1555 2.28 LINK ZN ZN A 302 S NO9 A 306 1555 1555 2.94 LINK ZN ZN A 302 N1 NO9 A 306 1555 1555 1.91 LINK ZN ZN A 303 O2 FMT A 308 1555 1555 1.95 LINK ZN ZN A 303 O2 FMT A 309 1555 1555 1.89 LINK MG MG A 304 O HOH A 445 1555 1555 2.85 LINK MG MG A 304 O HOH A 501 1555 1555 2.87 LINK MG MG A 305 O HOH A 408 1555 1555 2.87 LINK MG MG A 305 O HOH A 666 1555 1555 2.87 LINK O GLU B 43 MG MG B 305 1555 1555 2.63 LINK N THR B 59 MG MG B 305 1555 1555 2.83 LINK NE2 HIS B 114 ZN ZN B 301 1555 1555 2.06 LINK ND1 HIS B 116 ZN ZN B 301 1555 1555 1.99 LINK OD2 ASP B 118 ZN ZN B 302 1555 1555 2.23 LINK NE2 HIS B 153 ZN ZN B 303 1555 1555 2.01 LINK O PRO B 169 MG MG B 304 1555 1555 2.78 LINK NE2 HIS B 179 ZN ZN B 301 1555 1555 2.01 LINK SG CYS B 198 ZN ZN B 302 1555 1555 2.29 LINK NE2 HIS B 240 ZN ZN B 302 1555 1555 2.08 LINK ND1 HIS B 251 ZN ZN B 303 1555 4656 2.05 LINK ZN ZN B 301 S NO9 B 306 1555 1555 2.93 LINK ZN ZN B 301 N1 NO9 B 306 1555 1555 2.01 LINK ZN ZN B 302 O5 NO9 B 306 1555 1555 2.11 LINK ZN ZN B 302 N1 NO9 B 306 1555 1555 2.21 LINK ZN ZN B 303 O2 FMT B 307 1555 1555 1.94 LINK ZN ZN B 303 O2 FMT B 308 1555 1555 1.96 LINK MG MG B 304 O HOH B 418 1555 1555 2.87 LINK MG MG B 304 O HOH B 702 1555 1555 2.85 SITE 1 AC1 5 ASP A 118 CYS A 198 HIS A 240 ZN A 302 SITE 2 AC1 5 NO9 A 306 SITE 1 AC2 5 HIS A 114 HIS A 116 HIS A 179 ZN A 301 SITE 2 AC2 5 NO9 A 306 SITE 1 AC3 4 HIS A 153 HIS A 251 FMT A 308 FMT A 309 SITE 1 AC4 6 TYR A 201 GLU A 202 ARG A 205 HIS A 240 SITE 2 AC4 6 HOH A 445 HOH A 501 SITE 1 AC5 6 PRO A 169 VAL A 188 PRO A 189 SER A 190 SITE 2 AC5 6 HOH A 408 HOH A 666 SITE 1 AC6 16 TYR A 67 TRP A 87 HIS A 114 HIS A 116 SITE 2 AC6 16 ASP A 118 HIS A 179 CYS A 198 ARG A 205 SITE 3 AC6 16 ASN A 210 HIS A 240 ZN A 301 ZN A 302 SITE 4 AC6 16 NO9 A 307 HOH A 488 HOH A 491 HOH A 569 SITE 1 AC7 7 PHE A 62 TYR A 67 TRP A 87 ASN A 210 SITE 2 AC7 7 NO9 A 306 HOH A 402 HOH A 488 SITE 1 AC8 7 ALA A 132 HIS A 153 HIS A 251 ASN A 254 SITE 2 AC8 7 ZN A 303 FMT A 309 HOH A 422 SITE 1 AC9 6 HIS A 153 HIS A 251 ZN A 303 FMT A 308 SITE 2 AC9 6 HOH A 451 HOH A 530 SITE 1 AD1 5 HIS B 114 HIS B 116 HIS B 179 ZN B 302 SITE 2 AD1 5 NO9 B 306 SITE 1 AD2 5 ASP B 118 CYS B 198 HIS B 240 ZN B 301 SITE 2 AD2 5 NO9 B 306 SITE 1 AD3 4 HIS B 153 HIS B 251 FMT B 307 FMT B 308 SITE 1 AD4 6 PRO B 169 VAL B 188 PRO B 189 SER B 190 SITE 2 AD4 6 HOH B 418 HOH B 702 SITE 1 AD5 7 PRO B 40 VAL B 41 GLY B 42 GLU B 43 SITE 2 AD5 7 ALA B 58 THR B 59 ASN B 91 SITE 1 AD6 14 TYR B 67 TRP B 87 HIS B 114 HIS B 116 SITE 2 AD6 14 ASP B 118 HIS B 179 CYS B 198 ARG B 205 SITE 3 AD6 14 ASN B 210 HIS B 240 ZN B 301 ZN B 302 SITE 4 AD6 14 HOH B 512 HOH B 525 SITE 1 AD7 8 ALA B 132 THR B 133 THR B 152 HIS B 153 SITE 2 AD7 8 HIS B 251 ZN B 303 FMT B 308 HOH B 435 SITE 1 AD8 7 ALA B 132 HIS B 153 HIS B 251 ASN B 254 SITE 2 AD8 7 ZN B 303 FMT B 307 HOH B 459 CRYST1 101.501 79.210 67.660 90.00 130.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009852 0.000000 0.008305 0.00000 SCALE2 0.000000 0.012625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019330 0.00000