HEADER STRUCTURAL PROTEIN/SIGNALING PROTEIN 19-SEP-19 6KYK TITLE CRYSTAL STRUCTURE OF SHANK3 NTD-ANK MUTANT IN COMPLEX WITH RAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NTD-ANK TANDEM; COMPND 5 SYNONYM: SHANK3,PROLINE-RICH SYNAPSE-ASSOCIATED PROTEIN 2,PROSAP2, COMPND 6 SPANK-2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RAS-RELATED PROTEIN RAP-1B; COMPND 11 CHAIN: C, D, E, F; COMPND 12 SYNONYM: GTP-BINDING PROTEIN SMG P21B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SHANK3, KIAA1650, PROSAP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM3C; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RAP1B, OK/SW-CL.11; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PSKB2 KEYWDS SHANK3, GTPASE, SYNAPTIC SCAFFOLD PROTEIN, STRUCTURAL PROTEIN- KEYWDS 2 SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.CAI,M.ZHANG REVDAT 5 16-OCT-24 6KYK 1 REMARK REVDAT 4 22-NOV-23 6KYK 1 LINK REVDAT 3 18-MAR-20 6KYK 1 JRNL REVDAT 2 29-JAN-20 6KYK 1 JRNL REVDAT 1 04-DEC-19 6KYK 0 JRNL AUTH Q.CAI,T.HOSOKAWA,M.ZENG,Y.HAYASHI,M.ZHANG JRNL TITL SHANK3 BINDS TO AND STABILIZES THE ACTIVE FORM OF RAP1 AND JRNL TITL 2 HRAS GTPASES VIA ITS NTD-ANK TANDEM WITH DISTINCT JRNL TITL 3 MECHANISMS. JRNL REF STRUCTURE V. 28 290 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 31879129 JRNL DOI 10.1016/J.STR.2019.11.018 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 38087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2341 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81000 REMARK 3 B22 (A**2) : 8.87000 REMARK 3 B33 (A**2) : -3.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.478 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.489 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11338 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 10338 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15364 ; 1.483 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 23982 ; 1.201 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1388 ; 5.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 662 ;35.909 ;22.598 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1958 ;22.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 86 ;21.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1440 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12776 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2370 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 7 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 361 B 6 361 10994 0.110 0.050 REMARK 3 2 C 0 166 D 0 166 5094 0.120 0.050 REMARK 3 3 C -1 167 E -1 167 5220 0.110 0.050 REMARK 3 4 C 0 166 F 0 166 5073 0.130 0.050 REMARK 3 5 D 0 166 E 0 166 4960 0.140 0.050 REMARK 3 6 D 0 167 F 0 167 5193 0.110 0.050 REMARK 3 7 E 0 166 F 0 166 4930 0.150 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6KYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40063 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G4X, 4DXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE (PH8.5), 1% DEXTRAN REMARK 280 SULFATE SODIUM SALT, 5% PEG 20000, 10% PEG 1500, EVAPORATION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.51600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.05350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.51600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.05350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 364 REMARK 465 ALA A 365 REMARK 465 SER A 366 REMARK 465 PRO A 367 REMARK 465 ARG A 368 REMARK 465 GLY B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 363 REMARK 465 LEU B 364 REMARK 465 ALA B 365 REMARK 465 SER B 366 REMARK 465 PRO B 367 REMARK 465 ARG B 368 REMARK 465 GLY C -2 REMARK 465 GLY D -2 REMARK 465 PRO D -1 REMARK 465 GLY E -2 REMARK 465 GLY F -2 REMARK 465 PRO F -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA C 59 NE2 GLN C 63 1.10 REMARK 500 OD1 ASP E 119 OG SER E 147 1.30 REMARK 500 NE2 GLN F 43 OE1 GLN F 50 1.36 REMARK 500 NZ LYS B 309 O ILE B 335 1.40 REMARK 500 NH1 ARG A 25 OE2 GLU C 62 1.45 REMARK 500 OG SER F 17 MG MG F 202 1.52 REMARK 500 OG SER C 17 MG MG C 202 1.52 REMARK 500 OG SER E 17 MG MG E 202 1.59 REMARK 500 OG1 THR D 35 MG MG D 202 1.64 REMARK 500 O GLN F 94 OE1 GLU F 98 1.66 REMARK 500 OG SER D 17 MG MG D 202 1.67 REMARK 500 MG MG F 202 O HOH F 303 1.69 REMARK 500 OE1 GLU A 89 NH2 ARG A 91 1.77 REMARK 500 O ASP F 95 OE2 GLU F 98 1.82 REMARK 500 O MET D 72 NZ LYS D 104 1.86 REMARK 500 O ARG A 25 NH1 ARG A 38 1.93 REMARK 500 O GLN F 94 CD GLU F 98 1.95 REMARK 500 NE2 GLN D 130 O HOH D 301 1.97 REMARK 500 C ASP F 95 OE2 GLU F 98 2.00 REMARK 500 OE2 GLU E 3 NH1 ARG E 41 2.04 REMARK 500 OD1 ASN B 313 O GLN B 317 2.10 REMARK 500 O GLU E 30 O3' GNP E 201 2.11 REMARK 500 C GLN F 94 OE1 GLU F 98 2.15 REMARK 500 O GLN F 94 OE2 GLU F 98 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO E -1 CA - N - CD ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 37 128.29 -172.85 REMARK 500 TRP C 138 49.69 -83.56 REMARK 500 TRP D 138 48.80 -83.87 REMARK 500 TRP E 138 49.76 -83.49 REMARK 500 TRP F 138 49.75 -84.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 309 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH E 310 DISTANCE = 7.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 35 OG1 REMARK 620 2 GNP C 201 O3G 75.7 REMARK 620 3 GNP C 201 O2B 132.3 68.7 REMARK 620 4 HOH C 301 O 81.5 58.4 53.2 REMARK 620 5 HOH C 303 O 113.5 83.8 93.4 135.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP D 201 O3G REMARK 620 2 GNP D 201 O2B 81.4 REMARK 620 3 HOH D 303 O 119.4 93.7 REMARK 620 4 HOH D 305 O 75.4 84.7 164.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR E 35 OG1 REMARK 620 2 GNP E 201 O3G 75.8 REMARK 620 3 GNP E 201 O2B 143.8 68.0 REMARK 620 4 HOH E 302 O 105.7 69.2 62.8 REMARK 620 5 HOH E 303 O 75.9 83.9 98.5 151.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR F 35 OG1 REMARK 620 2 GNP F 201 O3G 73.8 REMARK 620 3 GNP F 201 O2B 131.2 63.0 REMARK 620 4 HOH F 301 O 68.5 73.0 77.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP F 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6KYH RELATED DB: PDB DBREF 6KYK A 1 368 UNP Q4ACU6 SHAN3_MOUSE 1 368 DBREF 6KYK B 1 368 UNP Q4ACU6 SHAN3_MOUSE 1 368 DBREF 6KYK C 1 167 UNP P61224 RAP1B_HUMAN 1 167 DBREF 6KYK D 1 167 UNP P61224 RAP1B_HUMAN 1 167 DBREF 6KYK E 1 167 UNP P61224 RAP1B_HUMAN 1 167 DBREF 6KYK F 1 167 UNP P61224 RAP1B_HUMAN 1 167 SEQADV 6KYK GLY A -5 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK PRO A -4 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK GLY A -3 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK SER A -2 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK GLU A -1 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK PHE A 0 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK ARG A 231 UNP Q4ACU6 LEU 231 ENGINEERED MUTATION SEQADV 6KYK TYR A 304 UNP Q4ACU6 PHE 304 ENGINEERED MUTATION SEQADV 6KYK GLY B -5 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK PRO B -4 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK GLY B -3 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK SER B -2 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK GLU B -1 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK PHE B 0 UNP Q4ACU6 EXPRESSION TAG SEQADV 6KYK ARG B 231 UNP Q4ACU6 LEU 231 ENGINEERED MUTATION SEQADV 6KYK TYR B 304 UNP Q4ACU6 PHE 304 ENGINEERED MUTATION SEQADV 6KYK GLY C -2 UNP P61224 EXPRESSION TAG SEQADV 6KYK PRO C -1 UNP P61224 EXPRESSION TAG SEQADV 6KYK HIS C 0 UNP P61224 EXPRESSION TAG SEQADV 6KYK GLY D -2 UNP P61224 EXPRESSION TAG SEQADV 6KYK PRO D -1 UNP P61224 EXPRESSION TAG SEQADV 6KYK HIS D 0 UNP P61224 EXPRESSION TAG SEQADV 6KYK GLY E -2 UNP P61224 EXPRESSION TAG SEQADV 6KYK PRO E -1 UNP P61224 EXPRESSION TAG SEQADV 6KYK HIS E 0 UNP P61224 EXPRESSION TAG SEQADV 6KYK GLY F -2 UNP P61224 EXPRESSION TAG SEQADV 6KYK PRO F -1 UNP P61224 EXPRESSION TAG SEQADV 6KYK HIS F 0 UNP P61224 EXPRESSION TAG SEQRES 1 A 374 GLY PRO GLY SER GLU PHE MET ASP GLY PRO GLY ALA SER SEQRES 2 A 374 ALA VAL VAL VAL ARG VAL GLY ILE PRO ASP LEU GLN GLN SEQRES 3 A 374 THR LYS CYS LEU ARG LEU ASP PRO THR ALA PRO VAL TRP SEQRES 4 A 374 ALA ALA LYS GLN ARG VAL LEU CYS ALA LEU ASN HIS SER SEQRES 5 A 374 LEU GLN ASP ALA LEU ASN TYR GLY LEU PHE GLN PRO PRO SEQRES 6 A 374 SER ARG GLY ARG ALA GLY LYS PHE LEU ASP GLU GLU ARG SEQRES 7 A 374 LEU LEU GLN ASP TYR PRO PRO ASN LEU ASP THR PRO LEU SEQRES 8 A 374 PRO TYR LEU GLU PHE ARG TYR LYS ARG ARG VAL TYR ALA SEQRES 9 A 374 GLN ASN LEU ILE ASP ASP LYS GLN PHE ALA LYS LEU HIS SEQRES 10 A 374 THR LYS ALA ASN LEU LYS LYS PHE MET ASP TYR VAL GLN SEQRES 11 A 374 LEU HIS SER THR ASP LYS VAL ALA ARG LEU LEU ASP LYS SEQRES 12 A 374 GLY LEU ASP PRO ASN PHE HIS ASP PRO ASP SER GLY GLU SEQRES 13 A 374 CYS PRO LEU SER LEU ALA ALA GLN LEU ASP ASN ALA THR SEQRES 14 A 374 ASP LEU LEU LYS VAL LEU ARG ASN GLY GLY ALA HIS LEU SEQRES 15 A 374 ASP PHE ARG THR ARG ASP GLY LEU THR ALA VAL HIS CYS SEQRES 16 A 374 ALA THR ARG GLN ARG ASN ALA GLY ALA LEU THR THR LEU SEQRES 17 A 374 LEU ASP LEU GLY ALA SER PRO ASP TYR LYS ASP SER ARG SEQRES 18 A 374 GLY LEU THR PRO LEU TYR HIS SER ALA LEU GLY GLY GLY SEQRES 19 A 374 ASP ALA ARG CYS CYS GLU LEU LEU LEU HIS ASP HIS ALA SEQRES 20 A 374 GLN LEU GLY THR THR ASP GLU ASN GLY TRP GLN GLU ILE SEQRES 21 A 374 HIS GLN ALA CYS ARG PHE GLY HIS VAL GLN HIS LEU GLU SEQRES 22 A 374 HIS LEU LEU PHE TYR GLY ALA ASN MET GLY ALA GLN ASN SEQRES 23 A 374 ALA SER GLY ASN THR ALA LEU HIS ILE CYS ALA LEU TYR SEQRES 24 A 374 ASN GLN GLU SER CYS ALA ARG VAL LEU LEU TYR ARG GLY SEQRES 25 A 374 ALA ASN LYS ASP VAL ARG ASN TYR ASN SER GLN THR ALA SEQRES 26 A 374 PHE GLN VAL ALA ILE ILE ALA GLY ASN PHE GLU LEU ALA SEQRES 27 A 374 GLU VAL ILE LYS THR HIS LYS ASP SER ASP VAL VAL PRO SEQRES 28 A 374 PHE ARG GLU THR PRO SER TYR ALA LYS ARG ARG ARG LEU SEQRES 29 A 374 ALA GLY PRO SER GLY LEU ALA SER PRO ARG SEQRES 1 B 374 GLY PRO GLY SER GLU PHE MET ASP GLY PRO GLY ALA SER SEQRES 2 B 374 ALA VAL VAL VAL ARG VAL GLY ILE PRO ASP LEU GLN GLN SEQRES 3 B 374 THR LYS CYS LEU ARG LEU ASP PRO THR ALA PRO VAL TRP SEQRES 4 B 374 ALA ALA LYS GLN ARG VAL LEU CYS ALA LEU ASN HIS SER SEQRES 5 B 374 LEU GLN ASP ALA LEU ASN TYR GLY LEU PHE GLN PRO PRO SEQRES 6 B 374 SER ARG GLY ARG ALA GLY LYS PHE LEU ASP GLU GLU ARG SEQRES 7 B 374 LEU LEU GLN ASP TYR PRO PRO ASN LEU ASP THR PRO LEU SEQRES 8 B 374 PRO TYR LEU GLU PHE ARG TYR LYS ARG ARG VAL TYR ALA SEQRES 9 B 374 GLN ASN LEU ILE ASP ASP LYS GLN PHE ALA LYS LEU HIS SEQRES 10 B 374 THR LYS ALA ASN LEU LYS LYS PHE MET ASP TYR VAL GLN SEQRES 11 B 374 LEU HIS SER THR ASP LYS VAL ALA ARG LEU LEU ASP LYS SEQRES 12 B 374 GLY LEU ASP PRO ASN PHE HIS ASP PRO ASP SER GLY GLU SEQRES 13 B 374 CYS PRO LEU SER LEU ALA ALA GLN LEU ASP ASN ALA THR SEQRES 14 B 374 ASP LEU LEU LYS VAL LEU ARG ASN GLY GLY ALA HIS LEU SEQRES 15 B 374 ASP PHE ARG THR ARG ASP GLY LEU THR ALA VAL HIS CYS SEQRES 16 B 374 ALA THR ARG GLN ARG ASN ALA GLY ALA LEU THR THR LEU SEQRES 17 B 374 LEU ASP LEU GLY ALA SER PRO ASP TYR LYS ASP SER ARG SEQRES 18 B 374 GLY LEU THR PRO LEU TYR HIS SER ALA LEU GLY GLY GLY SEQRES 19 B 374 ASP ALA ARG CYS CYS GLU LEU LEU LEU HIS ASP HIS ALA SEQRES 20 B 374 GLN LEU GLY THR THR ASP GLU ASN GLY TRP GLN GLU ILE SEQRES 21 B 374 HIS GLN ALA CYS ARG PHE GLY HIS VAL GLN HIS LEU GLU SEQRES 22 B 374 HIS LEU LEU PHE TYR GLY ALA ASN MET GLY ALA GLN ASN SEQRES 23 B 374 ALA SER GLY ASN THR ALA LEU HIS ILE CYS ALA LEU TYR SEQRES 24 B 374 ASN GLN GLU SER CYS ALA ARG VAL LEU LEU TYR ARG GLY SEQRES 25 B 374 ALA ASN LYS ASP VAL ARG ASN TYR ASN SER GLN THR ALA SEQRES 26 B 374 PHE GLN VAL ALA ILE ILE ALA GLY ASN PHE GLU LEU ALA SEQRES 27 B 374 GLU VAL ILE LYS THR HIS LYS ASP SER ASP VAL VAL PRO SEQRES 28 B 374 PHE ARG GLU THR PRO SER TYR ALA LYS ARG ARG ARG LEU SEQRES 29 B 374 ALA GLY PRO SER GLY LEU ALA SER PRO ARG SEQRES 1 C 170 GLY PRO HIS MET ARG GLU TYR LYS LEU VAL VAL LEU GLY SEQRES 2 C 170 SER GLY GLY VAL GLY LYS SER ALA LEU THR VAL GLN PHE SEQRES 3 C 170 VAL GLN GLY ILE PHE VAL GLU LYS TYR ASP PRO THR ILE SEQRES 4 C 170 GLU ASP SER TYR ARG LYS GLN VAL GLU VAL ASP ALA GLN SEQRES 5 C 170 GLN CYS MET LEU GLU ILE LEU ASP THR ALA GLY THR GLU SEQRES 6 C 170 GLN PHE THR ALA MET ARG ASP LEU TYR MET LYS ASN GLY SEQRES 7 C 170 GLN GLY PHE ALA LEU VAL TYR SER ILE THR ALA GLN SER SEQRES 8 C 170 THR PHE ASN ASP LEU GLN ASP LEU ARG GLU GLN ILE LEU SEQRES 9 C 170 ARG VAL LYS ASP THR ASP ASP VAL PRO MET ILE LEU VAL SEQRES 10 C 170 GLY ASN LYS CYS ASP LEU GLU ASP GLU ARG VAL VAL GLY SEQRES 11 C 170 LYS GLU GLN GLY GLN ASN LEU ALA ARG GLN TRP ASN ASN SEQRES 12 C 170 CYS ALA PHE LEU GLU SER SER ALA LYS SER LYS ILE ASN SEQRES 13 C 170 VAL ASN GLU ILE PHE TYR ASP LEU VAL ARG GLN ILE ASN SEQRES 14 C 170 ARG SEQRES 1 D 170 GLY PRO HIS MET ARG GLU TYR LYS LEU VAL VAL LEU GLY SEQRES 2 D 170 SER GLY GLY VAL GLY LYS SER ALA LEU THR VAL GLN PHE SEQRES 3 D 170 VAL GLN GLY ILE PHE VAL GLU LYS TYR ASP PRO THR ILE SEQRES 4 D 170 GLU ASP SER TYR ARG LYS GLN VAL GLU VAL ASP ALA GLN SEQRES 5 D 170 GLN CYS MET LEU GLU ILE LEU ASP THR ALA GLY THR GLU SEQRES 6 D 170 GLN PHE THR ALA MET ARG ASP LEU TYR MET LYS ASN GLY SEQRES 7 D 170 GLN GLY PHE ALA LEU VAL TYR SER ILE THR ALA GLN SER SEQRES 8 D 170 THR PHE ASN ASP LEU GLN ASP LEU ARG GLU GLN ILE LEU SEQRES 9 D 170 ARG VAL LYS ASP THR ASP ASP VAL PRO MET ILE LEU VAL SEQRES 10 D 170 GLY ASN LYS CYS ASP LEU GLU ASP GLU ARG VAL VAL GLY SEQRES 11 D 170 LYS GLU GLN GLY GLN ASN LEU ALA ARG GLN TRP ASN ASN SEQRES 12 D 170 CYS ALA PHE LEU GLU SER SER ALA LYS SER LYS ILE ASN SEQRES 13 D 170 VAL ASN GLU ILE PHE TYR ASP LEU VAL ARG GLN ILE ASN SEQRES 14 D 170 ARG SEQRES 1 E 170 GLY PRO HIS MET ARG GLU TYR LYS LEU VAL VAL LEU GLY SEQRES 2 E 170 SER GLY GLY VAL GLY LYS SER ALA LEU THR VAL GLN PHE SEQRES 3 E 170 VAL GLN GLY ILE PHE VAL GLU LYS TYR ASP PRO THR ILE SEQRES 4 E 170 GLU ASP SER TYR ARG LYS GLN VAL GLU VAL ASP ALA GLN SEQRES 5 E 170 GLN CYS MET LEU GLU ILE LEU ASP THR ALA GLY THR GLU SEQRES 6 E 170 GLN PHE THR ALA MET ARG ASP LEU TYR MET LYS ASN GLY SEQRES 7 E 170 GLN GLY PHE ALA LEU VAL TYR SER ILE THR ALA GLN SER SEQRES 8 E 170 THR PHE ASN ASP LEU GLN ASP LEU ARG GLU GLN ILE LEU SEQRES 9 E 170 ARG VAL LYS ASP THR ASP ASP VAL PRO MET ILE LEU VAL SEQRES 10 E 170 GLY ASN LYS CYS ASP LEU GLU ASP GLU ARG VAL VAL GLY SEQRES 11 E 170 LYS GLU GLN GLY GLN ASN LEU ALA ARG GLN TRP ASN ASN SEQRES 12 E 170 CYS ALA PHE LEU GLU SER SER ALA LYS SER LYS ILE ASN SEQRES 13 E 170 VAL ASN GLU ILE PHE TYR ASP LEU VAL ARG GLN ILE ASN SEQRES 14 E 170 ARG SEQRES 1 F 170 GLY PRO HIS MET ARG GLU TYR LYS LEU VAL VAL LEU GLY SEQRES 2 F 170 SER GLY GLY VAL GLY LYS SER ALA LEU THR VAL GLN PHE SEQRES 3 F 170 VAL GLN GLY ILE PHE VAL GLU LYS TYR ASP PRO THR ILE SEQRES 4 F 170 GLU ASP SER TYR ARG LYS GLN VAL GLU VAL ASP ALA GLN SEQRES 5 F 170 GLN CYS MET LEU GLU ILE LEU ASP THR ALA GLY THR GLU SEQRES 6 F 170 GLN PHE THR ALA MET ARG ASP LEU TYR MET LYS ASN GLY SEQRES 7 F 170 GLN GLY PHE ALA LEU VAL TYR SER ILE THR ALA GLN SER SEQRES 8 F 170 THR PHE ASN ASP LEU GLN ASP LEU ARG GLU GLN ILE LEU SEQRES 9 F 170 ARG VAL LYS ASP THR ASP ASP VAL PRO MET ILE LEU VAL SEQRES 10 F 170 GLY ASN LYS CYS ASP LEU GLU ASP GLU ARG VAL VAL GLY SEQRES 11 F 170 LYS GLU GLN GLY GLN ASN LEU ALA ARG GLN TRP ASN ASN SEQRES 12 F 170 CYS ALA PHE LEU GLU SER SER ALA LYS SER LYS ILE ASN SEQRES 13 F 170 VAL ASN GLU ILE PHE TYR ASP LEU VAL ARG GLN ILE ASN SEQRES 14 F 170 ARG HET GNP C 201 32 HET MG C 202 1 HET GNP D 201 32 HET MG D 202 1 HET GNP E 201 32 HET MG E 202 1 HET GNP F 201 32 HET MG F 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 7 GNP 4(C10 H17 N6 O13 P3) FORMUL 8 MG 4(MG 2+) FORMUL 15 HOH *73(H2 O) HELIX 1 AA1 PRO A 31 LEU A 43 1 13 HELIX 2 AA2 ASP A 49 LEU A 51 5 3 HELIX 3 AA3 LEU A 73 TYR A 77 5 5 HELIX 4 AA4 ASP A 103 HIS A 111 1 9 HELIX 5 AA5 THR A 112 LEU A 125 1 14 HELIX 6 AA6 SER A 127 GLY A 138 1 12 HELIX 7 AA7 CYS A 151 LEU A 159 1 9 HELIX 8 AA8 ALA A 162 GLY A 172 1 11 HELIX 9 AA9 THR A 185 GLN A 193 1 9 HELIX 10 AB1 ASN A 195 LEU A 205 1 11 HELIX 11 AB2 THR A 218 GLY A 227 1 10 HELIX 12 AB3 ALA A 230 ASP A 239 1 10 HELIX 13 AB4 GLN A 252 GLY A 261 1 10 HELIX 14 AB5 HIS A 262 TYR A 272 1 11 HELIX 15 AB6 THR A 285 TYR A 293 1 9 HELIX 16 AB7 GLN A 295 ARG A 305 1 11 HELIX 17 AB8 THR A 318 GLY A 327 1 10 HELIX 18 AB9 ASN A 328 HIS A 338 1 11 HELIX 19 AC1 LYS A 339 VAL A 343 5 5 HELIX 20 AC2 PRO B 31 LEU B 43 1 13 HELIX 21 AC3 ASP B 49 LEU B 51 5 3 HELIX 22 AC4 LEU B 73 TYR B 77 5 5 HELIX 23 AC5 ASP B 103 HIS B 111 1 9 HELIX 24 AC6 THR B 112 LEU B 125 1 14 HELIX 25 AC7 SER B 127 GLY B 138 1 12 HELIX 26 AC8 CYS B 151 LEU B 159 1 9 HELIX 27 AC9 ALA B 162 GLY B 172 1 11 HELIX 28 AD1 THR B 185 GLN B 193 1 9 HELIX 29 AD2 ASN B 195 LEU B 205 1 11 HELIX 30 AD3 THR B 218 GLY B 227 1 10 HELIX 31 AD4 ALA B 230 ASP B 239 1 10 HELIX 32 AD5 GLN B 252 GLY B 261 1 10 HELIX 33 AD6 HIS B 262 TYR B 272 1 11 HELIX 34 AD7 THR B 285 TYR B 293 1 9 HELIX 35 AD8 GLN B 295 ARG B 305 1 11 HELIX 36 AD9 THR B 318 GLY B 327 1 10 HELIX 37 AE1 ASN B 328 HIS B 338 1 11 HELIX 38 AE2 LYS B 339 VAL B 343 5 5 HELIX 39 AE3 GLY C 15 GLY C 26 1 12 HELIX 40 AE4 PHE C 64 GLY C 75 1 12 HELIX 41 AE5 ALA C 86 ASP C 105 1 20 HELIX 42 AE6 GLY C 127 TRP C 138 1 12 HELIX 43 AE7 ASN C 153 ARG C 167 1 15 HELIX 44 AE8 GLY D 15 GLY D 26 1 12 HELIX 45 AE9 PHE D 64 GLY D 75 1 12 HELIX 46 AF1 ALA D 86 ASP D 105 1 20 HELIX 47 AF2 GLY D 127 TRP D 138 1 12 HELIX 48 AF3 ASN D 153 ARG D 167 1 15 HELIX 49 AF4 GLY E 15 GLY E 26 1 12 HELIX 50 AF5 PHE E 64 GLY E 75 1 12 HELIX 51 AF6 ALA E 86 ASP E 105 1 20 HELIX 52 AF7 GLY E 127 TRP E 138 1 12 HELIX 53 AF8 ASN E 153 ARG E 167 1 15 HELIX 54 AF9 GLY F 15 GLY F 26 1 12 HELIX 55 AG1 PHE F 64 GLY F 75 1 12 HELIX 56 AG2 ALA F 86 ASP F 105 1 20 HELIX 57 AG3 GLY F 127 TRP F 138 1 12 HELIX 58 AG4 ASN F 153 ARG F 167 1 15 SHEET 1 AA111 LYS A 66 PHE A 67 0 SHEET 2 AA111 TYR A 53 GLN A 57 -1 N GLN A 57 O LYS A 66 SHEET 3 AA111 TYR A 87 TYR A 92 -1 O GLU A 89 N PHE A 56 SHEET 4 AA111 VAL A 9 ILE A 15 1 N ARG A 12 O LEU A 88 SHEET 5 AA111 GLN A 20 LEU A 26 -1 O GLN A 20 N ILE A 15 SHEET 6 AA111 ASP C 38 VAL C 46 -1 O SER C 39 N THR A 21 SHEET 7 AA111 GLN C 49 ASP C 57 -1 O ILE C 55 N TYR C 40 SHEET 8 AA111 ARG C 2 GLY C 10 1 N TYR C 4 O MET C 52 SHEET 9 AA111 GLY C 77 SER C 83 1 O ALA C 79 N VAL C 7 SHEET 10 AA111 MET C 111 ASN C 116 1 O ASN C 116 N TYR C 82 SHEET 11 AA111 ALA C 142 GLU C 145 1 O LEU C 144 N GLY C 115 SHEET 1 AA211 LYS B 66 PHE B 67 0 SHEET 2 AA211 TYR B 53 GLN B 57 -1 N GLN B 57 O LYS B 66 SHEET 3 AA211 TYR B 87 TYR B 92 -1 O GLU B 89 N PHE B 56 SHEET 4 AA211 VAL B 9 ILE B 15 1 N ARG B 12 O LEU B 88 SHEET 5 AA211 GLN B 20 LEU B 26 -1 O LYS B 22 N VAL B 13 SHEET 6 AA211 ASP E 38 VAL E 46 -1 O SER E 39 N THR B 21 SHEET 7 AA211 GLN E 49 ASP E 57 -1 O CYS E 51 N VAL E 44 SHEET 8 AA211 ARG E 2 LEU E 9 1 N TYR E 4 O GLU E 54 SHEET 9 AA211 GLY E 77 SER E 83 1 O ALA E 79 N VAL E 7 SHEET 10 AA211 MET E 111 ASN E 116 1 O ASN E 116 N TYR E 82 SHEET 11 AA211 ALA E 142 GLU E 145 1 O LEU E 144 N GLY E 115 SHEET 1 AA3 6 ASP D 38 VAL D 46 0 SHEET 2 AA3 6 GLN D 49 ASP D 57 -1 O ILE D 55 N TYR D 40 SHEET 3 AA3 6 ARG D 2 GLY D 10 1 N TYR D 4 O MET D 52 SHEET 4 AA3 6 GLY D 77 SER D 83 1 O ALA D 79 N VAL D 7 SHEET 5 AA3 6 MET D 111 ASN D 116 1 O ASN D 116 N TYR D 82 SHEET 6 AA3 6 ALA D 142 GLU D 145 1 O LEU D 144 N GLY D 115 SHEET 1 AA4 6 ASP F 38 VAL F 46 0 SHEET 2 AA4 6 GLN F 49 ASP F 57 -1 O ILE F 55 N TYR F 40 SHEET 3 AA4 6 ARG F 2 GLY F 10 1 N TYR F 4 O MET F 52 SHEET 4 AA4 6 GLY F 77 SER F 83 1 O ALA F 79 N VAL F 7 SHEET 5 AA4 6 MET F 111 ASN F 116 1 O ASN F 116 N TYR F 82 SHEET 6 AA4 6 ALA F 142 GLU F 145 1 O LEU F 144 N GLY F 115 SSBOND 1 CYS A 258 CYS A 290 1555 1555 2.19 SSBOND 2 CYS B 258 CYS B 290 1555 1555 2.18 LINK OG1 THR C 35 MG MG C 202 1555 1555 1.73 LINK O3G GNP C 201 MG MG C 202 1555 1555 2.22 LINK O2B GNP C 201 MG MG C 202 1555 1555 2.27 LINK MG MG C 202 O HOH C 301 1555 1555 2.60 LINK MG MG C 202 O HOH C 303 1555 1555 1.94 LINK O3G GNP D 201 MG MG D 202 1555 1555 2.11 LINK O2B GNP D 201 MG MG D 202 1555 1555 2.03 LINK MG MG D 202 O HOH D 303 1555 1555 2.17 LINK MG MG D 202 O HOH D 305 1555 1555 2.24 LINK OG1 THR E 35 MG MG E 202 1555 1555 2.40 LINK O3G GNP E 201 MG MG E 202 1555 1555 2.07 LINK O2B GNP E 201 MG MG E 202 1555 1555 2.23 LINK MG MG E 202 O HOH E 302 1555 1555 2.31 LINK MG MG E 202 O HOH E 303 1555 1555 1.98 LINK OG1 THR F 35 MG MG F 202 1555 1555 1.77 LINK O3G GNP F 201 MG MG F 202 1555 1555 2.30 LINK O2B GNP F 201 MG MG F 202 1555 1555 2.01 LINK MG MG F 202 O HOH F 301 1555 1555 2.44 SITE 1 AC1 24 GLY C 12 GLY C 13 VAL C 14 GLY C 15 SITE 2 AC1 24 LYS C 16 SER C 17 ALA C 18 PHE C 28 SITE 3 AC1 24 VAL C 29 GLU C 30 TYR C 32 PRO C 34 SITE 4 AC1 24 THR C 35 ALA C 59 GLY C 60 ASN C 116 SITE 5 AC1 24 LYS C 117 ASP C 119 SER C 147 ALA C 148 SITE 6 AC1 24 LYS C 149 MG C 202 HOH C 301 HOH C 303 SITE 1 AC2 6 SER C 17 THR C 35 ASP C 57 GNP C 201 SITE 2 AC2 6 HOH C 301 HOH C 303 SITE 1 AC3 24 GLY D 12 GLY D 13 VAL D 14 GLY D 15 SITE 2 AC3 24 LYS D 16 SER D 17 ALA D 18 PHE D 28 SITE 3 AC3 24 VAL D 29 GLU D 30 TYR D 32 PRO D 34 SITE 4 AC3 24 THR D 35 ALA D 59 GLY D 60 ASN D 116 SITE 5 AC3 24 LYS D 117 ASP D 119 LEU D 120 SER D 147 SITE 6 AC3 24 ALA D 148 MG D 202 HOH D 303 HOH D 305 SITE 1 AC4 5 SER D 17 THR D 35 GNP D 201 HOH D 303 SITE 2 AC4 5 HOH D 305 SITE 1 AC5 24 GLY E 13 VAL E 14 GLY E 15 LYS E 16 SITE 2 AC5 24 SER E 17 ALA E 18 PHE E 28 VAL E 29 SITE 3 AC5 24 GLU E 30 LYS E 31 TYR E 32 PRO E 34 SITE 4 AC5 24 THR E 35 ALA E 59 GLY E 60 ASN E 116 SITE 5 AC5 24 LYS E 117 ASP E 119 SER E 147 ALA E 148 SITE 6 AC5 24 LYS E 149 MG E 202 HOH E 302 HOH E 303 SITE 1 AC6 6 SER E 17 THR E 35 ASP E 57 GNP E 201 SITE 2 AC6 6 HOH E 302 HOH E 303 SITE 1 AC7 23 GLY F 13 GLY F 15 LYS F 16 SER F 17 SITE 2 AC7 23 ALA F 18 PHE F 28 VAL F 29 GLU F 30 SITE 3 AC7 23 TYR F 32 PRO F 34 THR F 35 ALA F 59 SITE 4 AC7 23 GLY F 60 ASN F 116 LYS F 117 ASP F 119 SITE 5 AC7 23 LEU F 120 SER F 147 ALA F 148 LYS F 149 SITE 6 AC7 23 MG F 202 HOH F 301 HOH F 303 SITE 1 AC8 5 SER F 17 THR F 35 GNP F 201 HOH F 301 SITE 2 AC8 5 HOH F 303 CRYST1 171.032 54.107 203.110 90.00 109.51 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005847 0.000000 0.002072 0.00000 SCALE2 0.000000 0.018482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005223 0.00000