HEADER TRANSPORT PROTEIN 19-SEP-19 6KYL TITLE CRYSTAL STRUCTURE OF PHOSPHATIDIC ACID TRANSPORTER UPS1/MDM35 IN TITLE 2 COMPLEX WITH (2R)-3-(PHOSPHONOOXY)PROPANE-1,2-DIYL DIHEXANOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY PROTEIN 35; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN UPS1, MITOCHONDRIAL; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: UNPROCESSED MGM1 PROTEIN 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: MDM35, YKL053C-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_COMMON: YEAST; SOURCE 11 ORGANISM_TAXID: 559292; SOURCE 12 GENE: UPS1, YLR193C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPID TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LU,K.C.CHAN,Y.ZHAI,J.FAN,F.SUN REVDAT 4 22-NOV-23 6KYL 1 REMARK REVDAT 3 09-SEP-20 6KYL 1 JRNL REVDAT 2 02-SEP-20 6KYL 1 JRNL REVDAT 1 02-OCT-19 6KYL 0 SPRSDE 02-OCT-19 6KYL 5JQO JRNL AUTH J.LU,C.CHAN,L.YU,J.FAN,F.SUN,Y.ZHAI JRNL TITL MOLECULAR MECHANISM OF MITOCHONDRIAL PHOSPHATIDATE TRANSFER JRNL TITL 2 BY UPS1. JRNL REF COMMUN BIOL V. 3 468 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32843686 JRNL DOI 10.1038/S42003-020-01121-X REMARK 2 REMARK 2 RESOLUTION. 3.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 7750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.289 REMARK 3 R VALUE (WORKING SET) : 0.287 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0700 - 6.4437 0.99 1210 138 0.2919 0.3316 REMARK 3 2 6.4437 - 5.1169 1.00 1215 132 0.3121 0.2986 REMARK 3 3 5.1169 - 4.4707 1.00 1194 131 0.2537 0.2596 REMARK 3 4 4.4707 - 4.0622 1.00 1177 132 0.2654 0.3036 REMARK 3 5 4.0622 - 3.7712 1.00 1191 131 0.3072 0.3077 REMARK 3 6 3.7712 - 3.5500 0.82 987 112 0.3042 0.3855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.6368 45.9889 -9.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.2932 T22: 0.3012 REMARK 3 T33: 0.1446 T12: -0.3710 REMARK 3 T13: -0.0573 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 0.3154 L22: 0.3172 REMARK 3 L33: 0.5652 L12: 0.3655 REMARK 3 L13: -0.4426 L23: -0.4436 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0168 S13: 0.0356 REMARK 3 S21: -0.0013 S22: 0.0070 S23: 0.0393 REMARK 3 S31: -0.0013 S32: -0.0105 S33: -0.0164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8015 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.549 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 30%-32% V/V REMARK 280 TACSIMATE, PH7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.65950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.32975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.98925 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 ILE A 4 REMARK 465 MET A 5 REMARK 465 LYS A 34 REMARK 465 GLY A 35 REMARK 465 LYS A 36 REMARK 465 SER A 37 REMARK 465 VAL A 38 REMARK 465 GLU A 39 REMARK 465 PHE A 75 REMARK 465 GLU A 76 REMARK 465 ASN A 77 REMARK 465 GLY A 78 REMARK 465 GLY A 79 REMARK 465 LYS A 80 REMARK 465 LEU A 81 REMARK 465 LYS A 82 REMARK 465 GLU A 83 REMARK 465 VAL A 84 REMARK 465 ASP A 85 REMARK 465 LYS A 86 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLN B -2 REMARK 465 ASP B -1 REMARK 465 LEU B 62 REMARK 465 PRO B 63 REMARK 465 THR B 64 REMARK 465 TRP B 65 REMARK 465 VAL B 66 REMARK 465 LYS B 67 REMARK 465 PRO B 68 REMARK 465 PHE B 69 REMARK 465 LEU B 70 REMARK 465 ARG B 71 REMARK 465 GLY B 72 REMARK 465 ILE B 73 REMARK 465 ASP B 115 REMARK 465 LEU B 167 REMARK 465 GLU B 168 REMARK 465 GLU B 169 REMARK 465 ALA B 170 REMARK 465 ARG B 171 REMARK 465 ASN B 172 REMARK 465 PRO B 173 REMARK 465 GLN B 174 REMARK 465 PHE B 175 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 ASN C 3 REMARK 465 ILE C 4 REMARK 465 LEU C 33 REMARK 465 LYS C 34 REMARK 465 GLY C 35 REMARK 465 LYS C 36 REMARK 465 SER C 37 REMARK 465 VAL C 38 REMARK 465 GLU C 39 REMARK 465 PHE C 75 REMARK 465 GLU C 76 REMARK 465 ASN C 77 REMARK 465 GLY C 78 REMARK 465 GLY C 79 REMARK 465 LYS C 80 REMARK 465 LEU C 81 REMARK 465 LYS C 82 REMARK 465 GLU C 83 REMARK 465 VAL C 84 REMARK 465 ASP C 85 REMARK 465 LYS C 86 REMARK 465 MET D -13 REMARK 465 GLY D -12 REMARK 465 SER D -11 REMARK 465 SER D -10 REMARK 465 HIS D -9 REMARK 465 HIS D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 SER D -3 REMARK 465 GLN D -2 REMARK 465 ASP D -1 REMARK 465 VAL D 66 REMARK 465 LYS D 67 REMARK 465 PRO D 68 REMARK 465 PHE D 69 REMARK 465 LEU D 70 REMARK 465 ARG D 71 REMARK 465 GLY D 72 REMARK 465 LEU D 167 REMARK 465 GLU D 168 REMARK 465 GLU D 169 REMARK 465 ALA D 170 REMARK 465 ARG D 171 REMARK 465 ASN D 172 REMARK 465 PRO D 173 REMARK 465 GLN D 174 REMARK 465 PHE D 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LEU A 33 CG CD1 CD2 REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 PRO B 0 CG CD REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 ASP B 14 CG OD1 OD2 REMARK 470 PHE B 15 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 18 CG1 CG2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 GLN B 46 CG CD OE1 NE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 THR B 74 OG1 CG2 REMARK 470 GLN B 113 CG CD OE1 NE2 REMARK 470 PHE B 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 116 OG REMARK 470 THR B 121 OG1 CG2 REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 133 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 134 CG OD1 ND2 REMARK 470 MET B 135 CG SD CE REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 GLU C 30 CG CD OE1 OE2 REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 ASN C 40 CG OD1 ND2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 LYS C 59 CG CD CE NZ REMARK 470 GLN C 60 CG CD OE1 NE2 REMARK 470 GLU C 68 CG CD OE1 OE2 REMARK 470 GLU C 72 CG CD OE1 OE2 REMARK 470 PRO D 0 CG CD REMARK 470 LEU D 4 CG CD1 CD2 REMARK 470 LYS D 6 CG CD CE NZ REMARK 470 ASP D 14 CG OD1 OD2 REMARK 470 PHE D 15 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP D 45 CG OD1 OD2 REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 LEU D 62 CG CD1 CD2 REMARK 470 THR D 64 OG1 CG2 REMARK 470 TRP D 65 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 65 CZ3 CH2 REMARK 470 ILE D 73 CG1 CG2 CD1 REMARK 470 GLU D 75 CG CD OE1 OE2 REMARK 470 ASN D 88 CG OD1 ND2 REMARK 470 GLN D 113 CG CD OE1 NE2 REMARK 470 PHE D 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP D 115 CG OD1 OD2 REMARK 470 SER D 116 OG REMARK 470 PHE D 133 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN D 134 CG OD1 ND2 REMARK 470 MET D 135 CG SD CE REMARK 470 ILE D 137 CG1 CG2 CD1 REMARK 470 LYS D 140 CG CD CE NZ REMARK 470 ARG D 146 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 157 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 6 O TYR D 26 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 42 41.91 -92.19 REMARK 500 LYS A 59 -71.09 -48.99 REMARK 500 LYS C 59 -71.19 -52.36 REMARK 500 GLU C 72 -168.56 -126.75 REMARK 500 SER D 131 -86.30 -83.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 44E B 201 REMARK 610 44E D 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 44E B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 44E D 201 DBREF 6KYL A 1 86 UNP O60200 MDM35_YEAST 1 86 DBREF 6KYL B 1 175 UNP Q05776 UPS1_YEAST 1 175 DBREF 6KYL C 1 86 UNP O60200 MDM35_YEAST 1 86 DBREF 6KYL D 1 175 UNP Q05776 UPS1_YEAST 1 175 SEQADV 6KYL MET B -13 UNP Q05776 EXPRESSION TAG SEQADV 6KYL GLY B -12 UNP Q05776 EXPRESSION TAG SEQADV 6KYL SER B -11 UNP Q05776 EXPRESSION TAG SEQADV 6KYL SER B -10 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS B -9 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS B -8 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS B -7 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS B -6 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS B -5 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS B -4 UNP Q05776 EXPRESSION TAG SEQADV 6KYL SER B -3 UNP Q05776 EXPRESSION TAG SEQADV 6KYL GLN B -2 UNP Q05776 EXPRESSION TAG SEQADV 6KYL ASP B -1 UNP Q05776 EXPRESSION TAG SEQADV 6KYL PRO B 0 UNP Q05776 EXPRESSION TAG SEQADV 6KYL MET D -13 UNP Q05776 EXPRESSION TAG SEQADV 6KYL GLY D -12 UNP Q05776 EXPRESSION TAG SEQADV 6KYL SER D -11 UNP Q05776 EXPRESSION TAG SEQADV 6KYL SER D -10 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS D -9 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS D -8 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS D -7 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS D -6 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS D -5 UNP Q05776 EXPRESSION TAG SEQADV 6KYL HIS D -4 UNP Q05776 EXPRESSION TAG SEQADV 6KYL SER D -3 UNP Q05776 EXPRESSION TAG SEQADV 6KYL GLN D -2 UNP Q05776 EXPRESSION TAG SEQADV 6KYL ASP D -1 UNP Q05776 EXPRESSION TAG SEQADV 6KYL PRO D 0 UNP Q05776 EXPRESSION TAG SEQRES 1 A 86 MET GLY ASN ILE MET SER ALA SER PHE ALA PRO GLU CYS SEQRES 2 A 86 THR ASP LEU LYS THR LYS TYR ASP SER CYS PHE ASN GLU SEQRES 3 A 86 TRP TYR SER GLU LYS PHE LEU LYS GLY LYS SER VAL GLU SEQRES 4 A 86 ASN GLU CYS SER LYS GLN TRP TYR ALA TYR THR THR CYS SEQRES 5 A 86 VAL ASN ALA ALA LEU VAL LYS GLN GLY ILE LYS PRO ALA SEQRES 6 A 86 LEU ASP GLU ALA ARG GLU GLU ALA PRO PHE GLU ASN GLY SEQRES 7 A 86 GLY LYS LEU LYS GLU VAL ASP LYS SEQRES 1 B 189 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 189 PRO MET VAL LEU LEU HIS LYS SER THR HIS ILE PHE PRO SEQRES 3 B 189 THR ASP PHE ALA SER VAL SER ARG ALA PHE PHE ASN ARG SEQRES 4 B 189 TYR PRO ASN PRO TYR SER PRO HIS VAL LEU SER ILE ASP SEQRES 5 B 189 THR ILE SER ARG ASN VAL ASP GLN GLU GLY ASN LEU ARG SEQRES 6 B 189 THR THR ARG LEU LEU LYS LYS SER GLY LYS LEU PRO THR SEQRES 7 B 189 TRP VAL LYS PRO PHE LEU ARG GLY ILE THR GLU THR TRP SEQRES 8 B 189 ILE ILE GLU VAL SER VAL VAL ASN PRO ALA ASN SER THR SEQRES 9 B 189 MET LYS THR TYR THR ARG ASN LEU ASP HIS THR GLY ILE SEQRES 10 B 189 MET LYS VAL GLU GLU TYR THR THR TYR GLN PHE ASP SER SEQRES 11 B 189 ALA THR SER SER THR ILE ALA ASP SER ARG VAL LYS PHE SEQRES 12 B 189 SER SER GLY PHE ASN MET GLY ILE LYS SER LYS VAL GLU SEQRES 13 B 189 ASP TRP SER ARG THR LYS PHE ASP GLU ASN VAL LYS LYS SEQRES 14 B 189 SER ARG MET GLY MET ALA PHE VAL ILE GLN LYS LEU GLU SEQRES 15 B 189 GLU ALA ARG ASN PRO GLN PHE SEQRES 1 C 86 MET GLY ASN ILE MET SER ALA SER PHE ALA PRO GLU CYS SEQRES 2 C 86 THR ASP LEU LYS THR LYS TYR ASP SER CYS PHE ASN GLU SEQRES 3 C 86 TRP TYR SER GLU LYS PHE LEU LYS GLY LYS SER VAL GLU SEQRES 4 C 86 ASN GLU CYS SER LYS GLN TRP TYR ALA TYR THR THR CYS SEQRES 5 C 86 VAL ASN ALA ALA LEU VAL LYS GLN GLY ILE LYS PRO ALA SEQRES 6 C 86 LEU ASP GLU ALA ARG GLU GLU ALA PRO PHE GLU ASN GLY SEQRES 7 C 86 GLY LYS LEU LYS GLU VAL ASP LYS SEQRES 1 D 189 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 D 189 PRO MET VAL LEU LEU HIS LYS SER THR HIS ILE PHE PRO SEQRES 3 D 189 THR ASP PHE ALA SER VAL SER ARG ALA PHE PHE ASN ARG SEQRES 4 D 189 TYR PRO ASN PRO TYR SER PRO HIS VAL LEU SER ILE ASP SEQRES 5 D 189 THR ILE SER ARG ASN VAL ASP GLN GLU GLY ASN LEU ARG SEQRES 6 D 189 THR THR ARG LEU LEU LYS LYS SER GLY LYS LEU PRO THR SEQRES 7 D 189 TRP VAL LYS PRO PHE LEU ARG GLY ILE THR GLU THR TRP SEQRES 8 D 189 ILE ILE GLU VAL SER VAL VAL ASN PRO ALA ASN SER THR SEQRES 9 D 189 MET LYS THR TYR THR ARG ASN LEU ASP HIS THR GLY ILE SEQRES 10 D 189 MET LYS VAL GLU GLU TYR THR THR TYR GLN PHE ASP SER SEQRES 11 D 189 ALA THR SER SER THR ILE ALA ASP SER ARG VAL LYS PHE SEQRES 12 D 189 SER SER GLY PHE ASN MET GLY ILE LYS SER LYS VAL GLU SEQRES 13 D 189 ASP TRP SER ARG THR LYS PHE ASP GLU ASN VAL LYS LYS SEQRES 14 D 189 SER ARG MET GLY MET ALA PHE VAL ILE GLN LYS LEU GLU SEQRES 15 D 189 GLU ALA ARG ASN PRO GLN PHE HET 44E B 201 22 HET 44E D 201 22 HETNAM 44E (2R)-3-(PHOSPHONOOXY)PROPANE-1,2-DIYL DIHEXANOATE FORMUL 5 44E 2(C15 H29 O8 P) HELIX 1 AA1 ALA A 10 GLU A 12 5 3 HELIX 2 AA2 CYS A 13 LYS A 31 1 19 HELIX 3 AA3 CYS A 42 ARG A 70 1 29 HELIX 4 AA4 ASP B 14 ASN B 24 1 11 HELIX 5 AA5 GLY B 132 LYS B 166 1 35 HELIX 6 AA6 ALA C 10 GLU C 12 5 3 HELIX 7 AA7 CYS C 13 GLU C 30 1 18 HELIX 8 AA8 SER C 43 ARG C 70 1 28 HELIX 9 AA9 ASP D 14 ASN D 24 1 11 HELIX 10 AB1 GLY D 132 LYS D 166 1 35 SHEET 1 AA1 7 MET B 1 PHE B 11 0 SHEET 2 AA1 7 THR B 121 SER B 131 -1 O THR B 121 N PHE B 11 SHEET 3 AA1 7 MET B 104 GLN B 113 -1 N LYS B 105 O SER B 130 SHEET 4 AA1 7 THR B 90 ASN B 97 -1 N MET B 91 O TYR B 112 SHEET 5 AA1 7 GLU B 75 ASN B 85 -1 N ILE B 79 O ARG B 96 SHEET 6 AA1 7 LEU B 50 SER B 59 -1 N ARG B 54 O GLU B 80 SHEET 7 AA1 7 VAL B 34 VAL B 44 -1 N ASP B 38 O LEU B 55 SHEET 1 AA2 7 VAL D 2 PHE D 11 0 SHEET 2 AA2 7 SER D 120 SER D 130 -1 O THR D 121 N PHE D 11 SHEET 3 AA2 7 LYS D 105 ASP D 115 -1 N ASP D 115 O SER D 120 SHEET 4 AA2 7 THR D 90 ASN D 97 -1 N MET D 91 O TYR D 112 SHEET 5 AA2 7 GLU D 75 ASN D 85 -1 N ILE D 79 O ARG D 96 SHEET 6 AA2 7 LEU D 50 SER D 59 -1 N ARG D 54 O GLU D 80 SHEET 7 AA2 7 VAL D 34 VAL D 44 -1 N ASP D 38 O LEU D 55 SSBOND 1 CYS A 13 CYS A 52 1555 1555 2.03 SSBOND 2 CYS A 23 CYS A 42 1555 1555 2.03 SSBOND 3 CYS C 13 CYS C 52 1555 1555 2.03 SSBOND 4 CYS C 23 CYS C 42 1555 1555 2.02 CISPEP 1 TYR B 26 PRO B 27 0 -1.46 CISPEP 2 TYR D 26 PRO D 27 0 -3.55 SITE 1 AC1 8 HIS B 33 LYS B 58 SER B 59 THR B 76 SITE 2 AC1 8 ILE B 78 ASN B 97 MET B 104 ASN D 152 SITE 1 AC2 9 ASN B 152 HIS D 33 LYS D 58 GLY D 60 SITE 2 AC2 9 THR D 74 THR D 76 ILE D 78 ASN D 97 SITE 3 AC2 9 MET D 104 CRYST1 90.140 90.140 81.319 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012297 0.00000