HEADER HYDROLASE 23-SEP-19 6KZA TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF THE INTERACTION DOMAINS OF E. COLI TITLE 2 DNAB HELICASE AND DNAC HELICASE LOADER COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATIVE DNA HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA REPLICATION PROTEIN DNAC; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: N-TERMINAL DOMAIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DNAB, EVY21_06600; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 GENE: DNAC, EYX85_09815, EYY00_08890, EYY22_09440; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICASE, DNAB, HELICASE LOADER PROTEIN, DNAC, STRUCTURAL GENOMICS, KEYWDS 2 REPLICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NAGATA,A.OKADA,J.OHTSUKA,T.OHKURI,Y.AKAMA,Y.SAKIYAMA,E.MIYAZAKI, AUTHOR 2 S.HORITA,T.KATAYAMA,T.UEDA,M.TANOKURA REVDAT 3 27-MAR-24 6KZA 1 REMARK REVDAT 2 22-JAN-20 6KZA 1 JRNL REVDAT 1 20-NOV-19 6KZA 0 JRNL AUTH K.NAGATA,A.OKADA,J.OHTSUKA,T.OHKURI,Y.AKAMA,Y.SAKIYAMA, JRNL AUTH 2 E.MIYAZAKI,S.HORITA,T.KATAYAMA,T.UEDA,M.TANOKURA JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF THE INTERACTION DOMAINS JRNL TITL 2 OF ESCHERICHIA COLI DNAB HELICASE AND DNAC HELICASE LOADER: JRNL TITL 3 STRUCTURAL BASIS IMPLYING A DISTORTION-ACCUMULATION JRNL TITL 4 MECHANISM FOR THE DNAB RING OPENING CAUSED BY DNAC BINDING. JRNL REF J.BIOCHEM. V. 167 1 2020 JRNL REFN ISSN 0021-924X JRNL PMID 31665315 JRNL DOI 10.1093/JB/MVZ087 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.520 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.456 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 58.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5387 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5297 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7263 ; 0.829 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12155 ; 0.701 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 4.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;30.657 ;24.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1010 ;13.915 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;12.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 819 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6128 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1194 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 470 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4120 -29.4770 -39.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.6153 T22: 0.0467 REMARK 3 T33: 0.3073 T12: -0.0610 REMARK 3 T13: 0.0957 T23: -0.0798 REMARK 3 L TENSOR REMARK 3 L11: 1.7923 L22: 1.6944 REMARK 3 L33: 2.8826 L12: 0.7770 REMARK 3 L13: 0.1594 L23: 0.4342 REMARK 3 S TENSOR REMARK 3 S11: -0.1117 S12: -0.0014 S13: -0.0354 REMARK 3 S21: -0.3976 S22: -0.0757 S23: 0.3732 REMARK 3 S31: 0.6313 S32: -0.1823 S33: 0.1875 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 180 B 471 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2670 0.1400 -18.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.1229 REMARK 3 T33: 0.1213 T12: -0.0372 REMARK 3 T13: -0.0260 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.2637 L22: 1.9754 REMARK 3 L33: 1.0954 L12: -0.3190 REMARK 3 L13: -0.1974 L23: 0.4659 REMARK 3 S TENSOR REMARK 3 S11: -0.1342 S12: -0.1124 S13: 0.1753 REMARK 3 S21: 0.1680 S22: 0.0424 S23: -0.1902 REMARK 3 S31: -0.1229 S32: 0.3186 S33: 0.0917 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 50 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9040 -40.7950 -27.6520 REMARK 3 T TENSOR REMARK 3 T11: 0.6601 T22: 0.3437 REMARK 3 T33: 0.6275 T12: -0.3115 REMARK 3 T13: 0.1004 T23: -0.1379 REMARK 3 L TENSOR REMARK 3 L11: 2.3140 L22: 4.6579 REMARK 3 L33: 15.2917 L12: 0.1105 REMARK 3 L13: 0.1644 L23: -4.0910 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: -0.3258 S13: -0.5111 REMARK 3 S21: -0.3121 S22: 0.3014 S23: 0.6927 REMARK 3 S31: 0.2134 S32: -0.9485 S33: -0.3878 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 52 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3950 9.9800 -35.1140 REMARK 3 T TENSOR REMARK 3 T11: 0.7610 T22: 0.5046 REMARK 3 T33: 0.5635 T12: -0.2360 REMARK 3 T13: 0.0496 T23: 0.1299 REMARK 3 L TENSOR REMARK 3 L11: 6.3024 L22: 2.8844 REMARK 3 L33: 3.1911 L12: -1.8598 REMARK 3 L13: -1.2068 L23: 0.0673 REMARK 3 S TENSOR REMARK 3 S11: 0.1156 S12: 0.7809 S13: 0.2166 REMARK 3 S21: 0.0373 S22: -0.0806 S23: -0.4062 REMARK 3 S31: -0.4355 S32: 0.6722 S33: -0.0350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES BUFFER, PH 7.3, 23% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.78000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.77500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.78000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.78000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.78000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.77500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.78000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.78000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.77500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 471 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASN C 3 REMARK 465 MET C 51 REMARK 465 LYS C 52 REMARK 465 MET C 53 REMARK 465 GLN C 54 REMARK 465 ARG C 55 REMARK 465 THR C 56 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ASN D 3 REMARK 465 VAL D 4 REMARK 465 MET D 53 REMARK 465 GLN D 54 REMARK 465 ARG D 55 REMARK 465 THR D 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 180 CB CG CD CE NZ REMARK 470 LYS B 180 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 252 139.34 -171.11 REMARK 500 THR A 286 -60.84 -126.47 REMARK 500 TYR A 344 141.12 -8.06 REMARK 500 SER A 407 34.84 -90.13 REMARK 500 ALA A 464 43.62 -98.58 REMARK 500 ASP B 202 78.20 -106.13 REMARK 500 TYR B 344 93.31 63.35 REMARK 500 SER B 407 39.61 -92.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 343 TYR A 344 -142.03 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6KZA A 180 471 UNP A0A4Q4AUR5_ECOLX DBREF2 6KZA A A0A4Q4AUR5 180 471 DBREF1 6KZA B 180 471 UNP A0A4Q4AUR5_ECOLX DBREF2 6KZA B A0A4Q4AUR5 180 471 DBREF1 6KZA C 1 56 UNP A0A4T2UA22_ECOLX DBREF2 6KZA C A0A4T2UA22 1 56 DBREF1 6KZA D 1 56 UNP A0A4T2UA22_ECOLX DBREF2 6KZA D A0A4T2UA22 1 56 SEQRES 1 A 292 LYS ASN ILE ALA ASP VAL LEU ASP ALA THR VAL ALA ARG SEQRES 2 A 292 ILE GLU GLN LEU PHE GLN GLN PRO HIS ASP GLY VAL THR SEQRES 3 A 292 GLY VAL ASN THR GLY TYR ASP ASP LEU ASN LYS LYS THR SEQRES 4 A 292 ALA GLY LEU GLN PRO SER ASP LEU ILE ILE VAL ALA ALA SEQRES 5 A 292 ARG PRO SER MET GLY LYS THR THR PHE ALA MET ASN LEU SEQRES 6 A 292 VAL GLU ASN ALA ALA MET LEU GLN ASP LYS PRO VAL LEU SEQRES 7 A 292 ILE PHE SER LEU GLU MET PRO SER GLU GLN ILE MET MET SEQRES 8 A 292 ARG SER LEU ALA SER LEU SER ARG VAL ASP GLN THR LYS SEQRES 9 A 292 ILE ARG THR GLY GLN LEU ASP ASP GLU ASP TRP ALA ARG SEQRES 10 A 292 ILE SER GLY THR MET GLY ILE LEU LEU GLU LYS ARG ASN SEQRES 11 A 292 ILE TYR ILE ASP ASP SER SER GLY LEU THR PRO THR GLU SEQRES 12 A 292 VAL ARG SER ARG ALA ARG ARG ILE ALA ARG GLU HIS GLY SEQRES 13 A 292 GLY ILE GLY LEU ILE MET ILE ASP TYR LEU GLN LEU MET SEQRES 14 A 292 ARG VAL PRO ALA LEU SER ASP ASN ARG THR LEU GLU ILE SEQRES 15 A 292 ALA GLU ILE SER ARG SER LEU LYS ALA LEU ALA LYS GLU SEQRES 16 A 292 LEU ASN VAL PRO VAL VAL ALA LEU SER GLN LEU ASN ARG SEQRES 17 A 292 SER LEU GLU GLN ARG ALA ASP LYS ARG PRO VAL ASN SER SEQRES 18 A 292 ASP LEU ARG GLU SER GLY SER ILE GLU GLN ASP ALA ASP SEQRES 19 A 292 LEU ILE MET PHE ILE TYR ARG ASP GLU VAL TYR HIS GLU SEQRES 20 A 292 ASN SER ASP LEU LYS GLY ILE ALA GLU ILE ILE ILE GLY SEQRES 21 A 292 LYS GLN ARG ASN GLY PRO ILE GLY THR VAL ARG LEU THR SEQRES 22 A 292 PHE ASN GLY GLN TRP SER ARG PHE ASP ASN TYR ALA GLY SEQRES 23 A 292 PRO GLN TYR ASP ASP GLU SEQRES 1 B 292 LYS ASN ILE ALA ASP VAL LEU ASP ALA THR VAL ALA ARG SEQRES 2 B 292 ILE GLU GLN LEU PHE GLN GLN PRO HIS ASP GLY VAL THR SEQRES 3 B 292 GLY VAL ASN THR GLY TYR ASP ASP LEU ASN LYS LYS THR SEQRES 4 B 292 ALA GLY LEU GLN PRO SER ASP LEU ILE ILE VAL ALA ALA SEQRES 5 B 292 ARG PRO SER MET GLY LYS THR THR PHE ALA MET ASN LEU SEQRES 6 B 292 VAL GLU ASN ALA ALA MET LEU GLN ASP LYS PRO VAL LEU SEQRES 7 B 292 ILE PHE SER LEU GLU MET PRO SER GLU GLN ILE MET MET SEQRES 8 B 292 ARG SER LEU ALA SER LEU SER ARG VAL ASP GLN THR LYS SEQRES 9 B 292 ILE ARG THR GLY GLN LEU ASP ASP GLU ASP TRP ALA ARG SEQRES 10 B 292 ILE SER GLY THR MET GLY ILE LEU LEU GLU LYS ARG ASN SEQRES 11 B 292 ILE TYR ILE ASP ASP SER SER GLY LEU THR PRO THR GLU SEQRES 12 B 292 VAL ARG SER ARG ALA ARG ARG ILE ALA ARG GLU HIS GLY SEQRES 13 B 292 GLY ILE GLY LEU ILE MET ILE ASP TYR LEU GLN LEU MET SEQRES 14 B 292 ARG VAL PRO ALA LEU SER ASP ASN ARG THR LEU GLU ILE SEQRES 15 B 292 ALA GLU ILE SER ARG SER LEU LYS ALA LEU ALA LYS GLU SEQRES 16 B 292 LEU ASN VAL PRO VAL VAL ALA LEU SER GLN LEU ASN ARG SEQRES 17 B 292 SER LEU GLU GLN ARG ALA ASP LYS ARG PRO VAL ASN SER SEQRES 18 B 292 ASP LEU ARG GLU SER GLY SER ILE GLU GLN ASP ALA ASP SEQRES 19 B 292 LEU ILE MET PHE ILE TYR ARG ASP GLU VAL TYR HIS GLU SEQRES 20 B 292 ASN SER ASP LEU LYS GLY ILE ALA GLU ILE ILE ILE GLY SEQRES 21 B 292 LYS GLN ARG ASN GLY PRO ILE GLY THR VAL ARG LEU THR SEQRES 22 B 292 PHE ASN GLY GLN TRP SER ARG PHE ASP ASN TYR ALA GLY SEQRES 23 B 292 PRO GLN TYR ASP ASP GLU SEQRES 1 C 56 MET LYS ASN VAL GLY ASP LEU MET GLN ARG LEU GLN LYS SEQRES 2 C 56 MET MET PRO ALA HIS ILE LYS PRO ALA PHE LYS THR GLY SEQRES 3 C 56 GLU GLU LEU LEU ALA TRP GLN LYS GLU GLN GLY ALA ILE SEQRES 4 C 56 ARG SER ALA ALA LEU GLU ARG GLU ASN ARG ALA MET LYS SEQRES 5 C 56 MET GLN ARG THR SEQRES 1 D 56 MET LYS ASN VAL GLY ASP LEU MET GLN ARG LEU GLN LYS SEQRES 2 D 56 MET MET PRO ALA HIS ILE LYS PRO ALA PHE LYS THR GLY SEQRES 3 D 56 GLU GLU LEU LEU ALA TRP GLN LYS GLU GLN GLY ALA ILE SEQRES 4 D 56 ARG SER ALA ALA LEU GLU ARG GLU ASN ARG ALA MET LYS SEQRES 5 D 56 MET GLN ARG THR HELIX 1 AA1 ASN A 181 GLN A 198 1 18 HELIX 2 AA2 TYR A 211 ALA A 219 1 9 HELIX 3 AA3 GLY A 236 LEU A 251 1 16 HELIX 4 AA4 PRO A 264 ARG A 278 1 15 HELIX 5 AA5 ASP A 280 THR A 286 1 7 HELIX 6 AA6 ASP A 290 ARG A 308 1 19 HELIX 7 AA7 THR A 319 HIS A 334 1 16 HELIX 8 AA8 TYR A 344 MET A 348 5 5 HELIX 9 AA9 VAL A 350 SER A 354 5 5 HELIX 10 AB1 ASN A 356 LEU A 375 1 20 HELIX 11 AB2 ASN A 386 ARG A 392 5 7 HELIX 12 AB3 VAL A 398 ARG A 403 5 6 HELIX 13 AB4 SER A 407 ALA A 412 1 6 HELIX 14 AB5 ARG A 420 HIS A 425 1 6 HELIX 15 AB6 ASN B 181 PHE B 197 1 17 HELIX 16 AB7 TYR B 211 ALA B 219 1 9 HELIX 17 AB8 ARG B 232 MET B 235 5 4 HELIX 18 AB9 GLY B 236 GLN B 252 1 17 HELIX 19 AC1 PRO B 264 ARG B 278 1 15 HELIX 20 AC2 ASP B 280 GLY B 287 1 8 HELIX 21 AC3 ASP B 290 ARG B 308 1 19 HELIX 22 AC4 THR B 319 HIS B 334 1 16 HELIX 23 AC5 TYR B 344 MET B 348 5 5 HELIX 24 AC6 VAL B 350 SER B 354 5 5 HELIX 25 AC7 ASN B 356 ASN B 376 1 21 HELIX 26 AC8 ASN B 386 ARG B 392 5 7 HELIX 27 AC9 VAL B 398 ARG B 403 5 6 HELIX 28 AD1 SER B 407 ALA B 412 1 6 HELIX 29 AD2 ARG B 420 HIS B 425 1 6 HELIX 30 AD3 GLY C 5 MET C 14 1 10 HELIX 31 AD4 THR C 25 ALA C 50 1 26 HELIX 32 AD5 ASP D 6 MET D 15 1 10 HELIX 33 AD6 THR D 25 ALA D 50 1 26 SHEET 1 AA1 9 ILE A 310 ASP A 313 0 SHEET 2 AA1 9 VAL A 256 PHE A 259 1 N ILE A 258 O TYR A 311 SHEET 3 AA1 9 LEU A 339 ILE A 342 1 O MET A 341 N PHE A 259 SHEET 4 AA1 9 VAL A 379 SER A 383 1 O VAL A 380 N ILE A 340 SHEET 5 AA1 9 LEU A 226 ALA A 230 1 N ILE A 227 O ALA A 381 SHEET 6 AA1 9 LEU A 414 TYR A 419 1 O LEU A 414 N ILE A 228 SHEET 7 AA1 9 ILE A 433 GLN A 441 -1 O ILE A 437 N PHE A 417 SHEET 8 AA1 9 GLY A 447 ASN A 454 -1 O VAL A 449 N ILE A 436 SHEET 9 AA1 9 ARG A 459 ASN A 462 -1 O ASP A 461 N THR A 452 SHEET 1 AA2 9 ILE B 310 ASP B 313 0 SHEET 2 AA2 9 VAL B 256 SER B 260 1 N ILE B 258 O TYR B 311 SHEET 3 AA2 9 LEU B 339 ASP B 343 1 O MET B 341 N PHE B 259 SHEET 4 AA2 9 VAL B 379 GLN B 384 1 O VAL B 380 N ILE B 340 SHEET 5 AA2 9 LEU B 226 ALA B 231 1 N ILE B 227 O ALA B 381 SHEET 6 AA2 9 LEU B 414 TYR B 419 1 O MET B 416 N ILE B 228 SHEET 7 AA2 9 ILE B 433 GLN B 441 -1 O ILE B 437 N PHE B 417 SHEET 8 AA2 9 GLY B 447 ASN B 454 -1 O VAL B 449 N ILE B 436 SHEET 9 AA2 9 ARG B 459 ASN B 462 -1 O ASP B 461 N THR B 452 CRYST1 121.560 121.560 105.550 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009474 0.00000