HEADER OXIDOREDUCTASE 28-SEP-19 6L1A TITLE CRYSTAL STRUCTURE OF P450BM3 WITH N-ENANTHOYL-L-PROLYL-L-PHENYLALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYTOCHROME P450/NADPH--P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOCHROME P450(BM-3),CYTOCHROME P450BM-3,FATTY ACID COMPND 5 MONOOXYGENASE,FLAVOCYTOCHROME P450 BM3; COMPND 6 EC: 1.14.14.1,1.6.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 ATCC: 14581; SOURCE 5 GENE: CYP102A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.SHOJI,K.YONEMURA REVDAT 3 22-NOV-23 6L1A 1 REMARK REVDAT 2 06-JAN-21 6L1A 1 JRNL REVDAT 1 30-SEP-20 6L1A 0 JRNL AUTH K.YONEMURA,S.ARIYASU,J.K.STANFIELD,K.SUZUKI,H.ONODA,C.KASAI, JRNL AUTH 2 H.SUGIMOTO,Y.AIBA,Y.WATANABE,O.SHOJI JRNL TITL SYSTEMATIC EVOLUTION OF DECOY MOLECULES FOR THE HIGHLY JRNL TITL 2 EFFICIENT HYDROXYLATION OF BENZENE AND SMALL ALKANES JRNL TITL 3 CATALYZED BY WILD-TYPE CYTOCHROME P450BM3 JRNL REF ACS CATALYSIS V. 10 9136 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.0C01951 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 93664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 374 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8084 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7473 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11031 ; 1.638 ; 1.695 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17417 ; 1.358 ; 1.610 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 973 ; 7.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 422 ;34.064 ;23.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1417 ;15.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;17.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 994 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9150 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1682 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6L1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300013987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 48.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 2.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.02 REMARK 200 STARTING MODEL: 5XA3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, 0.1% (V/V) DIMETHYL REMARK 280 SULFOXIDE, 0.1MM N-HEPTANOYL-L-PROLYL-L-PHENYLALANINE, MGCL, PEG REMARK 280 8000, PH 7.9, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.41400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.44450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.21350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.44450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.41400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.21350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -118.16 49.26 REMARK 500 PHE A 158 29.59 -152.50 REMARK 500 HIS A 171 136.75 -31.94 REMARK 500 ASP A 195 134.74 -38.46 REMARK 500 LYS A 349 125.16 -30.77 REMARK 500 ASP A 370 32.60 -90.07 REMARK 500 THR A 436 -124.08 -116.47 REMARK 500 LYS B 15 -121.63 50.65 REMARK 500 PHE B 158 29.65 -155.54 REMARK 500 HIS B 171 138.25 -39.23 REMARK 500 GLN B 229 50.67 -116.47 REMARK 500 GLU B 244 -72.18 -66.27 REMARK 500 THR B 268 -61.62 -96.37 REMARK 500 GLU B 344 -40.53 -131.82 REMARK 500 LYS B 349 120.37 -32.90 REMARK 500 ASP B 370 21.98 -76.99 REMARK 500 ARG B 378 -36.68 -38.96 REMARK 500 THR B 436 -126.58 -107.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 96.3 REMARK 620 3 HEM A 501 NB 86.4 88.7 REMARK 620 4 HEM A 501 NC 86.5 175.8 88.3 REMARK 620 5 HEM A 501 ND 97.6 90.3 176.0 92.4 REMARK 620 6 DMS A 502 S 178.4 84.4 92.2 92.7 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 98.2 REMARK 620 3 HEM A 501 NB 87.7 90.4 REMARK 620 4 HEM A 501 NC 86.3 175.1 88.0 REMARK 620 5 HEM A 501 ND 97.6 90.6 174.4 90.6 REMARK 620 6 DMS A 502 S 177.4 84.4 92.0 91.1 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 97.7 REMARK 620 3 HEM B 501 NB 85.5 89.5 REMARK 620 4 HEM B 501 NC 85.4 176.1 88.4 REMARK 620 5 HEM B 501 ND 96.5 90.2 178.0 91.9 REMARK 620 6 DMS B 502 S 176.0 84.5 91.2 92.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 99.0 REMARK 620 3 HEM B 501 NB 86.7 90.7 REMARK 620 4 HEM B 501 NC 85.5 175.3 88.4 REMARK 620 5 HEM B 501 ND 96.5 90.1 176.5 90.5 REMARK 620 6 DMS B 502 S 176.0 84.3 91.1 91.1 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OPF A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OPF B 504 DBREF 6L1A A 0 455 UNP P14779 CPXB_BACMB 1 456 DBREF 6L1A B 0 455 UNP P14779 CPXB_BACMB 1 456 SEQRES 1 A 456 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 A 456 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 A 456 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 A 456 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 A 456 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 A 456 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 A 456 VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP SEQRES 8 A 456 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 A 456 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 A 456 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 A 456 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 A 456 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 A 456 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 A 456 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 A 456 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 A 456 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 A 456 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 A 456 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 A 456 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 A 456 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 A 456 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 A 456 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 A 456 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 A 456 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 A 456 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 A 456 TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU SEQRES 27 A 456 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 A 456 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 A 456 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 A 456 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 A 456 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 A 456 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 A 456 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 A 456 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 A 456 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 A 456 LEU SEQRES 1 B 456 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 B 456 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 B 456 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 B 456 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 B 456 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 B 456 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 B 456 VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP SEQRES 8 B 456 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 B 456 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 B 456 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 B 456 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 B 456 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 B 456 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 B 456 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 B 456 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 B 456 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 B 456 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 B 456 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 B 456 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 B 456 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 B 456 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 B 456 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 B 456 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 B 456 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 B 456 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 B 456 TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU SEQRES 27 B 456 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 B 456 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 B 456 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 B 456 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 B 456 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 B 456 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 B 456 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 B 456 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 B 456 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 B 456 LEU HET HEM A 501 86 HET DMS A 502 4 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET OPF A 506 27 HET HEM B 501 86 HET DMS B 502 4 HET GOL B 503 6 HET OPF B 504 27 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM OPF (2S)-2-[[(2S)-1-HEPTANOYLPYRROLIDIN-2- HETNAM 2 OPF YL]CARBONYLAMINO]-3-PHENYL-PROPANOIC ACID HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN OPF N-ENANTHOYL-L-PROLYL-L-PHENYLALANINE FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 DMS 2(C2 H6 O S) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 8 OPF 2(C21 H30 N2 O4) FORMUL 13 HOH *414(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLU A 93 LEU A 104 1 12 HELIX 7 AA7 PRO A 105 GLN A 110 5 6 HELIX 8 AA8 ALA A 111 ARG A 132 1 22 HELIX 9 AA9 VAL A 141 ASN A 159 1 19 HELIX 10 AB1 ASN A 163 ARG A 167 5 5 HELIX 11 AB2 HIS A 171 LEU A 188 1 18 HELIX 12 AB3 ASP A 195 ALA A 197 5 3 HELIX 13 AB4 TYR A 198 GLY A 227 1 30 HELIX 14 AB5 ASP A 232 GLY A 240 1 9 HELIX 15 AB6 ASP A 250 ASN A 283 1 34 HELIX 16 AB7 ASN A 283 LEU A 298 1 16 HELIX 17 AB8 SER A 304 GLN A 310 1 7 HELIX 18 AB9 LEU A 311 TRP A 325 1 15 HELIX 19 AC1 ILE A 357 HIS A 361 1 5 HELIX 20 AC2 ASP A 363 GLY A 368 1 6 HELIX 21 AC3 ARG A 375 GLU A 380 5 6 HELIX 22 AC4 ASN A 381 ILE A 385 5 5 HELIX 23 AC5 ASN A 395 ALA A 399 5 5 HELIX 24 AC6 GLY A 402 HIS A 420 1 19 HELIX 25 AC7 PHE B 11 LYS B 15 5 5 HELIX 26 AC8 ASN B 16 ASN B 21 5 6 HELIX 27 AC9 LYS B 24 GLY B 37 1 14 HELIX 28 AD1 SER B 54 CYS B 62 1 9 HELIX 29 AD2 SER B 72 GLY B 83 1 12 HELIX 30 AD3 GLU B 93 LEU B 104 1 12 HELIX 31 AD4 PRO B 105 PHE B 107 5 3 HELIX 32 AD5 SER B 108 ARG B 132 1 25 HELIX 33 AD6 VAL B 141 ASN B 159 1 19 HELIX 34 AD7 ASN B 163 ARG B 167 5 5 HELIX 35 AD8 HIS B 171 LYS B 187 1 17 HELIX 36 AD9 LEU B 188 ARG B 190 5 3 HELIX 37 AE1 ASP B 195 ALA B 197 5 3 HELIX 38 AE2 TYR B 198 GLY B 227 1 30 HELIX 39 AE3 ASP B 232 GLY B 240 1 9 HELIX 40 AE4 ASP B 250 ASN B 283 1 34 HELIX 41 AE5 ASN B 283 LEU B 298 1 16 HELIX 42 AE6 SER B 304 LEU B 311 1 8 HELIX 43 AE7 LEU B 311 TRP B 325 1 15 HELIX 44 AE8 ILE B 357 HIS B 361 1 5 HELIX 45 AE9 ASP B 363 GLY B 368 1 6 HELIX 46 AF1 ARG B 375 GLU B 380 5 6 HELIX 47 AF2 ASN B 381 ILE B 385 5 5 HELIX 48 AF3 ASN B 395 ALA B 399 5 5 HELIX 49 AF4 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 AA1 5 PHE A 67 ASN A 70 -1 N ASP A 68 O TYR A 334 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O TYR A 345 N LEU A 341 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 ALA B 44 0 SHEET 2 AA5 5 ARG B 47 LEU B 52 -1 O TYR B 51 N PHE B 40 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O MET B 354 N ARG B 50 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 AA5 5 PHE B 67 ASN B 70 -1 N ASP B 68 O TYR B 334 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE AHEM A 501 1555 1555 2.31 LINK SG CYS A 400 FE BHEM A 501 1555 1555 2.28 LINK FE AHEM A 501 S DMS A 502 1555 1555 2.51 LINK FE BHEM A 501 S DMS A 502 1555 1555 2.54 LINK SG CYS B 400 FE AHEM B 501 1555 1555 2.32 LINK SG CYS B 400 FE BHEM B 501 1555 1555 2.30 LINK FE AHEM B 501 S DMS B 502 1555 1555 2.40 LINK FE BHEM B 501 S DMS B 502 1555 1555 2.43 SITE 1 AC1 28 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 28 ILE A 153 ALA A 264 THR A 268 THR A 269 SITE 3 AC1 28 LEU A 322 THR A 327 PHE A 331 PRO A 392 SITE 4 AC1 28 PHE A 393 GLY A 394 ARG A 398 ALA A 399 SITE 5 AC1 28 CYS A 400 ILE A 401 GLY A 402 PHE A 405 SITE 6 AC1 28 ALA A 406 DMS A 502 HOH A 626 HOH A 630 SITE 7 AC1 28 HOH A 671 HOH A 682 HOH A 709 HOH A 763 SITE 1 AC2 5 PHE A 87 ALA A 264 THR A 268 HEM A 501 SITE 2 AC2 5 OPF A 506 SITE 1 AC3 5 LYS A 391 GLY A 394 ASN A 395 GLY A 396 SITE 2 AC3 5 GLN A 403 SITE 1 AC4 4 ASP A 68 HIS A 92 LYS A 336 HOH A 623 SITE 1 AC5 8 TRP A 130 LEU A 133 ASN A 134 ALA A 135 SITE 2 AC5 8 ALA A 448 LYS A 449 SER A 450 HOH A 601 SITE 1 AC6 10 LEU A 20 LEU A 29 ARG A 47 TYR A 51 SITE 2 AC6 10 SER A 72 GLN A 73 ALA A 74 PHE A 87 SITE 3 AC6 10 ALA A 328 DMS A 502 SITE 1 AC7 30 LYS B 69 LEU B 75 LEU B 86 PHE B 87 SITE 2 AC7 30 TRP B 96 ILE B 153 ALA B 264 THR B 268 SITE 3 AC7 30 THR B 269 LEU B 322 THR B 327 ALA B 328 SITE 4 AC7 30 PHE B 331 PRO B 392 PHE B 393 GLY B 394 SITE 5 AC7 30 ARG B 398 ALA B 399 CYS B 400 ILE B 401 SITE 6 AC7 30 GLY B 402 PHE B 405 ALA B 406 DMS B 502 SITE 7 AC7 30 HOH B 618 HOH B 627 HOH B 638 HOH B 683 SITE 8 AC7 30 HOH B 698 HOH B 741 SITE 1 AC8 5 PHE B 87 ALA B 264 THR B 268 HEM B 501 SITE 2 AC8 5 OPF B 504 SITE 1 AC9 6 PRO A 196 VAL B 297 VAL B 299 GLN B 307 SITE 2 AC9 6 HOH B 642 HOH B 751 SITE 1 AD1 14 LEU B 20 VAL B 26 LEU B 29 ARG B 47 SITE 2 AD1 14 TYR B 51 SER B 72 GLN B 73 ALA B 74 SITE 3 AD1 14 PHE B 87 LEU B 188 ALA B 330 LEU B 437 SITE 4 AD1 14 DMS B 502 HOH B 667 CRYST1 58.828 128.427 148.889 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006716 0.00000