HEADER CHAPERONE 29-SEP-19 6L1E TITLE CRYSTAL STRUCTURE OF MIDDLE DOMAIN OF HSSRP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FACT COMPLEX SUBUNIT SSRP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SSRP1, FACT80; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE CHAPERONE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.LI,T.T.HU,Y.S.DOU,D.SU REVDAT 3 22-NOV-23 6L1E 1 REMARK REVDAT 2 20-JAN-21 6L1E 1 AUTHOR JRNL REVDAT 1 30-SEP-20 6L1E 0 JRNL AUTH H.Y.LI,T.T.HU,Y.S.DOU,D.SU JRNL TITL CRYSTAL STRUCTURE OF MIDDLE DOMAIN OF HSSRP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3000 - 3.5782 1.00 2688 125 0.1676 0.2000 REMARK 3 2 3.5782 - 2.8412 1.00 2533 158 0.1854 0.2003 REMARK 3 3 2.8412 - 2.4824 1.00 2512 148 0.2132 0.2724 REMARK 3 4 2.4824 - 2.2555 1.00 2515 134 0.2125 0.2671 REMARK 3 5 2.2555 - 2.0939 0.97 2414 140 0.2179 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1885 REMARK 3 ANGLE : 0.865 2536 REMARK 3 CHIRALITY : 0.055 273 REMARK 3 PLANARITY : 0.006 323 REMARK 3 DIHEDRAL : 12.378 1129 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4231 -6.2110 -2.9714 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.3312 REMARK 3 T33: 0.3361 T12: -0.0037 REMARK 3 T13: -0.0146 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.5619 L22: 0.3264 REMARK 3 L33: 0.8566 L12: -0.0002 REMARK 3 L13: -0.0834 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0497 S13: 0.0146 REMARK 3 S21: -0.0865 S22: 0.0181 S23: -0.0362 REMARK 3 S31: -0.0919 S32: 0.1981 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9676 -2.5371 13.7956 REMARK 3 T TENSOR REMARK 3 T11: 0.5282 T22: 0.4685 REMARK 3 T33: 0.7390 T12: -0.0348 REMARK 3 T13: 0.1252 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 0.1028 L22: 0.3137 REMARK 3 L33: 0.2118 L12: 0.0581 REMARK 3 L13: -0.1594 L23: -0.0834 REMARK 3 S TENSOR REMARK 3 S11: -0.2144 S12: -0.1754 S13: 0.5020 REMARK 3 S21: 0.9863 S22: -0.1083 S23: 1.3546 REMARK 3 S31: -0.5099 S32: -0.1840 S33: -0.0059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6830 -11.2188 -13.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.3153 REMARK 3 T33: 0.3198 T12: 0.0133 REMARK 3 T13: 0.0191 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.3797 L22: 0.1397 REMARK 3 L33: 1.1756 L12: 0.3754 REMARK 3 L13: 0.7051 L23: -0.3581 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.0370 S13: 0.0452 REMARK 3 S21: -0.0001 S22: -0.0284 S23: 0.0579 REMARK 3 S31: -0.0018 S32: 0.0362 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2597 -13.2799 -29.2728 REMARK 3 T TENSOR REMARK 3 T11: 0.4853 T22: 0.3877 REMARK 3 T33: 0.4041 T12: -0.0256 REMARK 3 T13: -0.0320 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.6629 L22: 0.2036 REMARK 3 L33: 0.6171 L12: 0.0013 REMARK 3 L13: 0.0179 L23: -0.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: 0.2498 S13: 0.0896 REMARK 3 S21: -0.7061 S22: 0.0863 S23: 0.1861 REMARK 3 S31: 0.1724 S32: -0.0531 S33: 0.0013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300013890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.094 REMARK 200 RESOLUTION RANGE LOW (A) : 26.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GCJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM MES PH4.0, 12.5% 2-PROPANOL, REMARK 280 20%(W/V) PEG 2000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.50100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.25050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.25050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.50100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 70 REMARK 465 GLN A 71 REMARK 465 GLY A 72 REMARK 465 GLN A 73 REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 THR A 191 REMARK 465 THR A 192 REMARK 465 ARG A 193 REMARK 465 ARG A 234 REMARK 465 GLY A 235 REMARK 465 LEU A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 56 -1.17 70.03 REMARK 500 LYS A 232 73.30 -103.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 6L1E A 2 236 UNP Q08945 SSRP1_HUMAN 196 430 SEQRES 1 A 235 GLY ASP ALA ILE CYS ILE PHE ARG GLU LEU GLN CYS LEU SEQRES 2 A 235 THR PRO ARG GLY ARG TYR ASP ILE ARG ILE TYR PRO THR SEQRES 3 A 235 PHE LEU HIS LEU HIS GLY LYS THR PHE ASP TYR LYS ILE SEQRES 4 A 235 PRO TYR THR THR VAL LEU ARG LEU PHE LEU LEU PRO HIS SEQRES 5 A 235 LYS ASP GLN ARG GLN MET PHE PHE VAL ILE SER LEU ASP SEQRES 6 A 235 PRO PRO ILE LYS GLN GLY GLN THR ARG TYR HIS PHE LEU SEQRES 7 A 235 ILE LEU LEU PHE SER LYS ASP GLU ASP ILE SER LEU THR SEQRES 8 A 235 LEU ASN MET ASN GLU GLU GLU VAL GLU LYS ARG PHE GLU SEQRES 9 A 235 GLY ARG LEU THR LYS ASN MET SER GLY SER LEU TYR GLU SEQRES 10 A 235 MET VAL SER ARG VAL MET LYS ALA LEU VAL ASN ARG LYS SEQRES 11 A 235 ILE THR VAL PRO GLY ASN PHE GLN GLY HIS SER GLY ALA SEQRES 12 A 235 GLN CYS ILE THR CYS SER TYR LYS ALA SER SER GLY LEU SEQRES 13 A 235 LEU TYR PRO LEU GLU ARG GLY PHE ILE TYR VAL HIS LYS SEQRES 14 A 235 PRO PRO VAL HIS ILE ARG PHE ASP GLU ILE SER PHE VAL SEQRES 15 A 235 ASN PHE ALA ARG GLY THR THR THR THR ARG SER PHE ASP SEQRES 16 A 235 PHE GLU ILE GLU THR LYS GLN GLY THR GLN TYR THR PHE SEQRES 17 A 235 SER SER ILE GLU ARG GLU GLU TYR GLY LYS LEU PHE ASP SEQRES 18 A 235 PHE VAL ASN ALA LYS LYS LEU ASN ILE LYS ASN ARG GLY SEQRES 19 A 235 LEU FORMUL 2 HOH *132(H2 O) HELIX 1 AA1 ASN A 96 GLU A 105 1 10 HELIX 2 AA2 LEU A 116 ASN A 129 1 14 HELIX 3 AA3 GLU A 213 GLU A 215 5 3 HELIX 4 AA4 GLU A 216 LYS A 227 1 12 SHEET 1 AA1 8 ASP A 37 PRO A 41 0 SHEET 2 AA1 8 PHE A 28 HIS A 32 -1 N LEU A 29 O ILE A 40 SHEET 3 AA1 8 GLY A 18 ILE A 24 -1 N ARG A 23 O HIS A 30 SHEET 4 AA1 8 CYS A 6 THR A 15 -1 N PHE A 8 O ILE A 22 SHEET 5 AA1 8 TYR A 76 SER A 84 -1 O ILE A 80 N LEU A 14 SHEET 6 AA1 8 GLN A 58 ILE A 69 -1 N ILE A 63 O LEU A 79 SHEET 7 AA1 8 VAL A 45 PRO A 52 -1 N PHE A 49 O VAL A 62 SHEET 8 AA1 8 ILE A 132 THR A 133 1 O THR A 133 N LEU A 48 SHEET 1 AA2 2 ASP A 88 THR A 92 0 SHEET 2 AA2 2 ASN A 111 SER A 115 -1 O MET A 112 N LEU A 91 SHEET 1 AA3 4 ILE A 147 SER A 150 0 SHEET 2 AA3 4 SER A 155 PRO A 160 -1 O LEU A 158 N ILE A 147 SHEET 3 AA3 4 GLY A 164 VAL A 168 -1 O ILE A 166 N TYR A 159 SHEET 4 AA3 4 VAL A 173 ARG A 176 -1 O VAL A 173 N TYR A 167 SHEET 1 AA4 3 ILE A 180 ALA A 186 0 SHEET 2 AA4 3 PHE A 195 THR A 201 -1 O GLU A 200 N SER A 181 SHEET 3 AA4 3 GLN A 206 ILE A 212 -1 O PHE A 209 N PHE A 197 CISPEP 1 THR A 15 PRO A 16 0 -8.69 CISPEP 2 ASP A 66 PRO A 67 0 5.92 CISPEP 3 VAL A 168 HIS A 169 0 8.12 CISPEP 4 LYS A 170 PRO A 171 0 -5.76 CRYST1 39.002 66.210 84.501 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011834 0.00000