HEADER OXIDOREDUCTASE 29-SEP-19 6L1G TITLE CRYSTAL STRUCTURE OF LIGHT-DEPENDENT PROTOCHLOROPHYLLIDE TITLE 2 OXIDOREDUCTASE FROM SYNECHOCYSTIS SP. PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT-DEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCR,NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE,POR; COMPND 5 EC: 1.3.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA); SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: POR, PCR, SLR0506; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHLOROPHYLL BIOSYNTHESIS, PHOTOCATALYSIS, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,X.WANG,L.LIU REVDAT 4 22-NOV-23 6L1G 1 REMARK REVDAT 3 29-APR-20 6L1G 1 JRNL REVDAT 2 15-APR-20 6L1G 1 JRNL REVDAT 1 01-APR-20 6L1G 0 JRNL AUTH C.S.DONG,W.L.ZHANG,Q.WANG,Y.S.LI,X.WANG,M.ZHANG,L.LIU JRNL TITL CRYSTAL STRUCTURES OF CYANOBACTERIAL LIGHT-DEPENDENT JRNL TITL 2 PROTOCHLOROPHYLLIDE OXIDOREDUCTASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 8455 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32234783 JRNL DOI 10.1073/PNAS.1920244117 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0860 - 5.0348 1.00 2854 156 0.1678 0.1679 REMARK 3 2 5.0348 - 3.9970 1.00 2740 150 0.1373 0.1730 REMARK 3 3 3.9970 - 3.4920 1.00 2703 139 0.1541 0.1879 REMARK 3 4 3.4920 - 3.1728 1.00 2667 137 0.1824 0.2122 REMARK 3 5 3.1728 - 2.9454 1.00 2686 143 0.1876 0.2373 REMARK 3 6 2.9454 - 2.7718 1.00 2680 125 0.1906 0.2525 REMARK 3 7 2.7718 - 2.6330 1.00 2618 159 0.2048 0.2264 REMARK 3 8 2.6330 - 2.5184 1.00 2643 137 0.1972 0.2639 REMARK 3 9 2.5184 - 2.4214 1.00 2652 135 0.2101 0.2609 REMARK 3 10 2.4214 - 2.3379 1.00 2660 136 0.2183 0.2367 REMARK 3 11 2.3379 - 2.2648 1.00 2605 149 0.2242 0.3004 REMARK 3 12 2.2648 - 2.2000 0.99 2577 144 0.2573 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4847 REMARK 3 ANGLE : 0.727 6579 REMARK 3 CHIRALITY : 0.046 730 REMARK 3 PLANARITY : 0.005 817 REMARK 3 DIHEDRAL : 11.336 2833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 57.4107 29.3437 12.0655 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.2620 REMARK 3 T33: 0.2905 T12: -0.0063 REMARK 3 T13: 0.0044 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.1602 L22: 1.2434 REMARK 3 L33: 2.1500 L12: -0.2749 REMARK 3 L13: 0.3631 L23: -1.3434 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0224 S13: -0.0059 REMARK 3 S21: -0.0008 S22: 0.0098 S23: -0.0105 REMARK 3 S31: 0.0466 S32: 0.0016 S33: 0.0309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 5 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 6 THROUGH 127 OR (RESID 128 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 129 THROUGH 146 OR REMARK 3 (RESID 147 THROUGH 148 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 158 THROUGH 245 OR (RESID 246 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 247 THROUGH 250 REMARK 3 OR RESID 254 THROUGH 283 OR RESID 294 REMARK 3 THROUGH 299 OR RESID 304 THROUGH 305 OR REMARK 3 (RESID 306 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 307 REMARK 3 THROUGH 321)) REMARK 3 SELECTION : (CHAIN B AND (RESID 5 THROUGH 48 OR REMARK 3 (RESID 49 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 50 REMARK 3 THROUGH 71 OR (RESID 72 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 73 THROUGH 98 OR (RESID 99 REMARK 3 THROUGH 100 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 101 THROUGH 148 OR RESID 158 THROUGH 212 REMARK 3 OR (RESID 213 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 214 THROUGH 262 OR (RESID 263 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 264 THROUGH 321)) REMARK 3 ATOM PAIRS NUMBER : 2632 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300013997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 1.5 M LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 78.00500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.56100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.56100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 149 REMARK 465 SER A 150 REMARK 465 LYS A 151 REMARK 465 GLU A 152 REMARK 465 LEU A 153 REMARK 465 GLY A 154 REMARK 465 GLY A 155 REMARK 465 LYS A 156 REMARK 465 ILE A 157 REMARK 465 GLY A 284 REMARK 465 ASN A 285 REMARK 465 ARG A 286 REMARK 465 GLN A 287 REMARK 465 GLN A 288 REMARK 465 ALA A 289 REMARK 465 GLY A 290 REMARK 465 ARG A 291 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLN B 3 REMARK 465 SER B 150 REMARK 465 LYS B 151 REMARK 465 GLU B 152 REMARK 465 LEU B 153 REMARK 465 GLY B 154 REMARK 465 GLY B 155 REMARK 465 LYS B 156 REMARK 465 ILE B 157 REMARK 465 VAL B 251 REMARK 465 THR B 252 REMARK 465 LYS B 253 REMARK 465 GLY B 284 REMARK 465 ASN B 285 REMARK 465 ARG B 286 REMARK 465 GLN B 287 REMARK 465 GLN B 288 REMARK 465 ALA B 289 REMARK 465 GLY B 290 REMARK 465 ARG B 291 REMARK 465 GLU B 292 REMARK 465 ALA B 293 REMARK 465 GLU B 300 REMARK 465 GLN B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 VAL B 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 PHE A 294 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 296 CG CD OE1 NE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLN A 301 CG CD OE1 NE2 REMARK 470 MET B 5 CG SD CE REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 THR B 147 OG1 CG2 REMARK 470 ASN B 149 CG OD1 ND2 REMARK 470 TRP B 246 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 246 CZ3 CH2 REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 PHE B 294 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 97 50.09 -114.05 REMARK 500 HIS A 116 -63.77 -104.72 REMARK 500 ALA A 293 31.16 -145.75 REMARK 500 PHE A 294 115.22 71.76 REMARK 500 GLU A 300 -97.08 -89.75 REMARK 500 MET B 5 -61.49 -107.71 REMARK 500 HIS B 116 -64.55 -105.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 DBREF 6L1G A 1 322 UNP Q59987 POR_SYNY3 1 322 DBREF 6L1G B 1 322 UNP Q59987 POR_SYNY3 1 322 SEQADV 6L1G MET A -19 UNP Q59987 EXPRESSION TAG SEQADV 6L1G GLY A -18 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER A -17 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER A -16 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A -15 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A -14 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A -13 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A -12 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A -11 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A -10 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER A -9 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER A -8 UNP Q59987 EXPRESSION TAG SEQADV 6L1G GLY A -7 UNP Q59987 EXPRESSION TAG SEQADV 6L1G LEU A -6 UNP Q59987 EXPRESSION TAG SEQADV 6L1G VAL A -5 UNP Q59987 EXPRESSION TAG SEQADV 6L1G PRO A -4 UNP Q59987 EXPRESSION TAG SEQADV 6L1G ARG A -3 UNP Q59987 EXPRESSION TAG SEQADV 6L1G GLY A -2 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER A -1 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS A 0 UNP Q59987 EXPRESSION TAG SEQADV 6L1G MET B -19 UNP Q59987 EXPRESSION TAG SEQADV 6L1G GLY B -18 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER B -17 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER B -16 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B -15 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B -14 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B -13 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B -12 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B -11 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B -10 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER B -9 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER B -8 UNP Q59987 EXPRESSION TAG SEQADV 6L1G GLY B -7 UNP Q59987 EXPRESSION TAG SEQADV 6L1G LEU B -6 UNP Q59987 EXPRESSION TAG SEQADV 6L1G VAL B -5 UNP Q59987 EXPRESSION TAG SEQADV 6L1G PRO B -4 UNP Q59987 EXPRESSION TAG SEQADV 6L1G ARG B -3 UNP Q59987 EXPRESSION TAG SEQADV 6L1G GLY B -2 UNP Q59987 EXPRESSION TAG SEQADV 6L1G SER B -1 UNP Q59987 EXPRESSION TAG SEQADV 6L1G HIS B 0 UNP Q59987 EXPRESSION TAG SEQRES 1 A 342 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 342 LEU VAL PRO ARG GLY SER HIS MET GLU GLN PRO MET LYS SEQRES 3 A 342 PRO THR VAL ILE ILE THR GLY ALA SER SER GLY VAL GLY SEQRES 4 A 342 LEU TYR GLY ALA LYS ALA LEU ILE ASP LYS GLY TRP HIS SEQRES 5 A 342 VAL ILE MET ALA CYS ARG ASN LEU ASP LYS THR GLN LYS SEQRES 6 A 342 VAL ALA ASP GLU LEU GLY PHE PRO LYS ASP SER TYR THR SEQRES 7 A 342 ILE ILE LYS LEU ASP LEU GLY TYR LEU ASP SER VAL ARG SEQRES 8 A 342 ARG PHE VAL ALA GLN PHE ARG GLU LEU GLY ARG PRO LEU SEQRES 9 A 342 LYS ALA LEU VAL CYS ASN ALA ALA VAL TYR PHE PRO LEU SEQRES 10 A 342 LEU ASP GLU PRO LEU TRP SER ALA ASP ASP TYR GLU LEU SEQRES 11 A 342 SER VAL ALA THR ASN HIS LEU GLY HIS PHE LEU LEU CYS SEQRES 12 A 342 ASN LEU LEU LEU GLU ASP LEU LYS ALA CYS PRO ASP ALA SEQRES 13 A 342 ASP LYS ARG LEU ILE ILE LEU GLY THR VAL THR ALA ASN SEQRES 14 A 342 SER LYS GLU LEU GLY GLY LYS ILE PRO ILE PRO ALA PRO SEQRES 15 A 342 PRO ASP LEU GLY ASN PHE GLU GLY PHE GLU ALA GLY PHE SEQRES 16 A 342 LYS LYS PRO ILE ALA MET ILE ASN ASN LYS LYS PHE LYS SEQRES 17 A 342 SER GLY LYS ALA TYR LYS ASP SER LYS LEU CYS ASN MET SEQRES 18 A 342 LEU THR THR ARG GLU LEU HIS ARG ARG PHE HIS GLN GLU SEQRES 19 A 342 THR GLY ILE VAL PHE ASN SER LEU TYR PRO GLY CYS VAL SEQRES 20 A 342 ALA ASP THR PRO LEU PHE ARG ASN HIS TYR SER LEU PHE SEQRES 21 A 342 ARG THR ILE PHE PRO TRP PHE GLN LYS ASN VAL THR LYS SEQRES 22 A 342 GLY TYR VAL SER GLN GLU LEU ALA GLY GLU ARG VAL ALA SEQRES 23 A 342 MET VAL VAL ALA ASP ASP LYS PHE LYS ASP SER GLY VAL SEQRES 24 A 342 HIS TRP SER TRP GLY ASN ARG GLN GLN ALA GLY ARG GLU SEQRES 25 A 342 ALA PHE VAL GLN GLU LEU SER GLU GLN GLY SER ASP ALA SEQRES 26 A 342 GLN LYS ALA GLN ARG MET TRP ASP LEU SER GLU LYS LEU SEQRES 27 A 342 VAL GLY LEU VAL SEQRES 1 B 342 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 342 LEU VAL PRO ARG GLY SER HIS MET GLU GLN PRO MET LYS SEQRES 3 B 342 PRO THR VAL ILE ILE THR GLY ALA SER SER GLY VAL GLY SEQRES 4 B 342 LEU TYR GLY ALA LYS ALA LEU ILE ASP LYS GLY TRP HIS SEQRES 5 B 342 VAL ILE MET ALA CYS ARG ASN LEU ASP LYS THR GLN LYS SEQRES 6 B 342 VAL ALA ASP GLU LEU GLY PHE PRO LYS ASP SER TYR THR SEQRES 7 B 342 ILE ILE LYS LEU ASP LEU GLY TYR LEU ASP SER VAL ARG SEQRES 8 B 342 ARG PHE VAL ALA GLN PHE ARG GLU LEU GLY ARG PRO LEU SEQRES 9 B 342 LYS ALA LEU VAL CYS ASN ALA ALA VAL TYR PHE PRO LEU SEQRES 10 B 342 LEU ASP GLU PRO LEU TRP SER ALA ASP ASP TYR GLU LEU SEQRES 11 B 342 SER VAL ALA THR ASN HIS LEU GLY HIS PHE LEU LEU CYS SEQRES 12 B 342 ASN LEU LEU LEU GLU ASP LEU LYS ALA CYS PRO ASP ALA SEQRES 13 B 342 ASP LYS ARG LEU ILE ILE LEU GLY THR VAL THR ALA ASN SEQRES 14 B 342 SER LYS GLU LEU GLY GLY LYS ILE PRO ILE PRO ALA PRO SEQRES 15 B 342 PRO ASP LEU GLY ASN PHE GLU GLY PHE GLU ALA GLY PHE SEQRES 16 B 342 LYS LYS PRO ILE ALA MET ILE ASN ASN LYS LYS PHE LYS SEQRES 17 B 342 SER GLY LYS ALA TYR LYS ASP SER LYS LEU CYS ASN MET SEQRES 18 B 342 LEU THR THR ARG GLU LEU HIS ARG ARG PHE HIS GLN GLU SEQRES 19 B 342 THR GLY ILE VAL PHE ASN SER LEU TYR PRO GLY CYS VAL SEQRES 20 B 342 ALA ASP THR PRO LEU PHE ARG ASN HIS TYR SER LEU PHE SEQRES 21 B 342 ARG THR ILE PHE PRO TRP PHE GLN LYS ASN VAL THR LYS SEQRES 22 B 342 GLY TYR VAL SER GLN GLU LEU ALA GLY GLU ARG VAL ALA SEQRES 23 B 342 MET VAL VAL ALA ASP ASP LYS PHE LYS ASP SER GLY VAL SEQRES 24 B 342 HIS TRP SER TRP GLY ASN ARG GLN GLN ALA GLY ARG GLU SEQRES 25 B 342 ALA PHE VAL GLN GLU LEU SER GLU GLN GLY SER ASP ALA SEQRES 26 B 342 GLN LYS ALA GLN ARG MET TRP ASP LEU SER GLU LYS LEU SEQRES 27 B 342 VAL GLY LEU VAL HET NDP A 400 48 HET SO4 A 401 5 HET SO4 A 402 5 HET NDP B 400 48 HET SO4 B 401 5 HET SO4 B 402 5 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *211(H2 O) HELIX 1 AA1 SER A 16 LYS A 29 1 14 HELIX 2 AA2 ASN A 39 LEU A 50 1 12 HELIX 3 AA3 PRO A 53 ASP A 55 5 3 HELIX 4 AA4 TYR A 66 LEU A 80 1 15 HELIX 5 AA5 GLU A 109 HIS A 116 1 8 HELIX 6 AA6 HIS A 116 CYS A 133 1 18 HELIX 7 AA7 PHE A 168 ALA A 173 1 6 HELIX 8 AA8 LYS A 188 GLY A 216 1 29 HELIX 9 AA9 PHE A 233 PHE A 244 1 12 HELIX 10 AB1 GLN A 248 THR A 252 5 5 HELIX 11 AB2 SER A 257 ASP A 271 1 15 HELIX 12 AB3 ASP A 272 LYS A 275 5 4 HELIX 13 AB4 GLY A 302 VAL A 319 1 18 HELIX 14 AB5 SER B 16 LYS B 29 1 14 HELIX 15 AB6 ASN B 39 LEU B 50 1 12 HELIX 16 AB7 PRO B 53 ASP B 55 5 3 HELIX 17 AB8 TYR B 66 LEU B 80 1 15 HELIX 18 AB9 GLU B 109 HIS B 116 1 8 HELIX 19 AC1 HIS B 116 CYS B 133 1 18 HELIX 20 AC2 PHE B 168 ALA B 173 1 6 HELIX 21 AC3 LYS B 188 GLY B 216 1 29 HELIX 22 AC4 THR B 230 PHE B 244 1 15 HELIX 23 AC5 SER B 257 ASP B 271 1 15 HELIX 24 AC6 ASP B 272 LYS B 275 5 4 HELIX 25 AC7 ALA B 305 GLY B 320 1 16 SHEET 1 AA1 8 TYR A 57 LYS A 61 0 SHEET 2 AA1 8 HIS A 32 CYS A 37 1 N MET A 35 O THR A 58 SHEET 3 AA1 8 THR A 8 THR A 12 1 N VAL A 9 O ILE A 34 SHEET 4 AA1 8 LEU A 84 CYS A 89 1 O VAL A 88 N ILE A 10 SHEET 5 AA1 8 ARG A 139 LEU A 143 1 O ILE A 141 N LEU A 87 SHEET 6 AA1 8 VAL A 218 TYR A 223 1 O VAL A 218 N LEU A 140 SHEET 7 AA1 8 VAL A 279 SER A 282 1 O TRP A 281 N TYR A 223 SHEET 8 AA1 8 VAL A 295 LEU A 298 -1 O VAL A 295 N SER A 282 SHEET 1 AA2 8 TYR B 57 LYS B 61 0 SHEET 2 AA2 8 HIS B 32 CYS B 37 1 N MET B 35 O THR B 58 SHEET 3 AA2 8 THR B 8 THR B 12 1 N VAL B 9 O ILE B 34 SHEET 4 AA2 8 LEU B 84 CYS B 89 1 O VAL B 88 N ILE B 10 SHEET 5 AA2 8 ARG B 139 LEU B 143 1 O ILE B 141 N CYS B 89 SHEET 6 AA2 8 VAL B 218 TYR B 223 1 O VAL B 218 N LEU B 140 SHEET 7 AA2 8 VAL B 279 SER B 282 1 O TRP B 281 N SER B 221 SHEET 8 AA2 8 VAL B 295 LEU B 298 -1 O VAL B 295 N SER B 282 CISPEP 1 LYS A 177 PRO A 178 0 11.71 CISPEP 2 LYS B 177 PRO B 178 0 11.29 SITE 1 AC1 35 GLY A 13 SER A 15 SER A 16 GLY A 17 SITE 2 AC1 35 VAL A 18 ARG A 38 LYS A 42 LEU A 62 SITE 3 AC1 35 ASP A 63 LEU A 64 GLY A 65 ASN A 90 SITE 4 AC1 35 ALA A 91 ALA A 92 VAL A 93 THR A 114 SITE 5 AC1 35 LEU A 143 GLY A 144 TYR A 193 LYS A 197 SITE 6 AC1 35 TYR A 223 GLY A 225 VAL A 227 THR A 230 SITE 7 AC1 35 PRO A 231 LEU A 232 HOH A 501 HOH A 515 SITE 8 AC1 35 HOH A 518 HOH A 542 HOH A 547 HOH A 549 SITE 9 AC1 35 HOH A 566 HOH A 567 HOH A 568 SITE 1 AC2 4 MET A 5 LYS A 6 ARG A 82 HOH A 531 SITE 1 AC3 6 ARG A 234 ASN A 235 HOH A 517 LEU B 97 SITE 2 AC3 6 LEU B 98 ASP B 99 SITE 1 AC4 32 GLY B 13 SER B 15 SER B 16 GLY B 17 SITE 2 AC4 32 VAL B 18 ARG B 38 LYS B 42 LEU B 62 SITE 3 AC4 32 ASP B 63 LEU B 64 GLY B 65 ASN B 90 SITE 4 AC4 32 ALA B 91 ALA B 92 VAL B 93 THR B 114 SITE 5 AC4 32 LEU B 143 GLY B 144 TYR B 193 LYS B 197 SITE 6 AC4 32 TYR B 223 VAL B 227 THR B 230 PRO B 231 SITE 7 AC4 32 LEU B 232 HOH B 504 HOH B 509 HOH B 523 SITE 8 AC4 32 HOH B 558 HOH B 560 HOH B 561 HOH B 583 SITE 1 AC5 5 PRO B 4 MET B 5 LYS B 6 HIS B 32 SITE 2 AC5 5 ARG B 82 SITE 1 AC6 4 LYS B 85 ASP B 135 ALA B 136 ASP B 137 CRYST1 156.010 57.122 72.856 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013726 0.00000