HEADER SIGNALING PROTEIN 16-OCT-19 6L4G TITLE CRYSTAL STRUCTURE OF HUMAN NDRG3 I171M/S176H MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NDRG3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: N-MYC DOWNSTREAM-REGULATED GENE 3 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NDRG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA-HYDROLASE FOLD, NDRG3, UNFOLDED HELIX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.R.KIM,B.W.HAN REVDAT 3 22-NOV-23 6L4G 1 REMARK REVDAT 2 07-JUL-21 6L4G 1 REMARK REVDAT 1 26-AUG-20 6L4G 0 JRNL AUTH K.R.KIM,K.A.KIM,J.S.PARK,J.Y.JANG,Y.CHOI,H.H.LEE,D.C.LEE, JRNL AUTH 2 K.C.PARK,Y.I.YEOM,H.J.KIM,B.W.HAN JRNL TITL STRUCTURAL AND BIOPHYSICAL ANALYSES OF HUMAN N-MYC JRNL TITL 2 DOWNSTREAM-REGULATED GENE 3 (NDRG3) PROTEIN. JRNL REF BIOMOLECULES V. 10 2020 JRNL REFN ESSN 2218-273X JRNL PMID 31935861 JRNL DOI 10.3390/BIOM10010090 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 9141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.792 REMARK 3 FREE R VALUE TEST SET COUNT : 438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.69400 REMARK 3 B22 (A**2) : -8.69400 REMARK 3 B33 (A**2) : 17.38900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4437 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4040 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6033 ; 1.279 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9424 ; 2.319 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 6.054 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;29.968 ;24.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 733 ;11.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4980 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 832 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1084 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 73 ; 0.330 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2166 ; 0.151 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2236 ; 1.828 ; 3.610 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2235 ; 1.827 ; 3.609 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2788 ; 3.282 ; 5.400 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2789 ; 3.281 ; 5.402 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2201 ; 1.226 ; 3.694 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2201 ; 1.226 ; 3.694 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3245 ; 2.305 ; 5.499 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3246 ; 2.305 ; 5.500 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.4992 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.5008 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6L4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10073 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6L4B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM CITRATE TRIBASIC PH REMARK 280 7.0 AND 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.50400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.25200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.25200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.50400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 VAL A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ILE A 12 REMARK 465 LYS A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 ASN A 17 REMARK 465 ASP A 18 REMARK 465 LYS A 19 REMARK 465 ASN A 20 REMARK 465 GLY A 21 REMARK 465 THR A 22 REMARK 465 ARG A 23 REMARK 465 ASN A 24 REMARK 465 PHE A 25 REMARK 465 GLN A 26 REMARK 465 ASP A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 169 REMARK 465 TRP A 170 REMARK 465 MET A 171 REMARK 465 ASP A 172 REMARK 465 TRP A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 HIS A 176 REMARK 465 LYS A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 GLY A 180 REMARK 465 LEU A 181 REMARK 465 THR A 182 REMARK 465 MET A 321 REMARK 465 THR A 322 REMARK 465 ARG A 323 REMARK 465 LEU A 324 REMARK 465 ALA A 325 REMARK 465 ARG A 326 REMARK 465 SER A 327 REMARK 465 ARG A 328 REMARK 465 THR A 329 REMARK 465 HIS A 330 REMARK 465 SER A 331 REMARK 465 THR A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 SER A 335 REMARK 465 LEU A 336 REMARK 465 GLY A 337 REMARK 465 SER A 338 REMARK 465 GLY A 339 REMARK 465 GLU A 340 REMARK 465 SER A 341 REMARK 465 PRO A 342 REMARK 465 PHE A 343 REMARK 465 SER A 344 REMARK 465 ARG A 345 REMARK 465 SER A 346 REMARK 465 VAL A 347 REMARK 465 THR A 348 REMARK 465 SER A 349 REMARK 465 ASN A 350 REMARK 465 GLN A 351 REMARK 465 SER A 352 REMARK 465 ASP A 353 REMARK 465 GLY A 354 REMARK 465 THR A 355 REMARK 465 GLN A 356 REMARK 465 GLU A 357 REMARK 465 SER A 358 REMARK 465 CYS A 359 REMARK 465 GLU A 360 REMARK 465 SER A 361 REMARK 465 PRO A 362 REMARK 465 ASP A 363 REMARK 465 VAL A 364 REMARK 465 LEU A 365 REMARK 465 ASP A 366 REMARK 465 ARG A 367 REMARK 465 HIS A 368 REMARK 465 GLN A 369 REMARK 465 THR A 370 REMARK 465 MET A 371 REMARK 465 GLU A 372 REMARK 465 VAL A 373 REMARK 465 SER A 374 REMARK 465 CYS A 375 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 9 REMARK 465 THR B 10 REMARK 465 GLU B 11 REMARK 465 ILE B 12 REMARK 465 LYS B 13 REMARK 465 PRO B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 ASN B 17 REMARK 465 ASP B 18 REMARK 465 LYS B 19 REMARK 465 ASN B 20 REMARK 465 GLY B 21 REMARK 465 THR B 22 REMARK 465 ARG B 23 REMARK 465 ASN B 24 REMARK 465 PHE B 25 REMARK 465 GLN B 26 REMARK 465 ASP B 27 REMARK 465 PHE B 28 REMARK 465 TRP B 173 REMARK 465 ALA B 174 REMARK 465 ALA B 175 REMARK 465 HIS B 176 REMARK 465 LYS B 177 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 GLY B 180 REMARK 465 LEU B 181 REMARK 465 THR B 182 REMARK 465 MET B 321 REMARK 465 THR B 322 REMARK 465 ARG B 323 REMARK 465 LEU B 324 REMARK 465 ALA B 325 REMARK 465 ARG B 326 REMARK 465 SER B 327 REMARK 465 ARG B 328 REMARK 465 THR B 329 REMARK 465 HIS B 330 REMARK 465 SER B 331 REMARK 465 THR B 332 REMARK 465 SER B 333 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 LEU B 336 REMARK 465 GLY B 337 REMARK 465 SER B 338 REMARK 465 GLY B 339 REMARK 465 GLU B 340 REMARK 465 SER B 341 REMARK 465 PRO B 342 REMARK 465 PHE B 343 REMARK 465 SER B 344 REMARK 465 ARG B 345 REMARK 465 SER B 346 REMARK 465 VAL B 347 REMARK 465 THR B 348 REMARK 465 SER B 349 REMARK 465 ASN B 350 REMARK 465 GLN B 351 REMARK 465 SER B 352 REMARK 465 ASP B 353 REMARK 465 GLY B 354 REMARK 465 THR B 355 REMARK 465 GLN B 356 REMARK 465 GLU B 357 REMARK 465 SER B 358 REMARK 465 CYS B 359 REMARK 465 GLU B 360 REMARK 465 SER B 361 REMARK 465 PRO B 362 REMARK 465 ASP B 363 REMARK 465 VAL B 364 REMARK 465 LEU B 365 REMARK 465 ASP B 366 REMARK 465 ARG B 367 REMARK 465 HIS B 368 REMARK 465 GLN B 369 REMARK 465 THR B 370 REMARK 465 MET B 371 REMARK 465 GLU B 372 REMARK 465 VAL B 373 REMARK 465 SER B 374 REMARK 465 CYS B 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 294 O VAL B 297 2.10 REMARK 500 O GLU A 272 OG SER A 275 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 170 64.91 -119.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 6L4G A 1 375 UNP Q9UGV2 NDRG3_HUMAN 1 375 DBREF 6L4G B 1 375 UNP Q9UGV2 NDRG3_HUMAN 1 375 SEQADV 6L4G MET A 171 UNP Q9UGV2 ILE 171 ENGINEERED MUTATION SEQADV 6L4G HIS A 176 UNP Q9UGV2 SER 176 ENGINEERED MUTATION SEQADV 6L4G MET B 171 UNP Q9UGV2 ILE 171 ENGINEERED MUTATION SEQADV 6L4G HIS B 176 UNP Q9UGV2 SER 176 ENGINEERED MUTATION SEQRES 1 A 375 MET ASP GLU LEU GLN ASP VAL GLN LEU THR GLU ILE LYS SEQRES 2 A 375 PRO LEU LEU ASN ASP LYS ASN GLY THR ARG ASN PHE GLN SEQRES 3 A 375 ASP PHE ASP CYS GLN GLU HIS ASP ILE GLU THR THR HIS SEQRES 4 A 375 GLY VAL VAL HIS VAL THR ILE ARG GLY LEU PRO LYS GLY SEQRES 5 A 375 ASN ARG PRO VAL ILE LEU THR TYR HIS ASP ILE GLY LEU SEQRES 6 A 375 ASN HIS LYS SER CYS PHE ASN ALA PHE PHE ASN PHE GLU SEQRES 7 A 375 ASP MET GLN GLU ILE THR GLN HIS PHE ALA VAL CYS HIS SEQRES 8 A 375 VAL ASP ALA PRO GLY GLN GLN GLU GLY ALA PRO SER PHE SEQRES 9 A 375 PRO THR GLY TYR GLN TYR PRO THR MET ASP GLU LEU ALA SEQRES 10 A 375 GLU MET LEU PRO PRO VAL LEU THR HIS LEU SER LEU LYS SEQRES 11 A 375 SER ILE ILE GLY ILE GLY VAL GLY ALA GLY ALA TYR ILE SEQRES 12 A 375 LEU SER ARG PHE ALA LEU ASN HIS PRO GLU LEU VAL GLU SEQRES 13 A 375 GLY LEU VAL LEU ILE ASN VAL ASP PRO CYS ALA LYS GLY SEQRES 14 A 375 TRP MET ASP TRP ALA ALA HIS LYS LEU SER GLY LEU THR SEQRES 15 A 375 THR ASN VAL VAL ASP ILE ILE LEU ALA HIS HIS PHE GLY SEQRES 16 A 375 GLN GLU GLU LEU GLN ALA ASN LEU ASP LEU ILE GLN THR SEQRES 17 A 375 TYR ARG MET HIS ILE ALA GLN ASP ILE ASN GLN ASP ASN SEQRES 18 A 375 LEU GLN LEU PHE LEU ASN SER TYR ASN GLY ARG ARG ASP SEQRES 19 A 375 LEU GLU ILE GLU ARG PRO ILE LEU GLY GLN ASN ASP ASN SEQRES 20 A 375 LYS SER LYS THR LEU LYS CYS SER THR LEU LEU VAL VAL SEQRES 21 A 375 GLY ASP ASN SER PRO ALA VAL GLU ALA VAL VAL GLU CYS SEQRES 22 A 375 ASN SER ARG LEU ASN PRO ILE ASN THR THR LEU LEU LYS SEQRES 23 A 375 MET ALA ASP CYS GLY GLY LEU PRO GLN VAL VAL GLN PRO SEQRES 24 A 375 GLY LYS LEU THR GLU ALA PHE LYS TYR PHE LEU GLN GLY SEQRES 25 A 375 MET GLY TYR ILE PRO SER ALA SER MET THR ARG LEU ALA SEQRES 26 A 375 ARG SER ARG THR HIS SER THR SER SER SER LEU GLY SER SEQRES 27 A 375 GLY GLU SER PRO PHE SER ARG SER VAL THR SER ASN GLN SEQRES 28 A 375 SER ASP GLY THR GLN GLU SER CYS GLU SER PRO ASP VAL SEQRES 29 A 375 LEU ASP ARG HIS GLN THR MET GLU VAL SER CYS SEQRES 1 B 375 MET ASP GLU LEU GLN ASP VAL GLN LEU THR GLU ILE LYS SEQRES 2 B 375 PRO LEU LEU ASN ASP LYS ASN GLY THR ARG ASN PHE GLN SEQRES 3 B 375 ASP PHE ASP CYS GLN GLU HIS ASP ILE GLU THR THR HIS SEQRES 4 B 375 GLY VAL VAL HIS VAL THR ILE ARG GLY LEU PRO LYS GLY SEQRES 5 B 375 ASN ARG PRO VAL ILE LEU THR TYR HIS ASP ILE GLY LEU SEQRES 6 B 375 ASN HIS LYS SER CYS PHE ASN ALA PHE PHE ASN PHE GLU SEQRES 7 B 375 ASP MET GLN GLU ILE THR GLN HIS PHE ALA VAL CYS HIS SEQRES 8 B 375 VAL ASP ALA PRO GLY GLN GLN GLU GLY ALA PRO SER PHE SEQRES 9 B 375 PRO THR GLY TYR GLN TYR PRO THR MET ASP GLU LEU ALA SEQRES 10 B 375 GLU MET LEU PRO PRO VAL LEU THR HIS LEU SER LEU LYS SEQRES 11 B 375 SER ILE ILE GLY ILE GLY VAL GLY ALA GLY ALA TYR ILE SEQRES 12 B 375 LEU SER ARG PHE ALA LEU ASN HIS PRO GLU LEU VAL GLU SEQRES 13 B 375 GLY LEU VAL LEU ILE ASN VAL ASP PRO CYS ALA LYS GLY SEQRES 14 B 375 TRP MET ASP TRP ALA ALA HIS LYS LEU SER GLY LEU THR SEQRES 15 B 375 THR ASN VAL VAL ASP ILE ILE LEU ALA HIS HIS PHE GLY SEQRES 16 B 375 GLN GLU GLU LEU GLN ALA ASN LEU ASP LEU ILE GLN THR SEQRES 17 B 375 TYR ARG MET HIS ILE ALA GLN ASP ILE ASN GLN ASP ASN SEQRES 18 B 375 LEU GLN LEU PHE LEU ASN SER TYR ASN GLY ARG ARG ASP SEQRES 19 B 375 LEU GLU ILE GLU ARG PRO ILE LEU GLY GLN ASN ASP ASN SEQRES 20 B 375 LYS SER LYS THR LEU LYS CYS SER THR LEU LEU VAL VAL SEQRES 21 B 375 GLY ASP ASN SER PRO ALA VAL GLU ALA VAL VAL GLU CYS SEQRES 22 B 375 ASN SER ARG LEU ASN PRO ILE ASN THR THR LEU LEU LYS SEQRES 23 B 375 MET ALA ASP CYS GLY GLY LEU PRO GLN VAL VAL GLN PRO SEQRES 24 B 375 GLY LYS LEU THR GLU ALA PHE LYS TYR PHE LEU GLN GLY SEQRES 25 B 375 MET GLY TYR ILE PRO SER ALA SER MET THR ARG LEU ALA SEQRES 26 B 375 ARG SER ARG THR HIS SER THR SER SER SER LEU GLY SER SEQRES 27 B 375 GLY GLU SER PRO PHE SER ARG SER VAL THR SER ASN GLN SEQRES 28 B 375 SER ASP GLY THR GLN GLU SER CYS GLU SER PRO ASP VAL SEQRES 29 B 375 LEU ASP ARG HIS GLN THR MET GLU VAL SER CYS FORMUL 3 HOH *6(H2 O) HELIX 1 AA1 ASN A 66 PHE A 77 1 12 HELIX 2 AA2 PHE A 77 PHE A 87 1 11 HELIX 3 AA3 THR A 112 MET A 119 1 8 HELIX 4 AA4 MET A 119 LEU A 127 1 9 HELIX 5 AA5 GLY A 138 HIS A 151 1 14 HELIX 6 AA6 ASN A 184 PHE A 194 1 11 HELIX 7 AA7 GLY A 195 ALA A 201 1 7 HELIX 8 AA8 LEU A 203 ILE A 217 1 15 HELIX 9 AA9 ASP A 220 GLY A 231 1 12 HELIX 10 AB1 ALA A 266 ARG A 276 1 11 HELIX 11 AB2 LEU A 293 GLN A 298 1 6 HELIX 12 AB3 GLN A 298 GLY A 314 1 17 HELIX 13 AB4 ASN B 66 ASN B 76 1 11 HELIX 14 AB5 PHE B 77 GLN B 85 1 9 HELIX 15 AB6 THR B 112 MET B 119 1 8 HELIX 16 AB7 MET B 119 LEU B 127 1 9 HELIX 17 AB8 GLY B 138 HIS B 151 1 14 HELIX 18 AB9 ASN B 184 PHE B 194 1 11 HELIX 19 AC1 GLY B 195 ASN B 202 1 8 HELIX 20 AC2 LEU B 203 ILE B 217 1 15 HELIX 21 AC3 ASN B 218 GLY B 231 1 14 HELIX 22 AC4 ALA B 266 ARG B 276 1 11 HELIX 23 AC5 GLN B 298 GLY B 314 1 17 SHEET 1 AA1 8 GLN A 31 GLU A 36 0 SHEET 2 AA1 8 VAL A 41 ARG A 47 -1 O ILE A 46 N GLN A 31 SHEET 3 AA1 8 VAL A 89 ASP A 93 -1 O HIS A 91 N THR A 45 SHEET 4 AA1 8 ILE A 57 TYR A 60 1 N THR A 59 O VAL A 92 SHEET 5 AA1 8 ILE A 132 VAL A 137 1 O ILE A 135 N TYR A 60 SHEET 6 AA1 8 VAL A 155 ILE A 161 1 O ILE A 161 N GLY A 136 SHEET 7 AA1 8 SER A 255 GLY A 261 1 O LEU A 257 N LEU A 158 SHEET 8 AA1 8 THR A 282 MET A 287 1 O THR A 283 N LEU A 258 SHEET 1 AA2 8 CYS B 30 THR B 37 0 SHEET 2 AA2 8 GLY B 40 ARG B 47 -1 O GLY B 40 N THR B 37 SHEET 3 AA2 8 VAL B 89 ASP B 93 -1 O ASP B 93 N HIS B 43 SHEET 4 AA2 8 VAL B 56 TYR B 60 1 N THR B 59 O CYS B 90 SHEET 5 AA2 8 ILE B 132 VAL B 137 1 O ILE B 135 N LEU B 58 SHEET 6 AA2 8 VAL B 155 ILE B 161 1 O ILE B 161 N GLY B 136 SHEET 7 AA2 8 SER B 255 GLY B 261 1 O VAL B 259 N LEU B 160 SHEET 8 AA2 8 LEU B 284 MET B 287 1 O LEU B 285 N LEU B 258 SSBOND 1 CYS A 30 CYS B 30 1555 1555 2.03 CRYST1 100.387 100.387 111.756 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009961 0.005751 0.000000 0.00000 SCALE2 0.000000 0.011502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008948 0.00000