HEADER TRANSFERASE 24-OCT-19 6L5Q TITLE CRYSTAL STRUCTURE OF GGCGT IN COMPLEX WITH UDP-GAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGCGT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCYRRHIZA GLABRA; SOURCE 3 ORGANISM_TAXID: 49827; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DI-C-GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,F.D.LI,M.YE REVDAT 3 22-NOV-23 6L5Q 1 REMARK REVDAT 2 04-MAR-20 6L5Q 1 JRNL REVDAT 1 19-FEB-20 6L5Q 0 JRNL AUTH M.ZHANG,F.D.LI,K.LI,Z.L.WANG,Y.X.WANG,J.B.HE,H.F.SU, JRNL AUTH 2 Z.Y.ZHANG,C.B.CHI,X.M.SHI,C.H.YUN,Z.Y.ZHANG,Z.M.LIU, JRNL AUTH 3 L.R.ZHANG,D.H.YANG,M.MA,X.QIAO,M.YE JRNL TITL FUNCTIONAL CHARACTERIZATION AND STRUCTURAL BASIS OF AN JRNL TITL 2 EFFICIENT DI-C-GLYCOSYLTRANSFERASE FROMGLYCYRRHIZA GLABRA. JRNL REF J.AM.CHEM.SOC. V. 142 3506 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 31986016 JRNL DOI 10.1021/JACS.9B12211 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 3 NUMBER OF REFLECTIONS : 8250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9110 - 4.1730 0.99 3290 173 0.2064 0.2486 REMARK 3 2 4.1730 - 3.3129 0.89 2855 144 0.2362 0.3032 REMARK 3 3 3.3129 - 2.8943 0.54 1708 80 0.2860 0.3246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9580 -32.5060 -11.8658 REMARK 3 T TENSOR REMARK 3 T11: 0.2995 T22: 0.3337 REMARK 3 T33: 0.4258 T12: 0.1176 REMARK 3 T13: 0.0346 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.9399 L22: 1.8143 REMARK 3 L33: 1.5603 L12: -0.1480 REMARK 3 L13: 0.2147 L23: 0.4536 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.2286 S13: -0.6353 REMARK 3 S21: 0.2190 S22: -0.0288 S23: 0.4249 REMARK 3 S31: 0.5313 S32: 0.1634 S33: 0.0512 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3855 -10.0588 1.7369 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.5126 REMARK 3 T33: 0.5546 T12: 0.0457 REMARK 3 T13: 0.0179 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 1.6493 L22: 2.7827 REMARK 3 L33: 4.4725 L12: -0.9157 REMARK 3 L13: -1.3363 L23: 0.8387 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: -0.4166 S13: -0.0067 REMARK 3 S21: 0.1249 S22: -0.1215 S23: 0.9223 REMARK 3 S31: 0.2410 S32: -0.8981 S33: 0.1301 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1369 -22.9826 1.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.3342 T22: 0.3604 REMARK 3 T33: 0.2677 T12: 0.0452 REMARK 3 T13: 0.0750 T23: 0.1191 REMARK 3 L TENSOR REMARK 3 L11: 1.6239 L22: 1.7965 REMARK 3 L33: 0.7256 L12: -0.2702 REMARK 3 L13: -0.5891 L23: 1.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: -0.4700 S13: -0.3504 REMARK 3 S21: 0.6103 S22: 0.0150 S23: 0.4259 REMARK 3 S31: 0.5034 S32: 0.0820 S33: 0.0402 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2566 -10.1499 -25.1427 REMARK 3 T TENSOR REMARK 3 T11: 0.3886 T22: 0.5060 REMARK 3 T33: 0.3478 T12: 0.0253 REMARK 3 T13: 0.2065 T23: -0.1484 REMARK 3 L TENSOR REMARK 3 L11: 0.7975 L22: 0.1790 REMARK 3 L33: 1.0100 L12: 0.0810 REMARK 3 L13: -0.2693 L23: -0.4241 REMARK 3 S TENSOR REMARK 3 S11: 0.2416 S12: 0.1406 S13: 0.2428 REMARK 3 S21: -0.3199 S22: -0.0071 S23: -0.3197 REMARK 3 S31: -0.2555 S32: 0.1696 S33: 0.6231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1074 -0.7299 -28.0759 REMARK 3 T TENSOR REMARK 3 T11: 0.4523 T22: 0.4818 REMARK 3 T33: 0.2120 T12: 0.0457 REMARK 3 T13: 0.0980 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 4.1088 L22: 4.9523 REMARK 3 L33: 5.1925 L12: -1.5022 REMARK 3 L13: 1.8890 L23: 0.6793 REMARK 3 S TENSOR REMARK 3 S11: 0.5337 S12: -0.2064 S13: 0.2323 REMARK 3 S21: -0.0975 S22: -0.1530 S23: 0.4027 REMARK 3 S31: -0.2293 S32: 0.1342 S33: -0.3156 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1053 -9.1680 -10.8333 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.3789 REMARK 3 T33: 0.1238 T12: 0.0201 REMARK 3 T13: 0.0914 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 1.5899 L22: 0.9829 REMARK 3 L33: 1.8155 L12: -0.0073 REMARK 3 L13: -0.5393 L23: 0.1925 REMARK 3 S TENSOR REMARK 3 S11: 0.0952 S12: -0.2805 S13: 0.0489 REMARK 3 S21: -0.0836 S22: 0.1419 S23: -0.2498 REMARK 3 S31: -0.0939 S32: 0.2837 S33: 0.0727 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9820 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.894 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ACW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M TRIS, PH REMARK 280 8.5, 25% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.91100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.91100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.91350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.63900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.91350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.63900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.91100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.91350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.63900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.91100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.91350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.63900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 HIS A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 VAL A 15 REMARK 465 SER A 82 REMARK 465 ASP A 83 REMARK 465 SER A 84 REMARK 465 THR A 85 REMARK 465 ILE A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 ASP A 89 REMARK 465 VAL A 259 REMARK 465 LYS A 260 REMARK 465 ARG A 261 REMARK 465 GLY A 262 REMARK 465 ILE A 315 REMARK 465 VAL A 316 REMARK 465 ASP A 317 REMARK 465 ARG A 318 REMARK 465 ALA A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 GLU A 322 REMARK 465 GLY A 323 REMARK 465 LEU A 324 REMARK 465 LYS A 470 REMARK 465 ASN A 471 REMARK 465 VAL A 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 92 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 196 CG OD1 ND2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 PHE A 330 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 LYS A 463 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 42 75.04 59.45 REMARK 500 VAL A 54 -76.34 -71.79 REMARK 500 SER A 111 45.23 -85.84 REMARK 500 SER A 146 -169.13 -104.20 REMARK 500 SER A 165 44.78 -86.91 REMARK 500 ASN A 196 51.22 -114.62 REMARK 500 LYS A 212 32.30 -83.05 REMARK 500 GLU A 271 49.20 -89.99 REMARK 500 THR A 286 76.03 50.26 REMARK 500 ALA A 287 40.77 -97.45 REMARK 500 LYS A 341 -32.07 -135.63 REMARK 500 ASP A 411 -174.16 63.94 REMARK 500 SER A 452 -131.49 -111.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDU A 501 DBREF 6L5Q A -1 472 PDB 6L5Q 6L5Q -1 472 SEQRES 1 A 474 GLY SER MET GLY GLU ASN ASN MET SER SER ILE ALA PRO SEQRES 2 A 474 HIS PRO VAL VAL HIS VAL ALA LEU LEU PRO SER ALA GLY SEQRES 3 A 474 MET GLY HIS LEU THR PRO PHE LEU ARG LEU ALA SER LEU SEQRES 4 A 474 LEU LEU HIS GLN HIS CYS HIS VAL THR LEU ILE THR PRO SEQRES 5 A 474 GLN PRO THR VAL SER LYS ALA GLU GLU ASP LEU LEU SER SEQRES 6 A 474 ARG PHE LEU SER ALA PHE PRO GLN VAL ASN GLN LEU HIS SEQRES 7 A 474 PHE HIS LEU PRO PRO SER ASP SER THR ILE SER THR ASP SEQRES 8 A 474 PRO PHE PHE LEU GLN PHE ALA SER ILE ARG SER SER SER SEQRES 9 A 474 HIS LEU LEU THR PRO LEU LEU SER SER LEU THR PRO PRO SEQRES 10 A 474 LEU SER SER PHE ILE TYR ASP MET THR LEU ILE SER PRO SEQRES 11 A 474 LEU LEU PRO ILE ALA GLU SER LEU GLY VAL PRO HIS TYR SEQRES 12 A 474 ILE LEU PHE THR SER SER ALA THR MET PHE SER PHE PHE SEQRES 13 A 474 SER TYR PHE PRO THR LEU ALA LYS SER GLU SER PHE PRO SEQRES 14 A 474 GLY LYS LEU ASP PHE VAL GLU ILE PRO GLY VAL SER VAL SEQRES 15 A 474 SER SER ILE PRO ARG SER SER ILE PRO PRO PRO LEU LEU SEQRES 16 A 474 VAL PRO ASN SER LEU PHE GLY LYS LEU PHE MET GLU ASP SEQRES 17 A 474 SER PRO LYS LEU LYS LYS LEU HIS GLY VAL LEU VAL ASN SEQRES 18 A 474 THR PHE GLU GLY ILE GLU LYS LEU SER LEU GLU ALA LEU SEQRES 19 A 474 ASN GLY GLY LYS VAL VAL LYS GLY LEU PRO PRO VAL TYR SEQRES 20 A 474 GLY VAL GLY PRO PHE VAL PRO CYS GLU PHE GLU LYS VAL SEQRES 21 A 474 VAL LYS ARG GLY GLU THR ILE SER GLU TRP LEU ASP GLU SEQRES 22 A 474 GLN PRO SER GLY SER VAL VAL TYR VAL SER PHE GLY SER SEQRES 23 A 474 ARG THR ALA MET GLY ARG GLU GLN LEU ARG GLU VAL GLY SEQRES 24 A 474 ASP GLY LEU VAL LYS SER GLY TRP ARG PHE LEU TRP VAL SEQRES 25 A 474 VAL LYS ASP LYS ILE VAL ASP ARG ALA GLU GLU GLU GLY SEQRES 26 A 474 LEU ASP GLY VAL LEU GLY PHE GLU LEU VAL GLU ARG MET SEQRES 27 A 474 VAL LYS GLU LYS LYS GLY LEU VAL VAL LYS GLU TRP VAL SEQRES 28 A 474 ASP GLN SER GLU ILE LEU GLY HIS LYS ALA VAL GLY GLY SEQRES 29 A 474 PHE VAL SER HIS CYS GLY TRP ASN SER VAL VAL GLU ALA SEQRES 30 A 474 ALA TRP PHE GLY VAL LYS ILE LEU GLY TRP PRO LEU HIS SEQRES 31 A 474 GLY ASP GLN LYS ILE ASN ALA GLU VAL VAL ALA LYS GLY SEQRES 32 A 474 GLY TRP GLY VAL TRP LYS GLU GLY TRP ASP TRP GLU GLY SEQRES 33 A 474 GLU ARG LEU VAL LYS GLY GLU GLU ILE GLY GLU ALA ILE SEQRES 34 A 474 ARG GLU VAL MET ASN ASP GLU SER LEU VAL MET LYS ALA SEQRES 35 A 474 THR GLN VAL LYS LYS ASP ALA ARG LYS ALA ILE SER VAL SEQRES 36 A 474 GLY GLY GLY CYS GLU VAL ALA LEU GLN LYS LEU MET GLU SEQRES 37 A 474 VAL TRP LYS LYS ASN VAL HET GDU A 501 36 HETNAM GDU GALACTOSE-URIDINE-5'-DIPHOSPHATE HETSYN GDU UDP-D-GALACTOPYRANOSE FORMUL 2 GDU C15 H24 N2 O17 P2 HELIX 1 AA1 GLY A 24 GLN A 41 1 18 HELIX 2 AA2 SER A 55 PHE A 69 1 15 HELIX 3 AA3 PHE A 91 SER A 101 1 11 HELIX 4 AA4 LEU A 104 SER A 111 1 8 HELIX 5 AA5 LEU A 125 GLY A 137 1 13 HELIX 6 AA6 SER A 147 SER A 163 1 17 HELIX 7 AA7 PRO A 189 VAL A 194 1 6 HELIX 8 AA8 SER A 197 SER A 207 1 11 HELIX 9 AA9 PRO A 208 LEU A 210 5 3 HELIX 10 AB1 GLU A 225 GLY A 234 1 10 HELIX 11 AB2 THR A 264 GLU A 271 1 8 HELIX 12 AB3 GLY A 289 GLY A 304 1 16 HELIX 13 AB4 GLY A 329 GLU A 339 1 11 HELIX 14 AB5 ASP A 350 HIS A 357 1 8 HELIX 15 AB6 GLY A 368 PHE A 378 1 11 HELIX 16 AB7 ASP A 390 GLY A 401 1 12 HELIX 17 AB8 GLU A 408 ASP A 411 5 4 HELIX 18 AB9 LYS A 419 ASP A 433 1 15 HELIX 19 AC1 ASP A 433 ALA A 450 1 18 HELIX 20 AC2 GLY A 455 TRP A 468 1 14 SHEET 1 AA1 7 ASN A 73 HIS A 78 0 SHEET 2 AA1 7 VAL A 45 GLN A 51 1 N THR A 49 O LEU A 75 SHEET 3 AA1 7 VAL A 17 LEU A 20 1 N LEU A 19 O ILE A 48 SHEET 4 AA1 7 PHE A 119 ASP A 122 1 O ILE A 120 N ALA A 18 SHEET 5 AA1 7 HIS A 140 PHE A 144 1 O TYR A 141 N PHE A 119 SHEET 6 AA1 7 GLY A 215 VAL A 218 1 O LEU A 217 N ILE A 142 SHEET 7 AA1 7 VAL A 244 GLY A 246 1 O TYR A 245 N VAL A 216 SHEET 1 AA2 2 PHE A 172 VAL A 173 0 SHEET 2 AA2 2 ILE A 183 PRO A 184 -1 O ILE A 183 N VAL A 173 SHEET 1 AA3 6 GLY A 342 VAL A 345 0 SHEET 2 AA3 6 PHE A 307 VAL A 310 1 N TRP A 309 O LEU A 343 SHEET 3 AA3 6 VAL A 277 SER A 281 1 N VAL A 278 O LEU A 308 SHEET 4 AA3 6 VAL A 360 SER A 365 1 O VAL A 364 N TYR A 279 SHEET 5 AA3 6 LYS A 381 GLY A 384 1 O LEU A 383 N PHE A 363 SHEET 6 AA3 6 GLY A 404 TRP A 406 1 O VAL A 405 N GLY A 384 CISPEP 1 GLN A 51 PRO A 52 0 2.21 CISPEP 2 THR A 113 PRO A 114 0 -1.22 CISPEP 3 PHE A 166 PRO A 167 0 -0.96 CISPEP 4 GLY A 248 PRO A 249 0 0.85 SITE 1 AC1 20 GLY A 26 HIS A 27 THR A 29 THR A 145 SITE 2 AC1 20 GLY A 283 SER A 284 ARG A 285 VAL A 310 SITE 3 AC1 20 LYS A 312 TRP A 348 VAL A 349 GLN A 351 SITE 4 AC1 20 HIS A 366 GLY A 368 TRP A 369 ASN A 370 SITE 5 AC1 20 SER A 371 GLU A 374 ASP A 390 GLN A 391 CRYST1 85.827 139.278 73.822 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013546 0.00000