HEADER IMMUNE SYSTEM/VIRUS 25-OCT-19 6L62 TITLE NEUTRALIZATION MECHANISM OF A MONOCLONAL ANTIBODY TARGETING A PORCINE TITLE 2 CIRCOVIRUS TYPE 2 CAP PROTEIN CONFORMATIONAL EPITOPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF FAB FRAGMENT; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEAVY CHAIN OF FAB FRAGMENT; COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN; COMPND 9 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: PORCINE CIRCOVIRUS 2; SOURCE 9 ORGANISM_COMMON: PCV2; SOURCE 10 ORGANISM_TAXID: 85708 KEYWDS PORCINE CIRCOVIRUS TYPE 2, CAP PROTEIN, VIRUS, IMMUNE SYSTEM-VIRUS KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Z.SUN,L.HUANG,D.XIA,Y.WEI,E.SUN,H.ZHU,H.BIAN,H.WU,L.FENG,J.WANG,C.LIU REVDAT 3 29-APR-20 6L62 1 JRNL REVDAT 2 04-MAR-20 6L62 1 JRNL REVDAT 1 12-FEB-20 6L62 0 JRNL AUTH L.HUANG,Z.SUN,D.XIA,Y.WEI,E.SUN,C.LIU,H.ZHU,H.BIAN,H.WU, JRNL AUTH 2 L.FENG,J.WANG,C.LIU JRNL TITL NEUTRALIZATION MECHANISM OF A MONOCLONAL ANTIBODY TARGETING JRNL TITL 2 A PORCINE CIRCOVIRUS TYPE 2 CAP PROTEIN CONFORMATIONAL JRNL TITL 3 EPITOPE. JRNL REF J.VIROL. V. 94 2020 JRNL REFN ESSN 1098-5514 JRNL PMID 32075932 JRNL DOI 10.1128/JVI.01836-19 REMARK 2 REMARK 2 RESOLUTION. 7.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.200 REMARK 3 NUMBER OF PARTICLES : 3500 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6L62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014264. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PCV2 VIRION IN COMPLEX WITH FAB REMARK 245 FRAGMENTS OF THE MAB 3A5; LIGHT REMARK 245 CHAIN OF FAB FRAGMENT OF THE REMARK 245 MAB 3A5; HEAVY CHAIN OF FAB REMARK 245 FRAGMENT FAB OF THE MAB 3A5; REMARK 245 PCV2 VIRION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI CETA (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 35.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 3 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 4 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 5 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 6 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 6 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 8 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 8 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 9 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 9 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 9 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 10 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 11 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 11 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 12 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 12 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 13 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 14 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 16 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 16 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 16 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 18 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 18 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 18 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 19 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 23 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 25 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 26 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 26 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 27 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 28 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 29 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 29 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 30 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 31 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 31 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 31 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 32 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 32 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 32 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 36 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 36 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 38 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 39 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 43 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 44 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 45 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 45 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 45 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 46 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 46 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 46 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 47 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 47 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 48 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 48 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 48 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 49 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 50 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 51 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 51 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 51 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 52 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 52 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 52 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 53 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 53 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 56 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 56 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 58 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 58 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 59 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 59 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 59 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 60 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 60 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 60 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 ARG A 12 REMARK 465 HIS A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 ILE A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 PRO A 27 REMARK 465 TRP A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 HIS A 31 REMARK 465 PRO A 32 REMARK 465 ARG A 33 REMARK 465 HIS A 34 REMARK 465 ARG A 35 REMARK 465 TYR A 36 REMARK 465 ARG A 37 REMARK 465 TRP A 38 REMARK 465 ARG A 39 REMARK 465 ARG A 40 REMARK 465 LYS A 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB TYR H 318 OG1 THR A 134 1.20 REMARK 500 OD2 ASP H 243 CE2 PHE H 313 1.31 REMARK 500 N TYR H 318 CG2 THR A 134 1.39 REMARK 500 OH TYR L 55 CB MET H 321 1.44 REMARK 500 CE1 TYR L 49 CZ PHE H 319 1.46 REMARK 500 CE1 TYR L 55 CA MET H 321 1.54 REMARK 500 CG TYR H 318 OG1 THR A 134 1.55 REMARK 500 CG2 VAL H 249 CZ2 TRP H 324 1.63 REMARK 500 OH TYR H 316 CG2 THR A 60 1.69 REMARK 500 CZ TYR L 55 CB MET H 321 1.70 REMARK 500 O THR H 240 NH2 ARG H 310 1.72 REMARK 500 CB SER H 314 CB LYS A 132 1.74 REMARK 500 OD1 ASN L 53 OG1 THR A 61 1.79 REMARK 500 CA PHE H 241 NH2 ARG H 310 1.80 REMARK 500 CE1 TYR L 55 CB MET H 321 1.81 REMARK 500 OD2 ASP H 243 CD2 PHE H 313 1.83 REMARK 500 CA PHE H 241 NH1 ARG H 310 1.84 REMARK 500 CG2 THR H 240 CE2 PHE H 313 1.87 REMARK 500 O ASP H 317 N PHE H 319 1.87 REMARK 500 N ASP H 317 CG2 THR A 134 1.89 REMARK 500 NH1 ARG H 315 O THR A 56 1.90 REMARK 500 OD2 ASP H 243 CZ PHE H 313 1.93 REMARK 500 CA PHE H 241 CZ ARG H 310 1.97 REMARK 500 CG PHE H 241 NH1 ARG H 310 1.99 REMARK 500 OG SER H 314 CB LYS A 132 2.02 REMARK 500 CD1 TYR L 49 CE1 PHE H 319 2.08 REMARK 500 CE1 TYR L 49 CE1 PHE H 319 2.13 REMARK 500 C PHE H 241 NH2 ARG H 310 2.14 REMARK 500 OH TYR L 49 CE2 PHE H 319 2.15 REMARK 500 OH TYR L 55 CG MET H 321 2.16 REMARK 500 CZ ARG H 315 O THR A 56 2.17 REMARK 500 CZ TYR L 55 CG MET H 321 2.17 REMARK 500 CG2 VAL H 249 CH2 TRP H 324 2.18 REMARK 500 C ASP H 317 CG2 THR A 134 2.18 REMARK 500 O ASN H 323 N GLY H 325 2.19 REMARK 500 C THR H 240 NH2 ARG H 310 2.19 REMARK 500 N PHE H 241 NH2 ARG H 310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 31 37.76 -70.30 REMARK 500 ALA L 51 -28.46 75.47 REMARK 500 SER L 52 12.62 -146.83 REMARK 500 TYR L 55 138.32 70.52 REMARK 500 ALA L 68 -138.20 72.40 REMARK 500 VAL L 84 -168.01 -172.11 REMARK 500 ASN L 138 73.51 45.01 REMARK 500 TYR H 244 -153.27 -142.98 REMARK 500 ALA H 304 -178.60 170.94 REMARK 500 ARG H 310 -147.39 -145.26 REMARK 500 PRO H 312 -120.68 -86.44 REMARK 500 PHE H 313 59.79 -153.26 REMARK 500 SER H 314 -142.55 51.10 REMARK 500 ARG H 315 19.54 48.38 REMARK 500 TYR H 316 67.26 82.33 REMARK 500 TYR H 318 49.24 -5.67 REMARK 500 PHE H 319 -111.24 -160.11 REMARK 500 MET H 321 -116.12 49.55 REMARK 500 TRP H 324 27.48 -55.26 REMARK 500 SER H 349 71.04 70.35 REMARK 500 ASN H 354 -71.78 -42.94 REMARK 500 SER H 355 -61.86 -90.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0838 RELATED DB: EMDB REMARK 900 NEUTRALIZATION MECHANISM OF A MONOCLONAL ANTIBODY TARGETING A REMARK 900 PORCINE CIRCOVIRUS TYPE 2 CAP PROTEIN CONFORMATIONAL EPITOPE DBREF 6L62 L 1 212 PDB 6L62 6L62 1 212 DBREF 6L62 H 213 432 PDB 6L62 6L62 213 432 DBREF 6L62 A 1 231 UNP F5A4Z4 F5A4Z4_PCV2 1 231 SEQRES 1 L 212 ASN ILE VAL MET THR GLN SER PRO LYS SER MET SER MET SEQRES 2 L 212 SER VAL GLY GLU ARG VAL THR LEU SER CYS LYS ALA SER SEQRES 3 L 212 GLU ASN VAL GLY THR PHE VAL PHE TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO GLU GLN SER PRO GLN LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 212 ASN ARG TYR THR GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 212 GLY SER ALA THR ASP PHE THR LEU THR ILE ASN ASN VAL SEQRES 7 L 212 GLN ALA GLU ASP PHE VAL ASP TYR TYR CYS GLY GLN SER SEQRES 8 L 212 TYR ARG TYR PRO LEU THR PHE ALA ALA GLY THR LYS LEU SEQRES 9 L 212 GLY LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 212 PHE ASN ARG ASN SEQRES 1 H 220 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 220 PRO GLY VAL SER VAL LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 220 TYR THR PHE THR ASP TYR ALA ILE HIS TRP VAL LYS GLN SEQRES 4 H 220 SER HIS ALA LYS SER LEU GLU TRP ILE GLY LEU ILE SER SEQRES 5 H 220 THR TYR TYR GLY ASP ALA THR TYR ASN GLN ASN PHE LYS SEQRES 6 H 220 GLY GLU ALA THR MET THR VAL ASP LYS SER SER SER THR SEQRES 7 H 220 ALA TYR MET GLU LEU ALA ARG LEU THR SER GLU ASP SER SEQRES 8 H 220 ALA ILE TYR TYR CYS ALA ARG GLY PRO PHE SER ARG TYR SEQRES 9 H 220 ASP TYR PHE ALA MET ASP ASN TRP GLY GLN GLY THR SER SEQRES 10 H 220 VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL SEQRES 11 H 220 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 H 220 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 H 220 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 H 220 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 H 220 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 H 220 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 H 220 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL SEQRES 1 A 231 MET THR TYR PRO ARG ARG ARG PHE ARG ARG ARG ARG HIS SEQRES 2 A 231 ARG PRO ARG SER HIS LEU GLY LEU ILE LEU ARG ARG ARG SEQRES 3 A 231 PRO TRP LEU VAL HIS PRO ARG HIS ARG TYR ARG TRP ARG SEQRES 4 A 231 ARG LYS ASN GLY ILE PHE ASN THR ARG LEU SER CYS THR SEQRES 5 A 231 PHE GLY TYR THR VAL LYS ALA THR THR VAL ARG THR PRO SEQRES 6 A 231 SER TRP ALA VAL ASP MET MET ARG PHE ASN ILE ASN ASP SEQRES 7 A 231 PHE VAL PRO PRO GLY GLY GLY THR ASN LYS ILE SER ILE SEQRES 8 A 231 PRO PHE GLU TYR TYR ARG ILE ARG LYS VAL LYS VAL GLU SEQRES 9 A 231 PHE TRP PRO CYS SER PRO ILE THR GLN GLY ASP ARG GLY SEQRES 10 A 231 VAL GLY SER THR ALA VAL ILE LEU ASP ASP ASN PHE VAL SEQRES 11 A 231 THR LYS ALA THR ALA LEU THR TYR ASP PRO TYR VAL ASN SEQRES 12 A 231 TYR SER SER ARG HIS THR ILE PRO GLN PRO PHE SER TYR SEQRES 13 A 231 HIS SER ARG TYR PHE THR PRO LYS PRO VAL LEU ASP SER SEQRES 14 A 231 THR ILE ASP TYR PHE GLN PRO ASN ASN LYS ARG ASN GLN SEQRES 15 A 231 LEU TRP LEU ARG LEU GLN THR SER ALA ASN VAL ASP HIS SEQRES 16 A 231 VAL GLY LEU GLY ILE ALA PHE GLU ASN SER THR TYR ASP SEQRES 17 A 231 GLN ASP TYR ASN ILE ARG VAL THR MET TYR VAL GLN PHE SEQRES 18 A 231 ARG GLU PHE ASN LEU LYS ASP PRO PRO LEU HELIX 1 AA1 GLN L 79 PHE L 83 5 5 HELIX 2 AA2 SER L 121 GLY L 128 1 8 HELIX 3 AA3 LYS L 183 ARG L 188 1 6 HELIX 4 AA4 THR H 240 ASP H 243 5 4 HELIX 5 AA5 GLN H 274 LYS H 277 5 4 HELIX 6 AA6 THR H 299 SER H 303 5 5 HELIX 7 AA7 SER H 377 SER H 379 5 3 HELIX 8 AA8 ILE A 76 VAL A 80 1 5 SHEET 1 AA1 3 MET L 4 SER L 7 0 SHEET 2 AA1 3 VAL L 19 VAL L 29 -1 O LYS L 24 N THR L 5 SHEET 3 AA1 3 PHE L 62 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 1 AA2 5 SER L 10 MET L 13 0 SHEET 2 AA2 5 THR L 102 LEU L 106 1 O GLY L 105 N MET L 11 SHEET 3 AA2 5 VAL L 84 GLN L 90 -1 N VAL L 84 O LEU L 104 SHEET 4 AA2 5 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA2 5 GLN L 45 ILE L 48 -1 O GLN L 45 N GLN L 37 SHEET 1 AA3 4 SER L 10 MET L 13 0 SHEET 2 AA3 4 THR L 102 LEU L 106 1 O GLY L 105 N MET L 11 SHEET 3 AA3 4 VAL L 84 GLN L 90 -1 N VAL L 84 O LEU L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 THR L 114 PHE L 118 0 SHEET 2 AA4 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AA4 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA4 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 4 SER L 153 GLU L 154 0 SHEET 2 AA5 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AA5 4 SER L 191 HIS L 198 -1 O GLU L 195 N LYS L 147 SHEET 4 AA5 4 SER L 201 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AA6 4 GLN H 215 GLN H 218 0 SHEET 2 AA6 4 VAL H 230 SER H 237 -1 O LYS H 235 N GLN H 217 SHEET 3 AA6 4 THR H 290 LEU H 295 -1 O MET H 293 N ILE H 232 SHEET 4 AA6 4 ALA H 280 ASP H 285 -1 N ASP H 285 O THR H 290 SHEET 1 AA7 6 GLU H 222 VAL H 224 0 SHEET 2 AA7 6 THR H 328 VAL H 332 1 O SER H 329 N GLU H 222 SHEET 3 AA7 6 ALA H 304 ALA H 309 -1 N TYR H 306 O THR H 328 SHEET 4 AA7 6 ALA H 245 GLN H 251 -1 N VAL H 249 O TYR H 307 SHEET 5 AA7 6 LEU H 257 SER H 264 -1 O GLU H 258 N LYS H 250 SHEET 6 AA7 6 ALA H 270 TYR H 272 -1 O THR H 271 N LEU H 262 SHEET 1 AA8 4 SER H 341 LEU H 345 0 SHEET 2 AA8 4 VAL H 357 TYR H 366 -1 O LEU H 362 N TYR H 343 SHEET 3 AA8 4 LEU H 395 VAL H 404 -1 O LEU H 398 N VAL H 363 SHEET 4 AA8 4 VAL H 384 THR H 386 -1 N HIS H 385 O SER H 401 SHEET 1 AA9 4 SER H 341 LEU H 345 0 SHEET 2 AA9 4 VAL H 357 TYR H 366 -1 O LEU H 362 N TYR H 343 SHEET 3 AA9 4 LEU H 395 VAL H 404 -1 O LEU H 398 N VAL H 363 SHEET 4 AA9 4 VAL H 390 GLN H 392 -1 N GLN H 392 O LEU H 395 SHEET 1 AB1 3 THR H 372 TRP H 375 0 SHEET 2 AB1 3 THR H 415 HIS H 420 -1 O ASN H 417 N THR H 374 SHEET 3 AB1 3 THR H 425 LYS H 430 -1 O THR H 425 N HIS H 420 SHEET 1 AB2 4 PHE A 45 VAL A 57 0 SHEET 2 AB2 4 GLN A 209 ARG A 222 -1 O MET A 217 N LEU A 49 SHEET 3 AB2 4 TYR A 95 PRO A 107 -1 N LYS A 102 O THR A 216 SHEET 4 AB2 4 HIS A 157 PHE A 161 -1 O PHE A 161 N VAL A 101 SHEET 1 AB3 4 PHE A 45 VAL A 57 0 SHEET 2 AB3 4 GLN A 209 ARG A 222 -1 O MET A 217 N LEU A 49 SHEET 3 AB3 4 TYR A 95 PRO A 107 -1 N LYS A 102 O THR A 216 SHEET 4 AB3 4 LEU A 185 ARG A 186 -1 O LEU A 185 N TYR A 96 SHEET 1 AB4 4 TRP A 67 ASN A 75 0 SHEET 2 AB4 4 ASP A 194 GLU A 203 -1 O PHE A 202 N ALA A 68 SHEET 3 AB4 4 VAL A 118 ALA A 122 -1 N ALA A 122 O GLY A 199 SHEET 4 AB4 4 ARG A 147 PRO A 151 -1 O ILE A 150 N GLY A 119 SHEET 1 AB5 3 TRP A 67 ASN A 75 0 SHEET 2 AB5 3 ASP A 194 GLU A 203 -1 O PHE A 202 N ALA A 68 SHEET 3 AB5 3 LYS A 164 PRO A 165 -1 N LYS A 164 O VAL A 196 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 234 CYS H 308 1555 1555 2.03 SSBOND 4 CYS H 361 CYS H 416 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 -2.93 CISPEP 2 TYR L 94 PRO L 95 0 1.58 CISPEP 3 TYR L 140 PRO L 141 0 0.48 CISPEP 4 PHE H 367 PRO H 368 0 -3.27 CISPEP 5 GLU H 369 PRO H 370 0 -2.16 CISPEP 6 TRP H 409 PRO H 410 0 -0.56 CISPEP 7 GLN A 152 PRO A 153 0 0.26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000