HEADER DNA BINDING PROTEIN 29-OCT-19 6L6S TITLE THE STRUCTURE OF THE UDGX MUTANT H109E CROSSLINKED TO SINGLE-STRANDED TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE SPO1 DNA POLYMERASE-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*TP*GP*(ORP)P*AP*GP*GP*CP*AP*TP*GP*C)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 GENE: MSMEI_0259; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS UDGX, COVALENT COMPLEX, PROTEIN-DNA INTERACTION, DNA REPAIR, KEYWDS 2 GLYCOSYLASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,J.TU,H.ZENG REVDAT 3 22-NOV-23 6L6S 1 REMARK REVDAT 2 12-MAY-21 6L6S 1 JRNL REVDAT 1 04-NOV-20 6L6S 0 JRNL AUTH Q.JIA,H.ZENG,J.TU,L.SUN,W.CAO,W.XIE JRNL TITL STRUCTURAL INSIGHTS INTO AN MSMUDGX MUTANT CAPABLE OF BOTH JRNL TITL 2 CROSSLINKING AND URACIL EXCISION CAPABILITY. JRNL REF DNA REPAIR (AMST) V. 97 03008 2021 JRNL REFN ISSN 1568-7856 JRNL PMID 33248387 JRNL DOI 10.1016/J.DNAREP.2020.103008 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.354 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 25927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.652 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6600 - 4.2923 0.98 2870 142 0.1868 0.2068 REMARK 3 2 4.2923 - 3.4075 1.00 2819 172 0.1737 0.2671 REMARK 3 3 3.4075 - 2.9769 0.99 2847 131 0.2055 0.2471 REMARK 3 4 2.9769 - 2.7048 1.00 2846 147 0.2345 0.3046 REMARK 3 5 2.7048 - 2.5110 1.00 2825 146 0.2426 0.2936 REMARK 3 6 2.5110 - 2.3629 0.98 2797 138 0.2327 0.3069 REMARK 3 7 2.3629 - 2.2446 0.99 2843 129 0.2391 0.2726 REMARK 3 8 2.2446 - 2.1469 0.93 2680 93 0.2374 0.3058 REMARK 3 9 2.1469 - 2.0643 0.77 2194 108 0.2478 0.2936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3433 REMARK 3 ANGLE : 1.135 4743 REMARK 3 CHIRALITY : 0.058 547 REMARK 3 PLANARITY : 0.008 553 REMARK 3 DIHEDRAL : 20.399 1949 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9448 -4.5857 23.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2253 REMARK 3 T33: 0.1847 T12: -0.1397 REMARK 3 T13: -0.0441 T23: 0.0704 REMARK 3 L TENSOR REMARK 3 L11: 1.3896 L22: 1.8992 REMARK 3 L33: 1.6402 L12: 0.8387 REMARK 3 L13: 0.1800 L23: -0.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.2929 S12: -0.4937 S13: -0.2124 REMARK 3 S21: 0.4591 S22: -0.3783 S23: -0.2385 REMARK 3 S31: -0.1189 S32: 0.3139 S33: 0.0393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5774 -2.0853 21.0146 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: -0.0280 REMARK 3 T33: 0.1285 T12: -0.2696 REMARK 3 T13: 0.0896 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.0113 L22: 0.4162 REMARK 3 L33: 1.0154 L12: -0.4231 REMARK 3 L13: 0.6127 L23: 0.1391 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: -0.2287 S13: -0.0424 REMARK 3 S21: 0.3112 S22: -0.2197 S23: 0.1930 REMARK 3 S31: -0.0408 S32: -0.0299 S33: -0.0919 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0749 11.9515 16.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.2243 REMARK 3 T33: 0.2417 T12: -0.2259 REMARK 3 T13: 0.0345 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.0552 L22: 0.6029 REMARK 3 L33: 0.2254 L12: 0.1319 REMARK 3 L13: -0.1014 L23: -0.1239 REMARK 3 S TENSOR REMARK 3 S11: 0.1400 S12: -0.1453 S13: 0.2104 REMARK 3 S21: 0.2087 S22: -0.0278 S23: 0.2155 REMARK 3 S31: -0.1663 S32: 0.0679 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7037 -8.8478 10.6196 REMARK 3 T TENSOR REMARK 3 T11: 0.1232 T22: 0.0073 REMARK 3 T33: 0.1686 T12: 0.0175 REMARK 3 T13: 0.0275 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.1955 L22: 2.6783 REMARK 3 L33: 2.1838 L12: 0.6732 REMARK 3 L13: 0.4100 L23: -0.4246 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.1247 S13: -0.3956 REMARK 3 S21: -0.1463 S22: -0.0902 S23: -0.1736 REMARK 3 S31: 0.3948 S32: 0.2406 S33: 0.1045 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5620 -7.6253 9.0664 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1066 REMARK 3 T33: 0.2246 T12: -0.0626 REMARK 3 T13: 0.0502 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.7571 L22: 5.7253 REMARK 3 L33: 4.0982 L12: 0.2869 REMARK 3 L13: 0.5458 L23: 0.4878 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.4052 S13: -0.0317 REMARK 3 S21: -0.3960 S22: -0.0753 S23: -0.3244 REMARK 3 S31: 0.1973 S32: -0.1043 S33: 0.0594 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7991 -5.9652 12.0877 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.2269 REMARK 3 T33: 0.2586 T12: -0.0420 REMARK 3 T13: -0.0434 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 3.0149 L22: 1.2759 REMARK 3 L33: 2.8082 L12: -1.5823 REMARK 3 L13: 0.0685 L23: -0.8871 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.2164 S13: 0.0790 REMARK 3 S21: -0.2568 S22: 0.0343 S23: 0.6900 REMARK 3 S31: 0.0051 S32: -0.5673 S33: -0.0397 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8630 2.9264 39.6659 REMARK 3 T TENSOR REMARK 3 T11: 0.3185 T22: 0.7989 REMARK 3 T33: 0.3303 T12: -0.1093 REMARK 3 T13: 0.0515 T23: 0.1182 REMARK 3 L TENSOR REMARK 3 L11: 1.1973 L22: 1.7243 REMARK 3 L33: 1.1851 L12: -0.2613 REMARK 3 L13: 0.6006 L23: 0.6438 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: -0.5659 S13: -0.0274 REMARK 3 S21: -0.0474 S22: -0.1465 S23: -0.5689 REMARK 3 S31: -0.1812 S32: 1.0190 S33: 0.0562 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1617 7.7921 37.8149 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.4950 REMARK 3 T33: 0.1527 T12: -0.1754 REMARK 3 T13: 0.0226 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.0792 L22: 1.9682 REMARK 3 L33: 1.2971 L12: -0.7758 REMARK 3 L13: 0.9354 L23: 1.0997 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0665 S13: 0.2806 REMARK 3 S21: -0.4065 S22: -0.0132 S23: -0.2127 REMARK 3 S31: -0.4404 S32: 0.3736 S33: 0.0640 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2087 6.7128 45.5778 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.4992 REMARK 3 T33: 0.2273 T12: -0.1022 REMARK 3 T13: 0.0091 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.6481 L22: 1.1575 REMARK 3 L33: 3.2023 L12: -0.1944 REMARK 3 L13: 0.0853 L23: -0.6376 REMARK 3 S TENSOR REMARK 3 S11: 0.1954 S12: -0.7141 S13: 0.2503 REMARK 3 S21: 0.2262 S22: -0.1487 S23: -0.1526 REMARK 3 S31: -0.5006 S32: 0.2236 S33: -0.0313 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6652 9.9276 4.3263 REMARK 3 T TENSOR REMARK 3 T11: 0.4081 T22: 0.1006 REMARK 3 T33: 0.3349 T12: 0.0023 REMARK 3 T13: 0.1187 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 3.3518 L22: 1.7795 REMARK 3 L33: 3.0504 L12: 1.7455 REMARK 3 L13: -0.8547 L23: -2.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.2803 S12: 0.1416 S13: 0.6142 REMARK 3 S21: 0.0037 S22: 0.0220 S23: -0.0534 REMARK 3 S31: -0.6341 S32: -0.0698 S33: -0.2632 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5967 -8.0055 53.1319 REMARK 3 T TENSOR REMARK 3 T11: 0.4813 T22: 0.5876 REMARK 3 T33: 0.3808 T12: -0.1814 REMARK 3 T13: -0.0182 T23: 0.1270 REMARK 3 L TENSOR REMARK 3 L11: 2.4558 L22: 2.0962 REMARK 3 L33: 4.6366 L12: -0.9144 REMARK 3 L13: -0.6773 L23: -0.5586 REMARK 3 S TENSOR REMARK 3 S11: -0.1414 S12: -0.5795 S13: -0.6722 REMARK 3 S21: 0.6365 S22: -0.0808 S23: 0.1922 REMARK 3 S31: 0.9806 S32: -0.4323 S33: 0.2071 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN D REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 12:13 OR (RESID 14 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD1 OR NAME CD2)) OR RESSEQ 15 REMARK 3 OR (RESID 16 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME C OR NAME O )) OR RESSEQ REMARK 3 17:22 OR (RESID 23 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 24 OR (RESID 25 AND (NAME N OR REMARK 3 NAME CA OR NAME CB OR NAME C OR NAME O )) REMARK 3 OR RESSEQ 26:28 OR (RESID 29 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 CD1 OR NAME CD2)) OR (RESID 30 AND (NAME REMARK 3 N OR NAME CA OR NAME CB OR NAME C OR NAME REMARK 3 O )) OR (RESID 31 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O )) OR RESSEQ 32 OR REMARK 3 (RESID 33 AND (NAME N OR NAME CA OR NAME REMARK 3 CB )) OR (RESID 34 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME OG1 OR NAME CG2)) OR REMARK 3 RESSEQ 35:42 OR (RESID 43 AND (NAME N OR REMARK 3 NAME CA OR NAME CB OR NAME CG OR NAME CD REMARK 3 OR NAME NE OR NAME CZ OR NAME NH1 OR NAME REMARK 3 NH2)) OR RESSEQ 44:45 OR (RESID 46 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 47:83 OR (RESID 84 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 C OR NAME O )) OR RESSEQ 85:96 OR (RESID REMARK 3 97 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME CE OR NAME NZ ) REMARK 3 ) OR RESSEQ 98:99 OR (RESID 100 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 (RESID 106 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O )) OR (RESID 107 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME NE OR NAME CZ OR NAME NH1 OR REMARK 3 NAME NH2)) OR (RESID 108 AND (NAME N OR REMARK 3 NAME CA OR NAME CB OR NAME CG1 OR NAME REMARK 3 CD1)) OR RESSEQ 109 OR (RESID 110 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME C REMARK 3 OR NAME O )) OR RESSEQ 111:113 OR (RESID REMARK 3 115 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME C OR NAME O )) OR RESSEQ 116:121 OR REMARK 3 (RESID 122 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 123: REMARK 3 124 OR (RESID 125 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 126:131 OR (RESID 132 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME OE1 OR NAME OE2)) OR RESSEQ REMARK 3 133:147 OR (RESID 148 AND (NAME N OR NAME REMARK 3 CA OR NAME CB OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 149:150 OR (RESID 151 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME C OR NAME O REMARK 3 )) OR RESSEQ 152 OR RESSEQ 154:155 OR REMARK 3 RESSEQ 157:163 OR (RESID 164 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 (RESID 165 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O )) OR (RESID 166 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 (RESID 167 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR RESSEQ 168: REMARK 3 169 OR (RESID 170 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME CG OR NAME OD1 OR NAME REMARK 3 OD2)) OR RESSEQ 171:189 OR (RESID 190 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME CG REMARK 3 OR NAME CD OR NAME NE OR NAME CZ OR NAME REMARK 3 NH1 OR NAME NH2)) OR (RESID 191 AND (NAME REMARK 3 N OR NAME CA OR NAME CB OR NAME CG OR REMARK 3 NAME CD OR NAME OE1 OR NAME OE2)) OR REMARK 3 RESSEQ 192:201 OR RESSEQ 203:205 OR REMARK 3 (RESID 206 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR (RESID 207 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O )))) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 12:13 OR (RESID 14 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD1 OR NAME CD2)) OR RESSEQ 15: REMARK 3 28 OR (RESID 29 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME CG OR NAME CD1 OR NAME REMARK 3 CD2)) OR RESSEQ 30 OR (RESID 31 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 32 OR (RESID 33 AND (NAME O OR REMARK 3 NAME N OR NAME C )) OR (RESID 34 AND REMARK 3 (NAME N OR NAME CA OR NAME CB OR NAME OG1 REMARK 3 OR NAME CG2)) OR RESSEQ 35:42 OR (RESID REMARK 3 43 AND (NAME N OR NAME CA OR NAME CB OR REMARK 3 NAME CG OR NAME CD OR NAME NE OR NAME CZ REMARK 3 OR NAME NH1 OR NAME NH2)) OR RESSEQ 44:84 REMARK 3 OR (RESID 85 AND (NAME N OR NAME CA OR REMARK 3 NAME CB OR NAME C OR NAME O )) OR RESSEQ REMARK 3 86:96 OR (RESID 97 AND (NAME N OR NAME CA REMARK 3 OR NAME CB OR NAME CG OR NAME CD OR NAME REMARK 3 CE OR NAME NZ )) OR RESSEQ 98:99 OR REMARK 3 (RESID 100 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O )) OR (RESID 106 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 (RESID 107 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG OR NAME CD OR NAME NE OR REMARK 3 NAME CZ OR NAME NH1 OR NAME NH2)) OR REMARK 3 (RESID 108 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME CG1 OR NAME CD1)) OR RESSEQ REMARK 3 109:113 OR RESSEQ 115:131 OR (RESID 132 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 CG OR NAME CD OR NAME OE1 OR NAME OE2)) REMARK 3 OR RESSEQ 133:152 OR RESSEQ 154:155 OR REMARK 3 RESSEQ 157:163 OR (RESID 164 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 (RESID 165 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O )) OR (RESID 166 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O )) OR REMARK 3 RESSEQ 167:169 OR (RESID 170 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 OD1 OR NAME OD2)) OR RESSEQ 171:187 OR REMARK 3 (RESID 188 AND (NAME N OR NAME CA OR NAME REMARK 3 CB OR NAME C OR NAME O )) OR (RESID 189 REMARK 3 AND (NAME N OR NAME CA OR NAME CB OR NAME REMARK 3 C OR NAME O )) OR (RESID 190 AND (NAME N REMARK 3 OR NAME CA OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME NE OR NAME CZ OR NAME NH1 OR REMARK 3 NAME NH2)) OR (RESID 191 AND (NAME N OR REMARK 3 NAME CA OR NAME CB OR NAME CG OR NAME CD REMARK 3 OR NAME OE1 OR NAME OE2)) OR RESSEQ 192: REMARK 3 201 OR RESSEQ 203:206 OR (RESID 207 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O ))) REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6IOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.15 M SODIUM MALONATE PH 7.0 AND 3.8% REMARK 280 MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.13250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.17400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.13250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.17400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 GLN B 5 REMARK 465 ASP B 6 REMARK 465 PHE B 7 REMARK 465 VAL B 8 REMARK 465 PRO B 9 REMARK 465 HIS B 10 REMARK 465 THR B 11 REMARK 465 ALA B 101 REMARK 465 ALA B 102 REMARK 465 GLY B 103 REMARK 465 GLY B 104 REMARK 465 LYS B 105 REMARK 465 ARG B 208 REMARK 465 PRO B 209 REMARK 465 DT C 1 REMARK 465 DC C 2 REMARK 465 DA C 3 REMARK 465 DA C 4 REMARK 465 DG C 5 REMARK 465 DT D 1 REMARK 465 DC D 2 REMARK 465 DA D 3 REMARK 465 DA D 4 REMARK 465 DG D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 85 CG OD1 OD2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 THR B 115 OG1 CG2 REMARK 470 PRO B 122 CG CD REMARK 470 ILE B 125 CG1 CG2 CD1 REMARK 470 LEU B 148 CG CD1 CD2 REMARK 470 ASP B 151 CG OD1 OD2 REMARK 470 VAL B 164 CG1 CG2 REMARK 470 ASP B 165 CG OD1 OD2 REMARK 470 VAL B 167 CG1 CG2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ASP B 206 CG OD1 OD2 REMARK 470 VAL B 207 CG1 CG2 REMARK 470 ORP C 8 O1 REMARK 470 ORP D 8 O1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 109 C1 ORP D 8 1.45 REMARK 500 OE2 GLU A 109 C1 ORP C 8 1.47 REMARK 500 OE2 GLU A 109 O4 ORP C 8 1.84 REMARK 500 NH1 ARG A 31 O HOH A 401 2.06 REMARK 500 OE2 GLU B 191 O HOH B 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 7 O3' ORP C 8 P -0.085 REMARK 500 DG D 7 O3' ORP D 8 P -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 7 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT D 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 33 -99.03 -113.64 REMARK 500 THR B 34 -51.04 -144.37 REMARK 500 ASP B 170 59.39 -115.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 43 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 445 DISTANCE = 7.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 SF4 A 301 S1 115.3 REMARK 620 3 SF4 A 301 S2 125.7 94.9 REMARK 620 4 SF4 A 301 S4 129.1 86.9 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 27 SG REMARK 620 2 SF4 A 301 S2 135.1 REMARK 620 3 SF4 A 301 S3 105.9 96.4 REMARK 620 4 SF4 A 301 S4 125.2 93.0 89.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 SF4 A 301 S1 122.2 REMARK 620 3 SF4 A 301 S3 133.5 90.3 REMARK 620 4 SF4 A 301 S4 121.7 86.4 89.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 120 SG REMARK 620 2 SF4 A 301 S1 125.3 REMARK 620 3 SF4 A 301 S2 119.5 94.4 REMARK 620 4 SF4 A 301 S3 122.6 90.4 97.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 24 SG REMARK 620 2 SF4 B 301 S1 112.3 REMARK 620 3 SF4 B 301 S2 142.4 84.9 REMARK 620 4 SF4 B 301 S4 123.9 85.6 89.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 27 SG REMARK 620 2 SF4 B 301 S2 122.2 REMARK 620 3 SF4 B 301 S3 115.3 84.9 REMARK 620 4 SF4 B 301 S4 141.1 89.6 86.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 95 ND1 REMARK 620 2 SF4 B 301 S1 129.1 REMARK 620 3 SF4 B 301 S3 135.1 84.6 REMARK 620 4 SF4 B 301 S4 119.4 86.1 87.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 120 SG REMARK 620 2 SF4 B 301 S1 114.3 REMARK 620 3 SF4 B 301 S2 122.1 85.3 REMARK 620 4 SF4 B 301 S3 146.4 84.5 85.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues DG C 7 REMARK 800 through GLU A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-Saccharide ORP C 8 and DA C REMARK 800 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues DG D 7 REMARK 800 through GLU B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-Saccharide ORP D 8 and DA D REMARK 800 9 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE GENEBANK ACCESSION NUMBER IS AWT51284.1. FOR REMARK 999 THE PROTEIN. DBREF 6L6S A 1 209 UNP I7F541 I7F541_MYCS2 7 215 DBREF 6L6S B 1 209 UNP I7F541 I7F541_MYCS2 7 215 DBREF 6L6S C 1 16 PDB 6L6S 6L6S 1 16 DBREF 6L6S D 1 16 PDB 6L6S 6L6S 1 16 SEQADV 6L6S GLY A -2 UNP I7F541 EXPRESSION TAG SEQADV 6L6S SER A -1 UNP I7F541 EXPRESSION TAG SEQADV 6L6S HIS A 0 UNP I7F541 EXPRESSION TAG SEQADV 6L6S GLU A 109 UNP I7F541 HIS 115 ENGINEERED MUTATION SEQADV 6L6S GLY B -2 UNP I7F541 EXPRESSION TAG SEQADV 6L6S SER B -1 UNP I7F541 EXPRESSION TAG SEQADV 6L6S HIS B 0 UNP I7F541 EXPRESSION TAG SEQADV 6L6S GLU B 109 UNP I7F541 HIS 115 ENGINEERED MUTATION SEQRES 1 A 212 GLY SER HIS MET ALA GLY ALA GLN ASP PHE VAL PRO HIS SEQRES 2 A 212 THR ALA ASP LEU ALA GLU LEU ALA ALA ALA ALA GLY GLU SEQRES 3 A 212 CYS ARG GLY CYS GLY LEU TYR ARG ASP ALA THR GLN ALA SEQRES 4 A 212 VAL PHE GLY ALA GLY GLY ARG SER ALA ARG ILE MET MET SEQRES 5 A 212 ILE GLY GLU GLN PRO GLY ASP LYS GLU ASP LEU ALA GLY SEQRES 6 A 212 LEU PRO PHE VAL GLY PRO ALA GLY ARG LEU LEU ASP ARG SEQRES 7 A 212 ALA LEU GLU ALA ALA ASP ILE ASP ARG ASP ALA LEU TYR SEQRES 8 A 212 VAL THR ASN ALA VAL LYS HIS PHE LYS PHE THR ARG ALA SEQRES 9 A 212 ALA GLY GLY LYS ARG ARG ILE GLU LYS THR PRO SER ARG SEQRES 10 A 212 THR GLU VAL VAL ALA CYS ARG PRO TRP LEU ILE ALA GLU SEQRES 11 A 212 MET THR SER VAL GLU PRO ASP VAL VAL VAL LEU LEU GLY SEQRES 12 A 212 ALA THR ALA ALA LYS ALA LEU LEU GLY ASN ASP PHE ARG SEQRES 13 A 212 VAL THR GLN HIS ARG GLY GLU VAL LEU HIS VAL ASP ASP SEQRES 14 A 212 VAL PRO GLY ASP PRO ALA LEU VAL ALA THR VAL HIS PRO SEQRES 15 A 212 SER SER LEU LEU ARG GLY PRO LYS GLU GLU ARG GLU SER SEQRES 16 A 212 ALA PHE ALA GLY LEU VAL ASP ASP LEU ARG VAL ALA ALA SEQRES 17 A 212 ASP VAL ARG PRO SEQRES 1 B 212 GLY SER HIS MET ALA GLY ALA GLN ASP PHE VAL PRO HIS SEQRES 2 B 212 THR ALA ASP LEU ALA GLU LEU ALA ALA ALA ALA GLY GLU SEQRES 3 B 212 CYS ARG GLY CYS GLY LEU TYR ARG ASP ALA THR GLN ALA SEQRES 4 B 212 VAL PHE GLY ALA GLY GLY ARG SER ALA ARG ILE MET MET SEQRES 5 B 212 ILE GLY GLU GLN PRO GLY ASP LYS GLU ASP LEU ALA GLY SEQRES 6 B 212 LEU PRO PHE VAL GLY PRO ALA GLY ARG LEU LEU ASP ARG SEQRES 7 B 212 ALA LEU GLU ALA ALA ASP ILE ASP ARG ASP ALA LEU TYR SEQRES 8 B 212 VAL THR ASN ALA VAL LYS HIS PHE LYS PHE THR ARG ALA SEQRES 9 B 212 ALA GLY GLY LYS ARG ARG ILE GLU LYS THR PRO SER ARG SEQRES 10 B 212 THR GLU VAL VAL ALA CYS ARG PRO TRP LEU ILE ALA GLU SEQRES 11 B 212 MET THR SER VAL GLU PRO ASP VAL VAL VAL LEU LEU GLY SEQRES 12 B 212 ALA THR ALA ALA LYS ALA LEU LEU GLY ASN ASP PHE ARG SEQRES 13 B 212 VAL THR GLN HIS ARG GLY GLU VAL LEU HIS VAL ASP ASP SEQRES 14 B 212 VAL PRO GLY ASP PRO ALA LEU VAL ALA THR VAL HIS PRO SEQRES 15 B 212 SER SER LEU LEU ARG GLY PRO LYS GLU GLU ARG GLU SER SEQRES 16 B 212 ALA PHE ALA GLY LEU VAL ASP ASP LEU ARG VAL ALA ALA SEQRES 17 B 212 ASP VAL ARG PRO SEQRES 1 C 16 DT DC DA DA DG DT DG ORP DA DG DG DC DA SEQRES 2 C 16 DT DG DC SEQRES 1 D 16 DT DC DA DA DG DT DG ORP DA DG DG DC DA SEQRES 2 D 16 DT DG DC HET ORP C 8 11 HET ORP D 8 11 HET SF4 A 301 8 HET SF4 B 301 8 HETNAM ORP 2-DEOXY-5-PHOSPHONO-RIBOSE HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 3 ORP 2(C5 H11 O7 P) FORMUL 5 SF4 2(FE4 S4) FORMUL 7 HOH *199(H2 O) HELIX 1 AA1 GLY A 3 VAL A 8 5 6 HELIX 2 AA2 ASP A 13 GLY A 22 1 10 HELIX 3 AA3 CYS A 27 ARG A 31 5 5 HELIX 4 AA4 GLY A 55 GLY A 62 1 8 HELIX 5 AA5 GLY A 67 ALA A 80 1 14 HELIX 6 AA6 ASP A 83 ASP A 85 5 3 HELIX 7 AA7 SER A 113 GLU A 132 1 20 HELIX 8 AA8 GLY A 140 GLY A 149 1 10 HELIX 9 AA9 ARG A 153 ARG A 158 1 6 HELIX 10 AB1 HIS A 178 GLY A 185 1 8 HELIX 11 AB2 PRO A 186 GLU A 188 5 3 HELIX 12 AB3 GLU A 189 ASP A 206 1 18 HELIX 13 AB4 ASP B 13 GLY B 22 1 10 HELIX 14 AB5 GLY B 28 ALA B 33 1 6 HELIX 15 AB6 GLY B 55 GLY B 62 1 8 HELIX 16 AB7 GLY B 67 ALA B 80 1 14 HELIX 17 AB8 SER B 113 GLU B 132 1 20 HELIX 18 AB9 GLY B 140 GLY B 149 1 10 HELIX 19 AC1 ARG B 153 ARG B 158 1 6 HELIX 20 AC2 HIS B 178 GLY B 185 1 8 HELIX 21 AC3 PRO B 186 ASP B 206 1 21 SHEET 1 AA1 5 LEU A 87 ASN A 91 0 SHEET 2 AA1 5 ILE A 47 GLY A 51 1 N MET A 49 O THR A 90 SHEET 3 AA1 5 VAL A 135 LEU A 139 1 O VAL A 137 N MET A 48 SHEET 4 AA1 5 ALA A 172 THR A 176 1 O VAL A 174 N VAL A 136 SHEET 5 AA1 5 VAL A 161 LEU A 162 -1 N LEU A 162 O LEU A 173 SHEET 1 AA2 2 PHE A 98 THR A 99 0 SHEET 2 AA2 2 ILE A 108 GLU A 109 -1 O ILE A 108 N THR A 99 SHEET 1 AA3 6 ALA B 40 GLY B 41 0 SHEET 2 AA3 6 LEU B 87 ASN B 91 -1 O VAL B 89 N ALA B 40 SHEET 3 AA3 6 ILE B 47 GLY B 51 1 N MET B 49 O THR B 90 SHEET 4 AA3 6 VAL B 135 LEU B 139 1 O LEU B 139 N ILE B 50 SHEET 5 AA3 6 ALA B 172 THR B 176 1 O ALA B 172 N VAL B 136 SHEET 6 AA3 6 VAL B 161 LEU B 162 -1 N LEU B 162 O LEU B 173 SHEET 1 AA4 2 PHE B 98 THR B 99 0 SHEET 2 AA4 2 ILE B 108 GLU B 109 -1 O ILE B 108 N THR B 99 LINK O3' DG C 7 P ORP C 8 1555 1555 1.52 LINK O3 ORP C 8 P DA C 9 1555 1555 1.61 LINK O3' DG D 7 P ORP D 8 1555 1555 1.52 LINK O3 ORP D 8 P DA D 9 1555 1555 1.56 LINK SG CYS A 24 FE3 SF4 A 301 1555 1555 2.22 LINK SG CYS A 27 FE1 SF4 A 301 1555 1555 2.30 LINK ND1 HIS A 95 FE2 SF4 A 301 1555 1555 1.92 LINK SG CYS A 120 FE4 SF4 A 301 1555 1555 2.25 LINK SG CYS B 24 FE3 SF4 B 301 1555 1555 2.38 LINK SG CYS B 27 FE1 SF4 B 301 1555 1555 2.23 LINK ND1 HIS B 95 FE2 SF4 B 301 1555 1555 1.75 LINK SG CYS B 120 FE4 SF4 B 301 1555 1555 1.94 SITE 1 AC1 6 CYS A 24 GLY A 26 CYS A 27 HIS A 95 SITE 2 AC1 6 CYS A 120 TRP A 123 SITE 1 AC2 7 CYS B 24 GLY B 26 CYS B 27 TYR B 30 SITE 2 AC2 7 HIS B 95 CYS B 120 TRP B 123 SITE 1 AC3 36 ALA A 4 GLN A 5 ASP A 6 HIS A 10 SITE 2 AC3 36 THR A 11 GLU A 23 ARG A 25 GLU A 52 SITE 3 AC3 36 GLN A 53 PRO A 68 ALA A 69 PHE A 96 SITE 4 AC3 36 LYS A 97 ILE A 108 LYS A 110 TRP A 123 SITE 5 AC3 36 ALA A 126 HIS A 178 SER A 180 SER A 181 SITE 6 AC3 36 LEU A 183 ARG A 184 HOH A 408 HOH A 413 SITE 7 AC3 36 HOH A 415 HOH A 418 HOH A 464 HOH A 467 SITE 8 AC3 36 DT C 6 DG C 10 HOH C 104 HOH C 106 SITE 9 AC3 36 HOH C 108 HOH C 119 HOH C 122 HOH C 123 SITE 1 AC4 29 ALA A 4 GLN A 5 ASP A 6 PHE A 7 SITE 2 AC4 29 HIS A 10 THR A 11 GLU A 52 GLN A 53 SITE 3 AC4 29 PRO A 68 ALA A 69 PHE A 96 LYS A 97 SITE 4 AC4 29 ILE A 108 LYS A 110 ALA A 126 HIS A 178 SITE 5 AC4 29 SER A 180 SER A 181 ARG A 184 HOH A 408 SITE 6 AC4 29 HOH A 413 HOH A 415 HOH A 418 HOH A 467 SITE 7 AC4 29 DG C 7 DG C 10 HOH C 104 HOH C 122 SITE 8 AC4 29 HOH C 123 SITE 1 AC5 24 GLU B 52 GLN B 53 PRO B 54 GLY B 55 SITE 2 AC5 24 GLY B 67 PRO B 68 ALA B 69 PHE B 96 SITE 3 AC5 24 LYS B 97 ILE B 108 LYS B 110 HIS B 178 SITE 4 AC5 24 SER B 180 SER B 181 LEU B 183 ARG B 184 SITE 5 AC5 24 HOH B 417 DT D 6 DG D 10 HOH D 102 SITE 6 AC5 24 HOH D 104 HOH D 110 HOH D 113 HOH D 114 SITE 1 AC6 16 GLY B 67 PRO B 68 ALA B 69 GLU B 109 SITE 2 AC6 16 HIS B 178 SER B 180 SER B 181 ARG B 184 SITE 3 AC6 16 HOH B 417 DG D 7 DG D 10 HOH D 102 SITE 4 AC6 16 HOH D 109 HOH D 110 HOH D 113 HOH D 114 CRYST1 44.265 82.348 122.444 90.00 94.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022591 0.000000 0.001947 0.00000 SCALE2 0.000000 0.012144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008197 0.00000