data_6L76
#
_entry.id 6L76
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6L76 pdb_00006l76 10.2210/pdb6l76/pdb
WWPDB D_1300014309 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6L76
_pdbx_database_status.recvd_initial_deposition_date 2019-10-31
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Hou, M.H.' 1 ?
'Jhan, C.R.' 2 ?
'Satange, R.B.' 3 ?
'Lin, S.M.' 4 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_id_ASTM NARHAD
_citation.journal_id_CSD 0389
_citation.journal_id_ISSN 1362-4962
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 49
_citation.language ?
_citation.page_first 9526
_citation.page_last 9538
_citation.title
;Targeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction.
;
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1093/nar/gkab227
_citation.pdbx_database_id_PubMed 33836081
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Jhan, C.R.' 1 ?
primary 'Satange, R.' 2 ?
primary 'Wang, S.C.' 3 ?
primary 'Zeng, J.Y.' 4 ?
primary 'Horng, Y.C.' 5 ?
primary 'Jin, P.' 6 0000-0001-6137-6659
primary 'Neidle, S.' 7 0000-0003-0622-6548
primary 'Hou, M.H.' 8 0000-0003-4170-1527
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 6L76
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 64.718
_cell.length_a_esd ?
_cell.length_b 64.718
_cell.length_b_esd ?
_cell.length_c 246.578
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 24
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6L76
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 179
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 65 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*TP*GP*GP*GP*CP*CP*GP*AP*A)-3')
;
3085.028 2 ? ? ? ?
2 polymer syn
;DNA (5'-D(*TP*TP*CP*GP*GP*CP*CP*CP*AP*A)-3')
;
3004.980 2 ? ? ? ?
3 branched man
'2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 4 ?
? ? ?
4 branched man
;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
;
432.506 4 ? ? ? ?
5 non-polymer syn
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410
4 ? ? ? ?
6 non-polymer syn 'NICKEL (II) ION' 58.693 7 ? ? ? ?
7 water nat water 18.015 42 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DG)(DC)(DC)(DG)(DA)(DA)' TTGGGCCGAA A,D ?
2 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DG)(DG)(DC)(DC)(DC)(DA)(DA)' TTCGGCCCAA B,C ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DT n
1 3 DG n
1 4 DG n
1 5 DG n
1 6 DC n
1 7 DC n
1 8 DG n
1 9 DA n
1 10 DA n
2 1 DT n
2 2 DT n
2 3 DC n
2 4 DG n
2 5 DG n
2 6 DC n
2 7 DC n
2 8 DC n
2 9 DA n
2 10 DA n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 10 'synthetic construct' ? 32630 ?
2 1 sample 1 10 'synthetic construct' ? 32630 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 PDB 6L76 6L76 ? 1 ? 1
2 PDB 6L76 6L76 ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 6L76 A 1 ? 10 ? 6L76 1 ? 10 ? 1 10
2 2 6L76 B 1 ? 10 ? 6L76 11 ? 20 ? 11 20
3 2 6L76 C 1 ? 10 ? 6L76 1 ? 10 ? 1 10
4 1 6L76 D 1 ? 10 ? 6L76 11 ? 20 ? 11 20
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose
;
'C7 H14 O4' 162.184
ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate'
'[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194
CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158
CPH non-polymer .
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None
'C21 H24 O9' 420.410
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose
;
'C9 H16 O5' 204.220
HOH non-polymer . WATER ? 'H2 O' 18.015
NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6L76
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 6.12
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 79.90
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 277.15
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
'1mM TTGGGCCGAA, 1 mM TTCGGCCCAA, 3 mM Chromomycin A3, 6 mM NiSO4, 2.5 mM Spermine,40 mM Sodium cacodylate (pH=7), 4 % PEG 400'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'RAYONIX MX300HE'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2016-03-09
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.99984
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'NSRRC BEAMLINE BL15A1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.99984
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL15A1
_diffrn_source.pdbx_synchrotron_site NSRRC
#
_reflns.B_iso_Wilson_estimate 74.540
_reflns.entry_id 6L76
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.940
_reflns.d_resolution_low 30.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 12146
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 98.600
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 9.300
_reflns.pdbx_Rmerge_I_obs 0.067
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 12.300
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.909
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.071
_reflns.pdbx_Rpim_I_all 0.023
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
2.940 3.040 ? ? ? ? ? ? 669 100.000 ? ? ? ? 0.509 ? ? ? ? ? ? ? ? 10.400 ? 0.689 ? ? 0.535 0.162 ? 1 1 0.936 ? ?
3.040 3.170 ? ? ? ? ? ? 684 100.000 ? ? ? ? 0.235 ? ? ? ? ? ? ? ? 10.200 ? 0.805 ? ? 0.248 0.076 ? 2 1 0.989 ? ?
3.170 3.310 ? ? ? ? ? ? 698 100.000 ? ? ? ? 0.151 ? ? ? ? ? ? ? ? 9.900 ? 0.931 ? ? 0.159 0.050 ? 3 1 0.995 ? ?
3.310 3.490 ? ? ? ? ? ? 698 100.000 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 9.800 ? 0.950 ? ? 0.133 0.042 ? 4 1 0.996 ? ?
3.490 3.700 ? ? ? ? ? ? 695 100.000 ? ? ? ? 0.117 ? ? ? ? ? ? ? ? 9.600 ? 1.066 ? ? 0.124 0.040 ? 5 1 0.994 ? ?
3.700 3.990 ? ? ? ? ? ? 712 100.000 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? 9.500 ? 1.074 ? ? 0.097 0.031 ? 6 1 0.997 ? ?
3.990 4.390 ? ? ? ? ? ? 707 99.600 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? 9.000 ? 1.058 ? ? 0.070 0.023 ? 7 1 0.998 ? ?
4.390 5.020 ? ? ? ? ? ? 722 99.000 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 8.500 ? 1.066 ? ? 0.064 0.022 ? 8 1 0.996 ? ?
5.020 6.320 ? ? ? ? ? ? 730 96.800 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 8.500 ? 0.870 ? ? 0.050 0.017 ? 9 1 0.998 ? ?
6.320 30.000 ? ? ? ? ? ? 776 91.900 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 7.800 ? 0.576 ? ? 0.035 0.012 ? 10 1 0.999 ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 214.510
_refine.B_iso_mean 93.8655
_refine.B_iso_min 61.480
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6L76
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.9400
_refine.ls_d_res_low 25.5110
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 12146
_refine.ls_number_reflns_R_free 1248
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.0500
_refine.ls_percent_reflns_R_free 10.2700
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2389
_refine.ls_R_factor_R_free 0.2762
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2346
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.340
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 1VAQ
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 25.8700
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.3300
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 2.9400
_refine_hist.d_res_low 25.5110
_refine_hist.number_atoms_solvent 52
_refine_hist.number_atoms_total 1178
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 39
_refine_hist.pdbx_B_iso_mean_ligand 88.46
_refine_hist.pdbx_B_iso_mean_solvent 110.04
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 787
_refine_hist.pdbx_number_atoms_ligand 339
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.013 ? 1264 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.380 ? 1843 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.578 ? 236 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.009 ? 59 ? f_plane_restr ? ?
'X-RAY DIFFRACTION' ? 29.415 ? 418 ? f_dihedral_angle_d ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 2.94 3.0574 . . 136 1207 99.0000 . . . 0.3086 0.0000 0.2875 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.0574 3.1963 . . 138 1219 100.0000 . . . 0.2651 0.0000 0.2232 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.1963 3.3645 . . 137 1222 100.0000 . . . 0.2844 0.0000 0.1966 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.3645 3.5748 . . 142 1232 100.0000 . . . 0.2299 0.0000 0.2091 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.5748 3.8499 . . 138 1214 100.0000 . . . 0.2799 0.0000 0.2234 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.8499 4.2358 . . 141 1220 100.0000 . . . 0.2473 0.0000 0.2175 . . . . . . . . . . .
'X-RAY DIFFRACTION' 4.2358 4.8451 . . 142 1213 100.0000 . . . 0.2493 0.0000 0.2071 . . . . . . . . . . .
'X-RAY DIFFRACTION' 4.8451 6.0905 . . 140 1190 98.0000 . . . 0.2852 0.0000 0.2309 . . . . . . . . . . .
'X-RAY DIFFRACTION' 6.0905 25.51 . . 134 1181 95.0000 . . . 0.3213 0.0000 0.2894 . . . . . . . . . . .
#
_struct.entry_id 6L76
_struct.title
'Crystal structure of the Ni(II)(Chro)2-d(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 angstrom resolution'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6L76
_struct_keywords.text 'Duplex DNA, GGGGCC motif, nucleotide flipping-out, Hoogsteen base pair, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 1 ?
E N N 3 ?
F N N 4 ?
G N N 4 ?
H N N 3 ?
I N N 3 ?
J N N 4 ?
K N N 3 ?
L N N 4 ?
M N N 5 ?
N N N 6 ?
O N N 6 ?
P N N 5 ?
Q N N 6 ?
R N N 5 ?
S N N 6 ?
T N N 5 ?
U N N 6 ?
V N N 6 ?
W N N 6 ?
X N N 7 ?
Y N N 7 ?
Z N N 7 ?
AA N N 7 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.374
? ?
covale2 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.374
? ?
covale3 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.375
? ?
covale4 covale one ? G CDR . C3 ? ? ? 1_555 G CDR . O1 ? ? G CDR 1 G CDR 2 1_555 ? ? ? ? ? ? ? 1.373
? ?
covale5 covale one ? G CDR . C3 ? ? ? 1_555 G ERI . O1 ? ? G CDR 2 G ERI 3 1_555 ? ? ? ? ? ? ? 1.375
? ?
covale6 covale one ? H ARI . C3 ? ? ? 1_555 H 1GL . O1 ? ? H ARI 1 H 1GL 2 1_555 ? ? ? ? ? ? ? 1.375
? ?
covale7 covale one ? I ARI . C3 ? ? ? 1_555 I 1GL . O1 ? ? I ARI 1 I 1GL 2 1_555 ? ? ? ? ? ? ? 1.373
? ?
covale8 covale one ? J CDR . C3 ? ? ? 1_555 J CDR . O1 ? ? J CDR 1 J CDR 2 1_555 ? ? ? ? ? ? ? 1.375
? ?
covale9 covale one ? J CDR . C3 ? ? ? 1_555 J ERI . O1 ? ? J CDR 2 J ERI 3 1_555 ? ? ? ? ? ? ? 1.373
? ?
covale10 covale one ? K ARI . C3 ? ? ? 1_555 K 1GL . O1 ? ? K ARI 1 K 1GL 2 1_555 ? ? ? ? ? ? ? 1.374
? ?
covale11 covale one ? L CDR . C3 ? ? ? 1_555 L CDR . O1 ? ? L CDR 1 L CDR 2 1_555 ? ? ? ? ? ? ? 1.440
? ?
covale12 covale one ? L CDR . C3 ? ? ? 1_555 L ERI . O1 ? ? L CDR 2 L ERI 3 1_555 ? ? ? ? ? ? ? 1.374
? ?
metalc1 metalc ? ? A DG 5 N7 ? ? ? 1_555 O NI . NI ? ? A DG 5 A NI 108 1_555 ? ? ? ? ? ? ? 2.228
? ?
metalc2 metalc ? ? M CPH . O1 ? ? ? 1_555 N NI . NI ? ? A CPH 103 A NI 107 1_555 ? ? ? ? ? ? ? 1.979
? ?
metalc3 metalc ? ? M CPH . O9 ? ? ? 1_555 N NI . NI ? ? A CPH 103 A NI 107 1_555 ? ? ? ? ? ? ? 1.763
? ?
metalc4 metalc ? ? N NI . NI ? ? ? 1_555 P CPH . O1 ? ? A NI 107 B CPH 106 1_555 ? ? ? ? ? ? ? 2.287
? ?
metalc5 metalc ? ? N NI . NI ? ? ? 1_555 P CPH . O9 ? ? A NI 107 B CPH 106 1_555 ? ? ? ? ? ? ? 2.017
? ?
metalc6 metalc ? ? B DG 5 N7 ? ? ? 1_555 Q NI . NI ? ? B DG 15 B NI 107 1_555 ? ? ? ? ? ? ? 2.169
? ?
metalc7 metalc ? ? Q NI . NI ? ? ? 1_555 Y HOH . O ? ? B NI 107 B HOH 203 1_555 ? ? ? ? ? ? ? 2.170
? ?
metalc8 metalc ? ? C DG 5 N7 ? ? ? 1_555 S NI . NI ? ? C DG 5 C NI 107 1_555 ? ? ? ? ? ? ? 2.270
? ?
metalc9 metalc ? ? R CPH . O1 ? ? ? 1_555 U NI . NI ? ? C CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 2.554
? ?
metalc10 metalc ? ? R CPH . O9 ? ? ? 1_555 U NI . NI ? ? C CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 1.934
? ?
metalc11 metalc ? ? D DG 3 N7 ? ? ? 1_555 V NI . NI ? ? D DG 13 D NI 108 1_555 ? ? ? ? ? ? ? 2.270
? ?
metalc12 metalc ? ? T CPH . O1 ? ? ? 1_555 U NI . NI ? ? D CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 1.949
? ?
metalc13 metalc ? ? T CPH . O9 ? ? ? 1_555 U NI . NI ? ? D CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 1.875
? ?
metalc14 metalc ? ? W NI . NI ? ? ? 1_555 AA HOH . O ? ? D NI 109 D HOH 201 1_555 ? ? ? ? ? ? ? 2.654
? ?
metalc15 metalc ? ? W NI . NI ? ? ? 1_555 AA HOH . O ? ? D NI 109 D HOH 202 1_555 ? ? ? ? ? ? ? 2.579
? ?
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ?
? ?
hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ?
? ?
hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog26 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 1 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog27 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 1 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog28 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 2 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog29 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 2 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog30 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 3 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog31 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 3 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog32 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 3 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog33 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog34 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog35 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog36 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 5 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog37 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 5 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog38 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 5 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog39 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 5 N2 ? ? C DC 6 D DG 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ?
? ?
hydrog40 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 5 N1 ? ? C DC 6 D DG 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ?
? ?
hydrog41 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog42 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog43 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog44 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog45 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
hydrog46 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ?
? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
_atom_sites.entry_id 6L76
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.015452
_atom_sites.fract_transf_matrix[1][2] 0.008921
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017842
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.004056
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
NI
O
P
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT DT A . n
A 1 2 DT 2 2 2 DT DT A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 DG 5 5 5 DG DG A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DC 7 7 7 DC DC A . n
A 1 8 DG 8 8 8 DG DG A . n
A 1 9 DA 9 9 9 DA DA A . n
A 1 10 DA 10 10 10 DA DA A . n
B 2 1 DT 1 11 11 DT DT B . n
B 2 2 DT 2 12 12 DT DT B . n
B 2 3 DC 3 13 13 DC DC B . n
B 2 4 DG 4 14 14 DG DG B . n
B 2 5 DG 5 15 15 DG DG B . n
B 2 6 DC 6 16 16 DC DC B . n
B 2 7 DC 7 17 17 DC DC B . n
B 2 8 DC 8 18 18 DC DC B . n
B 2 9 DA 9 19 19 DA DA B . n
B 2 10 DA 10 20 20 DA DA B . n
C 2 1 DT 1 1 1 DT DT C . n
C 2 2 DT 2 2 2 DT DT C . n
C 2 3 DC 3 3 3 DC DC C . n
C 2 4 DG 4 4 4 DG DG C . n
C 2 5 DG 5 5 5 DG DG C . n
C 2 6 DC 6 6 6 DC DC C . n
C 2 7 DC 7 7 7 DC DC C . n
C 2 8 DC 8 8 8 DC DC C . n
C 2 9 DA 9 9 9 DA DA C . n
C 2 10 DA 10 10 ? ? ? C . n
D 1 1 DT 1 11 11 DT DT D . n
D 1 2 DT 2 12 12 DT DT D . n
D 1 3 DG 3 13 13 DG DG D . n
D 1 4 DG 4 14 14 DG DG D . n
D 1 5 DG 5 15 15 DG DG D . n
D 1 6 DC 6 16 16 DC DC D . n
D 1 7 DC 7 17 17 DC DC D . n
D 1 8 DG 8 18 18 DG DG D . n
D 1 9 DA 9 19 19 DA DA D . n
D 1 10 DA 10 20 20 DA DA D . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 CPH 1 103 23 CPH CPH A .
N 6 NI 1 107 1 NI NI A .
O 6 NI 1 108 3 NI NI A .
P 5 CPH 1 106 33 CPH CPH B .
Q 6 NI 1 107 5 NI NI B .
R 5 CPH 1 103 23 CPH CPH C .
S 6 NI 1 107 4 NI NI C .
T 5 CPH 1 103 33 CPH CPH D .
U 6 NI 1 107 2 NI NI D .
V 6 NI 1 108 6 NI NI D .
W 6 NI 1 109 7 NI NI D .
X 7 HOH 1 201 13 HOH HOH A .
X 7 HOH 2 202 42 HOH HOH A .
X 7 HOH 3 203 19 HOH HOH A .
X 7 HOH 4 204 25 HOH HOH A .
X 7 HOH 5 205 32 HOH HOH A .
X 7 HOH 6 206 49 HOH HOH A .
X 7 HOH 7 207 47 HOH HOH A .
X 7 HOH 8 208 14 HOH HOH A .
X 7 HOH 9 209 46 HOH HOH A .
X 7 HOH 10 210 37 HOH HOH A .
X 7 HOH 11 211 58 HOH HOH A .
X 7 HOH 12 212 26 HOH HOH A .
Y 7 HOH 1 201 18 HOH HOH B .
Y 7 HOH 2 202 41 HOH HOH B .
Y 7 HOH 3 203 55 HOH HOH B .
Y 7 HOH 4 204 57 HOH HOH B .
Y 7 HOH 5 205 38 HOH HOH B .
Y 7 HOH 6 206 20 HOH HOH B .
Y 7 HOH 7 207 52 HOH HOH B .
Y 7 HOH 8 208 33 HOH HOH B .
Y 7 HOH 9 209 17 HOH HOH B .
Y 7 HOH 10 210 12 HOH HOH B .
Y 7 HOH 11 211 29 HOH HOH B .
Z 7 HOH 1 201 48 HOH HOH C .
Z 7 HOH 2 202 44 HOH HOH C .
Z 7 HOH 3 203 35 HOH HOH C .
Z 7 HOH 4 204 23 HOH HOH C .
Z 7 HOH 5 205 28 HOH HOH C .
Z 7 HOH 6 206 43 HOH HOH C .
Z 7 HOH 7 207 40 HOH HOH C .
Z 7 HOH 8 208 45 HOH HOH C .
AA 7 HOH 1 201 21 HOH HOH D .
AA 7 HOH 2 202 39 HOH HOH D .
AA 7 HOH 3 203 27 HOH HOH D .
AA 7 HOH 4 204 30 HOH HOH D .
AA 7 HOH 5 205 51 HOH HOH D .
AA 7 HOH 6 206 59 HOH HOH D .
AA 7 HOH 7 207 8 HOH HOH D .
AA 7 HOH 8 208 34 HOH HOH D .
AA 7 HOH 9 209 31 HOH HOH D .
AA 7 HOH 10 210 36 HOH HOH D .
AA 7 HOH 11 211 16 HOH HOH D .
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA dimeric 2
2 author_and_software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,E,F,G,H,M,N,O,P,Q,X,Y
2 1 C,D,I,J,K,L,R,S,T,U,V,W,Z,AA
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 930 ?
1 MORE -4 ?
1 'SSA (A^2)' 3900 ?
2 'ABSA (A^2)' 770 ?
2 MORE -4 ?
2 'SSA (A^2)' 3990 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O1 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? M CPH . ? A CPH 103 ? 1_555 90.8 ?
2 O1 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O1 ? P CPH . ? B CPH 106 ? 1_555 68.0 ?
3 O9 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O1 ? P CPH . ? B CPH 106 ? 1_555 119.7 ?
4 O1 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? P CPH . ? B CPH 106 ? 1_555 71.4 ?
5 O9 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? P CPH . ? B CPH 106 ? 1_555 142.5 ?
6 O1 ? P CPH . ? B CPH 106 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? P CPH . ? B CPH 106 ? 1_555 84.7 ?
7 N7 ? B DG 5 ? B DG 15 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? Y HOH . ? B HOH 203 ? 1_555 108.7 ?
8 O1 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? R CPH . ? C CPH 103 ? 1_555 79.1 ?
9 O1 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O1 ? T CPH . ? D CPH 103 ? 1_555 62.6 ?
10 O9 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O1 ? T CPH . ? D CPH 103 ? 1_555 76.4 ?
11 O1 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? T CPH . ? D CPH 103 ? 1_555 111.8 ?
12 O9 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? T CPH . ? D CPH 103 ? 1_555 161.4 ?
13 O1 ? T CPH . ? D CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? T CPH . ? D CPH 103 ? 1_555 94.9 ?
14 O ? AA HOH . ? D HOH 201 ? 1_555 NI ? W NI . ? D NI 109 ? 1_555 O ? AA HOH . ? D HOH 202 ? 1_555 163.3 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2021-01-13
2 'Structure model' 1 1 2021-05-26
3 'Structure model' 1 2 2021-10-06
4 'Structure model' 1 3 2023-11-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' citation
4 3 'Structure model' citation_author
5 3 'Structure model' database_2
6 4 'Structure model' chem_comp_atom
7 4 'Structure model' chem_comp_bond
8 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_ASTM'
4 2 'Structure model' '_citation.journal_id_CSD'
5 2 'Structure model' '_citation.journal_id_ISSN'
6 2 'Structure model' '_citation.pdbx_database_id_DOI'
7 2 'Structure model' '_citation.pdbx_database_id_PubMed'
8 2 'Structure model' '_citation.title'
9 2 'Structure model' '_citation.year'
10 3 'Structure model' '_citation.journal_volume'
11 3 'Structure model' '_citation.page_first'
12 3 'Structure model' '_citation.page_last'
13 3 'Structure model' '_citation_author.identifier_ORCID'
14 3 'Structure model' '_database_2.pdbx_DOI'
15 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_refine_tls.id 1
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x -26.1521
_pdbx_refine_tls.origin_y 6.1794
_pdbx_refine_tls.origin_z -14.6360
_pdbx_refine_tls.T[1][1] 1.5720
_pdbx_refine_tls.T[1][1]_esd ?
_pdbx_refine_tls.T[1][2] 0.7793
_pdbx_refine_tls.T[1][2]_esd ?
_pdbx_refine_tls.T[1][3] 0.1047
_pdbx_refine_tls.T[1][3]_esd ?
_pdbx_refine_tls.T[2][2] 0.3068
_pdbx_refine_tls.T[2][2]_esd ?
_pdbx_refine_tls.T[2][3] 0.2227
_pdbx_refine_tls.T[2][3]_esd ?
_pdbx_refine_tls.T[3][3] 0.6463
_pdbx_refine_tls.T[3][3]_esd ?
_pdbx_refine_tls.L[1][1] 2.9085
_pdbx_refine_tls.L[1][1]_esd ?
_pdbx_refine_tls.L[1][2] -0.0884
_pdbx_refine_tls.L[1][2]_esd ?
_pdbx_refine_tls.L[1][3] -0.2765
_pdbx_refine_tls.L[1][3]_esd ?
_pdbx_refine_tls.L[2][2] 1.9851
_pdbx_refine_tls.L[2][2]_esd ?
_pdbx_refine_tls.L[2][3] -0.5325
_pdbx_refine_tls.L[2][3]_esd ?
_pdbx_refine_tls.L[3][3] 1.1217
_pdbx_refine_tls.L[3][3]_esd ?
_pdbx_refine_tls.S[1][1] 0.6300
_pdbx_refine_tls.S[1][1]_esd ?
_pdbx_refine_tls.S[1][2] 0.7639
_pdbx_refine_tls.S[1][2]_esd ?
_pdbx_refine_tls.S[1][3] -0.2108
_pdbx_refine_tls.S[1][3]_esd ?
_pdbx_refine_tls.S[2][1] 0.1659
_pdbx_refine_tls.S[2][1]_esd ?
_pdbx_refine_tls.S[2][2] -1.1268
_pdbx_refine_tls.S[2][2]_esd ?
_pdbx_refine_tls.S[2][3] 0.5923
_pdbx_refine_tls.S[2][3]_esd ?
_pdbx_refine_tls.S[3][1] -1.0954
_pdbx_refine_tls.S[3][1]_esd ?
_pdbx_refine_tls.S[3][2] 0.1688
_pdbx_refine_tls.S[3][2]_esd ?
_pdbx_refine_tls.S[3][3] 0.0927
_pdbx_refine_tls.S[3][3]_esd ?
#
loop_
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? A 10 ? all
2 'X-RAY DIFFRACTION' 1 ? ? B 11 ? ? B 20 ? all
3 'X-RAY DIFFRACTION' 1 ? ? E 21 ? ? E 36 ? all
4 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? C 9 ? all
5 'X-RAY DIFFRACTION' 1 ? ? D 11 ? ? D 20 ? all
6 'X-RAY DIFFRACTION' 1 ? ? F 21 ? ? F 36 ? all
7 'X-RAY DIFFRACTION' 1 ? ? G 1 ? ? G 7 ? all
8 'X-RAY DIFFRACTION' 1 ? ? H 8 ? ? H 59 ? all
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 2
? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4
#
_pdbx_entry_details.entry_id 6L76
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O1 K ARI 1 ? ? C6 D CPH 103 ? ? 1.37
2 1 O1 H ARI 1 ? ? C6 B CPH 106 ? ? 1.37
3 1 O1 I ARI 1 ? ? C6 C CPH 103 ? ? 1.38
4 1 O1 E ARI 1 ? ? C6 A CPH 103 ? ? 1.38
5 1 O1 G CDR 1 ? ? C2 A CPH 103 ? ? 1.60
6 1 O1 F CDR 1 ? ? C2 B CPH 106 ? ? 1.60
7 1 O1 L CDR 1 ? ? C2 D CPH 103 ? ? 1.60
8 1 O1 J CDR 1 ? ? C2 C CPH 103 ? ? 1.60
9 1 C2 F CDR 1 ? ? O1 F CDR 2 ? ? 2.05
10 1 C2 G CDR 1 ? ? O1 G CDR 2 ? ? 2.10
11 1 O2 A DC 7 ? ? N2 B DG 14 ? ? 2.11
12 1 C1 G CDR 1 ? ? C2 A CPH 103 ? ? 2.12
13 1 O1 I ARI 1 ? ? C5 C CPH 103 ? ? 2.14
14 1 C4 F CDR 2 ? ? O1 F ERI 3 ? ? 2.17
15 1 O2 C DC 6 ? ? N2 D DG 15 ? ? 2.18
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A DC 6 ? ? "C3'" A DC 6 ? ? 1.380 1.419 -0.039 0.006 N
2 1 "C1'" B DC 17 ? ? N1 B DC 17 ? ? 1.576 1.488 0.088 0.013 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O3'" A DG 3 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 117.50 110.50 7.00 1.10 Y
2 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.45 108.30 2.15 0.30 N
3 1 "O4'" C DC 8 ? ? "C1'" C DC 8 ? ? N1 C DC 8 ? ? 110.75 108.30 2.45 0.30 N
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? A HOH 207 ? 6.22 .
2 1 O ? A HOH 208 ? 6.45 .
3 1 O ? A HOH 209 ? 7.99 .
4 1 O ? A HOH 210 ? 8.26 .
5 1 O ? A HOH 211 ? . 8.32
6 1 O ? A HOH 212 ? 8.89 .
7 1 O ? B HOH 210 ? . 6.98
8 1 O ? B HOH 211 ? 7.67 .
9 1 O ? C HOH 208 ? . 6.27
10 1 O ? D HOH 207 ? 5.88 .
11 1 O ? D HOH 208 ? 6.00 .
12 1 O ? D HOH 209 ? 8.46 .
13 1 O ? D HOH 210 ? . 8.56
14 1 O ? D HOH 211 ? 8.71 .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 N 1 A CPH 103 ? O6 ? M CPH 1 O6
2 1 N 1 A CPH 103 ? O2 ? M CPH 1 O2
3 1 N 1 B CPH 106 ? O6 ? P CPH 1 O6
4 1 N 1 B CPH 106 ? O2 ? P CPH 1 O2
5 1 N 1 C CPH 103 ? O6 ? R CPH 1 O6
6 1 N 1 C CPH 103 ? O2 ? R CPH 1 O2
7 1 N 1 D CPH 103 ? O6 ? T CPH 1 O6
8 1 N 1 D CPH 103 ? O2 ? T CPH 1 O2
#
_pdbx_unobs_or_zero_occ_residues.id 1
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 1
_pdbx_unobs_or_zero_occ_residues.polymer_flag Y
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 1
_pdbx_unobs_or_zero_occ_residues.auth_asym_id C
_pdbx_unobs_or_zero_occ_residues.auth_comp_id DA
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 10
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_residues.label_asym_id C
_pdbx_unobs_or_zero_occ_residues.label_comp_id DA
_pdbx_unobs_or_zero_occ_residues.label_seq_id 10
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1GL O1 O N N 1
1GL C1 C N S 2
1GL C2 C N N 3
1GL C3 C N R 4
1GL O3 O N N 5
1GL C4 C N R 6
1GL O4 O N N 7
1GL CME C N N 8
1GL C5 C N R 9
1GL O5 O N N 10
1GL C6 C N N 11
1GL HO1 H N N 12
1GL H1 H N N 13
1GL H2 H N N 14
1GL H22 H N N 15
1GL H3 H N N 16
1GL HO3 H N N 17
1GL H4 H N N 18
1GL HM41 H N N 19
1GL HM42 H N N 20
1GL HM43 H N N 21
1GL H5 H N N 22
1GL H61 H N N 23
1GL H62 H N N 24
1GL H63 H N N 25
ARI O1 O N N 26
ARI C1 C N R 27
ARI C2 C N N 28
ARI C3 C N N 29
ARI C4 C N R 30
ARI O4 O N N 31
ARI CME C N N 32
ARI CO4 C N N 33
ARI OC4 O N N 34
ARI C5 C N R 35
ARI O5 O N N 36
ARI C6 C N N 37
ARI HO1 H N N 38
ARI H1 H N N 39
ARI H2 H N N 40
ARI H22 H N N 41
ARI H3 H N N 42
ARI H32 H N N 43
ARI H4 H N N 44
ARI H41 H N N 45
ARI H42 H N N 46
ARI H43 H N N 47
ARI H5 H N N 48
ARI H61 H N N 49
ARI H62 H N N 50
ARI H63 H N N 51
CDR O1 O N N 52
CDR C1 C N R 53
CDR C2 C N N 54
CDR C3 C N N 55
CDR C4 C N S 56
CDR O4 O N N 57
CDR C5 C N R 58
CDR O5 O N N 59
CDR C6 C N N 60
CDR HO1 H N N 61
CDR H1 H N N 62
CDR H2 H N N 63
CDR H22 H N N 64
CDR H3 H N N 65
CDR H32 H N N 66
CDR H4 H N N 67
CDR HO4 H N N 68
CDR H5 H N N 69
CDR H61 H N N 70
CDR H62 H N N 71
CDR H63 H N N 72
CPH C1 C N N 73
CPH O1 O N N 74
CPH C2 C N S 75
CPH C3 C N R 76
CPH C4 C N N 77
CPH C5 C Y N 78
CPH C6 C Y N 79
CPH C7 C Y N 80
CPH C8 C Y N 81
CPH O8 O N N 82
CPH C9 C Y N 83
CPH O9 O N N 84
CPH "C1'" C N S 85
CPH "O1'" O N N 86
CPH C10 C Y N 87
CPH "C2'" C N N 88
CPH "O2'" O N N 89
CPH "C3'" C N S 90
CPH "O3'" O N N 91
CPH "C4'" C N R 92
CPH "O4'" O N N 93
CPH C4A C Y N 94
CPH "C5'" C N N 95
CPH C5A C Y N 96
CPH C8A C Y N 97
CPH C9A C Y N 98
CPH CC7 C N N 99
CPH O6 O N N 100
CPH O2 O N N 101
CPH CME C N N 102
CPH H2 H N N 103
CPH H3 H N N 104
CPH H4 H N N 105
CPH H4A H N N 106
CPH H5 H N N 107
CPH HO8 H N N 108
CPH HO9 H N N 109
CPH "H1'" H N N 110
CPH H10 H N N 111
CPH "H3'" H N N 112
CPH "HO3'" H N N 113
CPH "H4'" H N N 114
CPH "HO4'" H N N 115
CPH "H5'" H N N 116
CPH "H5'A" H N N 117
CPH "H5'B" H N N 118
CPH HC7 H N N 119
CPH HC7A H N N 120
CPH HC7B H N N 121
CPH HO6 H N N 122
CPH HO2 H N N 123
CPH HME H N N 124
CPH HMEA H N N 125
CPH HMEB H N N 126
DA OP3 O N N 127
DA P P N N 128
DA OP1 O N N 129
DA OP2 O N N 130
DA "O5'" O N N 131
DA "C5'" C N N 132
DA "C4'" C N R 133
DA "O4'" O N N 134
DA "C3'" C N S 135
DA "O3'" O N N 136
DA "C2'" C N N 137
DA "C1'" C N R 138
DA N9 N Y N 139
DA C8 C Y N 140
DA N7 N Y N 141
DA C5 C Y N 142
DA C6 C Y N 143
DA N6 N N N 144
DA N1 N Y N 145
DA C2 C Y N 146
DA N3 N Y N 147
DA C4 C Y N 148
DA HOP3 H N N 149
DA HOP2 H N N 150
DA "H5'" H N N 151
DA "H5''" H N N 152
DA "H4'" H N N 153
DA "H3'" H N N 154
DA "HO3'" H N N 155
DA "H2'" H N N 156
DA "H2''" H N N 157
DA "H1'" H N N 158
DA H8 H N N 159
DA H61 H N N 160
DA H62 H N N 161
DA H2 H N N 162
DC OP3 O N N 163
DC P P N N 164
DC OP1 O N N 165
DC OP2 O N N 166
DC "O5'" O N N 167
DC "C5'" C N N 168
DC "C4'" C N R 169
DC "O4'" O N N 170
DC "C3'" C N S 171
DC "O3'" O N N 172
DC "C2'" C N N 173
DC "C1'" C N R 174
DC N1 N N N 175
DC C2 C N N 176
DC O2 O N N 177
DC N3 N N N 178
DC C4 C N N 179
DC N4 N N N 180
DC C5 C N N 181
DC C6 C N N 182
DC HOP3 H N N 183
DC HOP2 H N N 184
DC "H5'" H N N 185
DC "H5''" H N N 186
DC "H4'" H N N 187
DC "H3'" H N N 188
DC "HO3'" H N N 189
DC "H2'" H N N 190
DC "H2''" H N N 191
DC "H1'" H N N 192
DC H41 H N N 193
DC H42 H N N 194
DC H5 H N N 195
DC H6 H N N 196
DG OP3 O N N 197
DG P P N N 198
DG OP1 O N N 199
DG OP2 O N N 200
DG "O5'" O N N 201
DG "C5'" C N N 202
DG "C4'" C N R 203
DG "O4'" O N N 204
DG "C3'" C N S 205
DG "O3'" O N N 206
DG "C2'" C N N 207
DG "C1'" C N R 208
DG N9 N Y N 209
DG C8 C Y N 210
DG N7 N Y N 211
DG C5 C Y N 212
DG C6 C N N 213
DG O6 O N N 214
DG N1 N N N 215
DG C2 C N N 216
DG N2 N N N 217
DG N3 N N N 218
DG C4 C Y N 219
DG HOP3 H N N 220
DG HOP2 H N N 221
DG "H5'" H N N 222
DG "H5''" H N N 223
DG "H4'" H N N 224
DG "H3'" H N N 225
DG "HO3'" H N N 226
DG "H2'" H N N 227
DG "H2''" H N N 228
DG "H1'" H N N 229
DG H8 H N N 230
DG H1 H N N 231
DG H21 H N N 232
DG H22 H N N 233
DT OP3 O N N 234
DT P P N N 235
DT OP1 O N N 236
DT OP2 O N N 237
DT "O5'" O N N 238
DT "C5'" C N N 239
DT "C4'" C N R 240
DT "O4'" O N N 241
DT "C3'" C N S 242
DT "O3'" O N N 243
DT "C2'" C N N 244
DT "C1'" C N R 245
DT N1 N N N 246
DT C2 C N N 247
DT O2 O N N 248
DT N3 N N N 249
DT C4 C N N 250
DT O4 O N N 251
DT C5 C N N 252
DT C7 C N N 253
DT C6 C N N 254
DT HOP3 H N N 255
DT HOP2 H N N 256
DT "H5'" H N N 257
DT "H5''" H N N 258
DT "H4'" H N N 259
DT "H3'" H N N 260
DT "HO3'" H N N 261
DT "H2'" H N N 262
DT "H2''" H N N 263
DT "H1'" H N N 264
DT H3 H N N 265
DT H71 H N N 266
DT H72 H N N 267
DT H73 H N N 268
DT H6 H N N 269
ERI O1 O N N 270
ERI C1 C N R 271
ERI C2 C N N 272
ERI C3 C N S 273
ERI O3 O N N 274
ERI CC3 C N N 275
ERI C4 C N S 276
ERI O4 O N N 277
ERI CME C N N 278
ERI CO4 C N N 279
ERI OC4 O N N 280
ERI C5 C N S 281
ERI O5 O N N 282
ERI C6 C N N 283
ERI HO1 H N N 284
ERI H1 H N N 285
ERI H21 H N N 286
ERI H22 H N N 287
ERI HO3 H N N 288
ERI H31 H N N 289
ERI H32 H N N 290
ERI H33 H N N 291
ERI H4 H N N 292
ERI H41 H N N 293
ERI H42 H N N 294
ERI H43 H N N 295
ERI H5 H N N 296
ERI H61 H N N 297
ERI H62 H N N 298
ERI H63 H N N 299
HOH O O N N 300
HOH H1 H N N 301
HOH H2 H N N 302
NI NI NI N N 303
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1GL O1 C1 sing N N 1
1GL O1 HO1 sing N N 2
1GL C1 C2 sing N N 3
1GL C1 O5 sing N N 4
1GL C1 H1 sing N N 5
1GL C2 C3 sing N N 6
1GL C2 H2 sing N N 7
1GL C2 H22 sing N N 8
1GL C3 O3 sing N N 9
1GL C3 C4 sing N N 10
1GL C3 H3 sing N N 11
1GL O3 HO3 sing N N 12
1GL C4 O4 sing N N 13
1GL C4 C5 sing N N 14
1GL C4 H4 sing N N 15
1GL O4 CME sing N N 16
1GL CME HM41 sing N N 17
1GL CME HM42 sing N N 18
1GL CME HM43 sing N N 19
1GL C5 O5 sing N N 20
1GL C5 C6 sing N N 21
1GL C5 H5 sing N N 22
1GL C6 H61 sing N N 23
1GL C6 H62 sing N N 24
1GL C6 H63 sing N N 25
ARI O1 C1 sing N N 26
ARI O1 HO1 sing N N 27
ARI C1 C2 sing N N 28
ARI C1 O5 sing N N 29
ARI C1 H1 sing N N 30
ARI C2 C3 sing N N 31
ARI C2 H2 sing N N 32
ARI C2 H22 sing N N 33
ARI C3 C4 sing N N 34
ARI C3 H3 sing N N 35
ARI C3 H32 sing N N 36
ARI C4 O4 sing N N 37
ARI C4 C5 sing N N 38
ARI C4 H4 sing N N 39
ARI O4 CO4 sing N N 40
ARI CME CO4 sing N N 41
ARI CME H41 sing N N 42
ARI CME H42 sing N N 43
ARI CME H43 sing N N 44
ARI CO4 OC4 doub N N 45
ARI C5 O5 sing N N 46
ARI C5 C6 sing N N 47
ARI C5 H5 sing N N 48
ARI C6 H61 sing N N 49
ARI C6 H62 sing N N 50
ARI C6 H63 sing N N 51
CDR O1 C1 sing N N 52
CDR O1 HO1 sing N N 53
CDR C1 C2 sing N N 54
CDR C1 O5 sing N N 55
CDR C1 H1 sing N N 56
CDR C2 C3 sing N N 57
CDR C2 H2 sing N N 58
CDR C2 H22 sing N N 59
CDR C3 C4 sing N N 60
CDR C3 H3 sing N N 61
CDR C3 H32 sing N N 62
CDR C4 O4 sing N N 63
CDR C4 C5 sing N N 64
CDR C4 H4 sing N N 65
CDR O4 HO4 sing N N 66
CDR C5 O5 sing N N 67
CDR C5 C6 sing N N 68
CDR C5 H5 sing N N 69
CDR C6 H61 sing N N 70
CDR C6 H62 sing N N 71
CDR C6 H63 sing N N 72
CPH O1 C1 doub N N 73
CPH C9A C1 sing N N 74
CPH C1 C2 sing N N 75
CPH C2 O2 sing N N 76
CPH C2 C3 sing N N 77
CPH C2 H2 sing N N 78
CPH C3 C4 sing N N 79
CPH C3 "C1'" sing N N 80
CPH C3 H3 sing N N 81
CPH C4A C4 sing N N 82
CPH C4 H4 sing N N 83
CPH C4 H4A sing N N 84
CPH C6 C5 doub Y N 85
CPH C5 C5A sing Y N 86
CPH C5 H5 sing N N 87
CPH C7 C6 sing Y N 88
CPH O6 C6 sing N N 89
CPH CC7 C7 sing N N 90
CPH C7 C8 doub Y N 91
CPH O8 C8 sing N N 92
CPH C8 C8A sing Y N 93
CPH O8 HO8 sing N N 94
CPH O9 C9 sing N N 95
CPH C8A C9 doub Y N 96
CPH C9 C9A sing Y N 97
CPH O9 HO9 sing N N 98
CPH "C2'" "C1'" sing N N 99
CPH "C1'" "O1'" sing N N 100
CPH "C1'" "H1'" sing N N 101
CPH "O1'" CME sing N N 102
CPH C5A C10 doub Y N 103
CPH C10 C4A sing Y N 104
CPH C10 H10 sing N N 105
CPH "O2'" "C2'" doub N N 106
CPH "C2'" "C3'" sing N N 107
CPH "O3'" "C3'" sing N N 108
CPH "C3'" "C4'" sing N N 109
CPH "C3'" "H3'" sing N N 110
CPH "O3'" "HO3'" sing N N 111
CPH "O4'" "C4'" sing N N 112
CPH "C4'" "C5'" sing N N 113
CPH "C4'" "H4'" sing N N 114
CPH "O4'" "HO4'" sing N N 115
CPH C9A C4A doub Y N 116
CPH "C5'" "H5'" sing N N 117
CPH "C5'" "H5'A" sing N N 118
CPH "C5'" "H5'B" sing N N 119
CPH C8A C5A sing Y N 120
CPH CC7 HC7 sing N N 121
CPH CC7 HC7A sing N N 122
CPH CC7 HC7B sing N N 123
CPH O6 HO6 sing N N 124
CPH O2 HO2 sing N N 125
CPH CME HME sing N N 126
CPH CME HMEA sing N N 127
CPH CME HMEB sing N N 128
DA OP3 P sing N N 129
DA OP3 HOP3 sing N N 130
DA P OP1 doub N N 131
DA P OP2 sing N N 132
DA P "O5'" sing N N 133
DA OP2 HOP2 sing N N 134
DA "O5'" "C5'" sing N N 135
DA "C5'" "C4'" sing N N 136
DA "C5'" "H5'" sing N N 137
DA "C5'" "H5''" sing N N 138
DA "C4'" "O4'" sing N N 139
DA "C4'" "C3'" sing N N 140
DA "C4'" "H4'" sing N N 141
DA "O4'" "C1'" sing N N 142
DA "C3'" "O3'" sing N N 143
DA "C3'" "C2'" sing N N 144
DA "C3'" "H3'" sing N N 145
DA "O3'" "HO3'" sing N N 146
DA "C2'" "C1'" sing N N 147
DA "C2'" "H2'" sing N N 148
DA "C2'" "H2''" sing N N 149
DA "C1'" N9 sing N N 150
DA "C1'" "H1'" sing N N 151
DA N9 C8 sing Y N 152
DA N9 C4 sing Y N 153
DA C8 N7 doub Y N 154
DA C8 H8 sing N N 155
DA N7 C5 sing Y N 156
DA C5 C6 sing Y N 157
DA C5 C4 doub Y N 158
DA C6 N6 sing N N 159
DA C6 N1 doub Y N 160
DA N6 H61 sing N N 161
DA N6 H62 sing N N 162
DA N1 C2 sing Y N 163
DA C2 N3 doub Y N 164
DA C2 H2 sing N N 165
DA N3 C4 sing Y N 166
DC OP3 P sing N N 167
DC OP3 HOP3 sing N N 168
DC P OP1 doub N N 169
DC P OP2 sing N N 170
DC P "O5'" sing N N 171
DC OP2 HOP2 sing N N 172
DC "O5'" "C5'" sing N N 173
DC "C5'" "C4'" sing N N 174
DC "C5'" "H5'" sing N N 175
DC "C5'" "H5''" sing N N 176
DC "C4'" "O4'" sing N N 177
DC "C4'" "C3'" sing N N 178
DC "C4'" "H4'" sing N N 179
DC "O4'" "C1'" sing N N 180
DC "C3'" "O3'" sing N N 181
DC "C3'" "C2'" sing N N 182
DC "C3'" "H3'" sing N N 183
DC "O3'" "HO3'" sing N N 184
DC "C2'" "C1'" sing N N 185
DC "C2'" "H2'" sing N N 186
DC "C2'" "H2''" sing N N 187
DC "C1'" N1 sing N N 188
DC "C1'" "H1'" sing N N 189
DC N1 C2 sing N N 190
DC N1 C6 sing N N 191
DC C2 O2 doub N N 192
DC C2 N3 sing N N 193
DC N3 C4 doub N N 194
DC C4 N4 sing N N 195
DC C4 C5 sing N N 196
DC N4 H41 sing N N 197
DC N4 H42 sing N N 198
DC C5 C6 doub N N 199
DC C5 H5 sing N N 200
DC C6 H6 sing N N 201
DG OP3 P sing N N 202
DG OP3 HOP3 sing N N 203
DG P OP1 doub N N 204
DG P OP2 sing N N 205
DG P "O5'" sing N N 206
DG OP2 HOP2 sing N N 207
DG "O5'" "C5'" sing N N 208
DG "C5'" "C4'" sing N N 209
DG "C5'" "H5'" sing N N 210
DG "C5'" "H5''" sing N N 211
DG "C4'" "O4'" sing N N 212
DG "C4'" "C3'" sing N N 213
DG "C4'" "H4'" sing N N 214
DG "O4'" "C1'" sing N N 215
DG "C3'" "O3'" sing N N 216
DG "C3'" "C2'" sing N N 217
DG "C3'" "H3'" sing N N 218
DG "O3'" "HO3'" sing N N 219
DG "C2'" "C1'" sing N N 220
DG "C2'" "H2'" sing N N 221
DG "C2'" "H2''" sing N N 222
DG "C1'" N9 sing N N 223
DG "C1'" "H1'" sing N N 224
DG N9 C8 sing Y N 225
DG N9 C4 sing Y N 226
DG C8 N7 doub Y N 227
DG C8 H8 sing N N 228
DG N7 C5 sing Y N 229
DG C5 C6 sing N N 230
DG C5 C4 doub Y N 231
DG C6 O6 doub N N 232
DG C6 N1 sing N N 233
DG N1 C2 sing N N 234
DG N1 H1 sing N N 235
DG C2 N2 sing N N 236
DG C2 N3 doub N N 237
DG N2 H21 sing N N 238
DG N2 H22 sing N N 239
DG N3 C4 sing N N 240
DT OP3 P sing N N 241
DT OP3 HOP3 sing N N 242
DT P OP1 doub N N 243
DT P OP2 sing N N 244
DT P "O5'" sing N N 245
DT OP2 HOP2 sing N N 246
DT "O5'" "C5'" sing N N 247
DT "C5'" "C4'" sing N N 248
DT "C5'" "H5'" sing N N 249
DT "C5'" "H5''" sing N N 250
DT "C4'" "O4'" sing N N 251
DT "C4'" "C3'" sing N N 252
DT "C4'" "H4'" sing N N 253
DT "O4'" "C1'" sing N N 254
DT "C3'" "O3'" sing N N 255
DT "C3'" "C2'" sing N N 256
DT "C3'" "H3'" sing N N 257
DT "O3'" "HO3'" sing N N 258
DT "C2'" "C1'" sing N N 259
DT "C2'" "H2'" sing N N 260
DT "C2'" "H2''" sing N N 261
DT "C1'" N1 sing N N 262
DT "C1'" "H1'" sing N N 263
DT N1 C2 sing N N 264
DT N1 C6 sing N N 265
DT C2 O2 doub N N 266
DT C2 N3 sing N N 267
DT N3 C4 sing N N 268
DT N3 H3 sing N N 269
DT C4 O4 doub N N 270
DT C4 C5 sing N N 271
DT C5 C7 sing N N 272
DT C5 C6 doub N N 273
DT C7 H71 sing N N 274
DT C7 H72 sing N N 275
DT C7 H73 sing N N 276
DT C6 H6 sing N N 277
ERI O1 C1 sing N N 278
ERI O1 HO1 sing N N 279
ERI C1 C2 sing N N 280
ERI C1 O5 sing N N 281
ERI C1 H1 sing N N 282
ERI C2 C3 sing N N 283
ERI C2 H21 sing N N 284
ERI C2 H22 sing N N 285
ERI C3 O3 sing N N 286
ERI C3 CC3 sing N N 287
ERI C3 C4 sing N N 288
ERI O3 HO3 sing N N 289
ERI CC3 H31 sing N N 290
ERI CC3 H32 sing N N 291
ERI CC3 H33 sing N N 292
ERI C4 O4 sing N N 293
ERI C4 C5 sing N N 294
ERI C4 H4 sing N N 295
ERI O4 CO4 sing N N 296
ERI CME CO4 sing N N 297
ERI CME H41 sing N N 298
ERI CME H42 sing N N 299
ERI CME H43 sing N N 300
ERI CO4 OC4 doub N N 301
ERI C5 O5 sing N N 302
ERI C5 C6 sing N N 303
ERI C5 H5 sing N N 304
ERI C6 H61 sing N N 305
ERI C6 H62 sing N N 306
ERI C6 H63 sing N N 307
HOH O H1 sing N N 308
HOH O H2 sing N N 309
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
6L76 'double helix'
6L76 'a-form double helix'
6L76 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 B DA 10 1_555 -0.118 -0.262 0.309 2.623 -12.507 -0.182 1 A_DT1:DA20_B A 1 ? B 20 ? 20 1
1 A DT 2 1_555 B DA 9 1_555 -0.146 -0.129 0.564 0.595 -3.784 -0.195 2 A_DT2:DA19_B A 2 ? B 19 ? 20 1
1 A DG 3 1_555 B DC 8 1_555 -0.060 -0.180 0.740 15.587 6.239 -0.339 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1
1 A DG 4 1_555 B DC 7 1_555 -0.176 -0.212 0.536 7.214 -8.313 1.060 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1
1 A DG 5 1_555 B DC 6 1_555 -0.172 -0.228 0.546 -4.223 -3.699 0.807 5 A_DG5:DC16_B A 5 ? B 16 ? 19 1
1 A DC 6 1_555 B DG 5 1_555 0.161 -0.085 0.178 -7.215 -7.346 2.975 6 A_DC6:DG15_B A 6 ? B 15 ? 19 1
1 A DC 7 1_555 B DG 4 1_555 -0.044 -0.686 0.099 2.072 -7.578 1.502 7 A_DC7:DG14_B A 7 ? B 14 ? 22 1
1 A DG 8 1_555 B DC 3 1_555 -0.128 -0.209 0.250 11.620 -1.924 1.359 8 A_DG8:DC13_B A 8 ? B 13 ? 19 1
1 A DA 9 1_555 B DT 2 1_555 0.119 -0.109 -0.741 6.459 -8.208 1.354 9 A_DA9:DT12_B A 9 ? B 12 ? 20 1
1 A DA 10 1_555 B DT 1 1_555 0.600 -0.235 -0.642 -9.685 -14.542 0.657 10 A_DA10:DT11_B A 10 ? B 11 ? 20 1
1 C DT 1 1_555 D DA 10 1_555 0.037 -0.148 0.151 -3.250 -9.488 1.778 11 C_DT1:DA20_D C 1 ? D 20 ? 20 1
1 C DT 2 1_555 D DA 9 1_555 -0.145 -0.034 -0.118 0.521 -5.735 -2.469 12 C_DT2:DA19_D C 2 ? D 19 ? 20 1
1 C DC 3 1_555 D DG 8 1_555 0.224 -0.104 0.055 2.633 0.255 1.934 13 C_DC3:DG18_D C 3 ? D 18 ? 19 1
1 C DG 4 1_555 D DC 7 1_555 -0.193 -0.205 0.394 4.284 -4.563 0.628 14 C_DG4:DC17_D C 4 ? D 17 ? 19 1
1 C DG 5 1_555 D DC 6 1_555 -0.293 -0.584 0.406 0.624 -1.638 0.467 15 C_DG5:DC16_D C 5 ? D 16 ? 19 1
1 C DC 6 1_555 D DG 5 1_555 0.216 -0.754 -0.017 -0.136 -6.767 0.034 16 C_DC6:DG15_D C 6 ? D 15 ? 22 1
1 C DC 7 1_555 D DG 4 1_555 0.163 -0.180 0.209 -2.528 -1.726 1.613 17 C_DC7:DG14_D C 7 ? D 14 ? 19 1
1 C DC 8 1_555 D DG 3 1_555 0.202 -0.153 -0.221 9.957 6.442 0.661 18 C_DC8:DG13_D C 8 ? D 13 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 B DA 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.024 -0.594 3.211 0.785 9.423 34.362 -2.288 0.149 2.950 15.588 -1.298
35.602 1 AA_DT1DT2:DA19DA20_BB A 1 ? B 20 ? A 2 ? B 19 ?
1 A DT 2 1_555 B DA 9 1_555 A DG 3 1_555 B DC 8 1_555 0.467 -0.701 2.748 -3.578 2.560 33.725 -1.536 -1.269 2.627 4.389 6.136
34.002 2 AA_DT2DG3:DC18DA19_BB A 2 ? B 19 ? A 3 ? B 18 ?
1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.155 -0.623 3.389 0.021 3.600 44.343 -1.165 -0.203 3.331 4.760 -0.027
44.482 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ?
1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 1.503 -2.611 3.502 1.885 2.401 20.731 -8.247 -3.296 3.303 6.626 -5.201
20.952 4 AA_DG4DG5:DC16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ?
1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 0.224 -2.259 3.201 2.661 -1.380 33.872 -3.644 0.039 3.295 -2.363 -4.557
34.000 5 AA_DG5DC6:DG15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ?
1 A DC 6 1_555 B DG 5 1_555 A DC 7 1_555 B DG 4 1_555 -1.504 -1.934 3.087 -2.391 2.672 22.882 -5.684 2.972 2.984 6.683 5.980
23.158 6 AA_DC6DC7:DG14DG15_BB A 6 ? B 15 ? A 7 ? B 14 ?
1 A DC 7 1_555 B DG 4 1_555 A DG 8 1_555 B DC 3 1_555 0.379 -0.690 2.912 5.833 6.038 31.238 -2.183 0.230 2.758 10.967
-10.594 32.320 7 AA_DC7DG8:DC13DG14_BB A 7 ? B 14 ? A 8 ? B 13 ?
1 A DG 8 1_555 B DC 3 1_555 A DA 9 1_555 B DT 2 1_555 0.023 -0.141 3.374 9.586 16.006 32.306 -2.420 1.280 2.891 26.218
-15.701 37.182 8 AA_DG8DA9:DT12DC13_BB A 8 ? B 13 ? A 9 ? B 12 ?
1 A DA 9 1_555 B DT 2 1_555 A DA 10 1_555 B DT 1 1_555 0.494 -0.108 3.866 0.036 0.015 37.353 -0.171 -0.765 3.866 0.024 -0.057
37.353 9 AA_DA9DA10:DT11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ?
1 C DT 1 1_555 D DA 10 1_555 C DT 2 1_555 D DA 9 1_555 -0.234 0.143 3.031 0.019 1.426 36.517 0.045 0.375 3.034 2.275 -0.030
36.544 10 CC_DT1DT2:DA19DA20_DD C 1 ? D 20 ? C 2 ? D 19 ?
1 C DT 2 1_555 D DA 9 1_555 C DC 3 1_555 D DG 8 1_555 0.701 -0.610 3.264 -3.777 4.540 36.127 -1.582 -1.625 3.080 7.261 6.041
36.590 11 CC_DT2DC3:DG18DA19_DD C 2 ? D 19 ? C 3 ? D 18 ?
1 C DC 3 1_555 D DG 8 1_555 C DG 4 1_555 D DC 7 1_555 0.014 -0.416 3.199 -4.929 0.523 39.127 -0.677 -0.589 3.169 0.776 7.323
39.427 12 CC_DC3DG4:DC17DG18_DD C 3 ? D 18 ? C 4 ? D 17 ?
1 C DG 4 1_555 D DC 7 1_555 C DG 5 1_555 D DC 6 1_555 1.391 -2.593 3.228 0.810 4.985 18.834 -9.846 -3.754 2.520 14.889 -2.419
19.494 13 CC_DG4DG5:DC16DC17_DD C 4 ? D 17 ? C 5 ? D 16 ?
1 C DG 5 1_555 D DC 6 1_555 C DC 6 1_555 D DG 5 1_555 -0.359 -2.197 3.228 2.239 -1.910 35.396 -3.322 0.916 3.310 -3.134 -3.675
35.514 14 CC_DG5DC6:DG15DC16_DD C 5 ? D 16 ? C 6 ? D 15 ?
1 C DC 6 1_555 D DG 5 1_555 C DC 7 1_555 D DG 4 1_555 -1.294 -2.579 3.270 -5.616 2.287 21.620 -7.481 1.229 3.211 5.948 14.605
22.444 15 CC_DC6DC7:DG14DG15_DD C 6 ? D 15 ? C 7 ? D 14 ?
1 C DC 7 1_555 D DG 4 1_555 C DC 8 1_555 D DG 3 1_555 -0.366 -0.922 3.026 1.728 4.208 37.115 -1.941 0.777 2.889 6.580 -2.702
37.383 16 CC_DC7DC8:DG13DG14_DD C 7 ? D 14 ? C 8 ? D 13 ?
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
E 3 ARI 1 E ARI 1 E ARI 22 n
E 3 1GL 2 E 1GL 2 E 1GL 21 n
F 4 CDR 1 F CDR 1 E CDR 34 n
F 4 CDR 2 F CDR 2 E CDR 35 n
F 4 ERI 3 F ERI 3 E ERI 36 n
G 4 CDR 1 G CDR 1 E CDR 24 n
G 4 CDR 2 G CDR 2 E CDR 25 n
G 4 ERI 3 G ERI 3 E ERI 26 n
H 3 ARI 1 H ARI 1 E ARI 32 n
H 3 1GL 2 H 1GL 2 E 1GL 31 n
I 3 ARI 1 I ARI 1 F ARI 22 n
I 3 1GL 2 I 1GL 2 F 1GL 21 n
J 4 CDR 1 J CDR 1 F CDR 24 n
J 4 CDR 2 J CDR 2 F CDR 25 n
J 4 ERI 3 J ERI 3 F ERI 26 n
K 3 ARI 1 K ARI 1 F ARI 32 n
K 3 1GL 2 K 1GL 2 F 1GL 31 n
L 4 CDR 1 L CDR 1 F CDR 34 n
L 4 CDR 2 L CDR 2 F CDR 35 n
L 4 ERI 3 L ERI 3 F ERI 36 n
#
_pdbx_chem_comp_identifier.comp_id 1GL
_pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL'
_pdbx_chem_comp_identifier.program PDB-CARE
_pdbx_chem_comp_identifier.program_version 1.0
_pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide
4 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0
2 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ?
3 4 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0
4 4 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 3 1 ARI C3 H3 2 1GL O1 HO1 sing ?
2 4 1 CDR C3 H3 2 CDR O1 HO1 sing ?
3 4 2 CDR C3 H3 3 ERI O1 HO1 sing ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
3 ARI 1 n
3 1GL 2 n
4 CDR 1 n
4 CDR 2 n
4 ERI 3 n
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
5 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH
6 'NICKEL (II) ION' NI
7 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1VAQ
_pdbx_initial_refinement_model.details ?
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#