data_6L76 # _entry.id 6L76 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6L76 pdb_00006l76 10.2210/pdb6l76/pdb WWPDB D_1300014309 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6L76 _pdbx_database_status.recvd_initial_deposition_date 2019-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, M.H.' 1 ? 'Jhan, C.R.' 2 ? 'Satange, R.B.' 3 ? 'Lin, S.M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 49 _citation.language ? _citation.page_first 9526 _citation.page_last 9538 _citation.title ;Targeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkab227 _citation.pdbx_database_id_PubMed 33836081 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jhan, C.R.' 1 ? primary 'Satange, R.' 2 ? primary 'Wang, S.C.' 3 ? primary 'Zeng, J.Y.' 4 ? primary 'Horng, Y.C.' 5 ? primary 'Jin, P.' 6 0000-0001-6137-6659 primary 'Neidle, S.' 7 0000-0003-0622-6548 primary 'Hou, M.H.' 8 0000-0003-4170-1527 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6L76 _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.718 _cell.length_a_esd ? _cell.length_b 64.718 _cell.length_b_esd ? _cell.length_c 246.578 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6L76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*GP*GP*GP*CP*CP*GP*AP*A)-3') ; 3085.028 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*CP*GP*GP*CP*CP*CP*AP*A)-3') ; 3004.980 2 ? ? ? ? 3 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 4 ? ? ? ? 4 branched man ;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol ; 432.506 4 ? ? ? ? 5 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 4 ? ? ? ? 6 non-polymer syn 'NICKEL (II) ION' 58.693 7 ? ? ? ? 7 water nat water 18.015 42 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DG)(DC)(DC)(DG)(DA)(DA)' TTGGGCCGAA A,D ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DG)(DG)(DC)(DC)(DC)(DA)(DA)' TTCGGCCCAA B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DA n 1 10 DA n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DG n 2 5 DG n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DA n 2 10 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'synthetic construct' ? 32630 ? 2 1 sample 1 10 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6L76 6L76 ? 1 ? 1 2 PDB 6L76 6L76 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6L76 A 1 ? 10 ? 6L76 1 ? 10 ? 1 10 2 2 6L76 B 1 ? 10 ? 6L76 11 ? 20 ? 11 20 3 2 6L76 C 1 ? 10 ? 6L76 1 ? 10 ? 1 10 4 1 6L76 D 1 ? 10 ? 6L76 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194 CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6L76 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 6.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 79.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1mM TTGGGCCGAA, 1 mM TTCGGCCCAA, 3 mM Chromomycin A3, 6 mM NiSO4, 2.5 mM Spermine,40 mM Sodium cacodylate (pH=7), 4 % PEG 400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99984 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99984 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate 74.540 _reflns.entry_id 6L76 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.940 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12146 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.300 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.909 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.071 _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.940 3.040 ? ? ? ? ? ? 669 100.000 ? ? ? ? 0.509 ? ? ? ? ? ? ? ? 10.400 ? 0.689 ? ? 0.535 0.162 ? 1 1 0.936 ? ? 3.040 3.170 ? ? ? ? ? ? 684 100.000 ? ? ? ? 0.235 ? ? ? ? ? ? ? ? 10.200 ? 0.805 ? ? 0.248 0.076 ? 2 1 0.989 ? ? 3.170 3.310 ? ? ? ? ? ? 698 100.000 ? ? ? ? 0.151 ? ? ? ? ? ? ? ? 9.900 ? 0.931 ? ? 0.159 0.050 ? 3 1 0.995 ? ? 3.310 3.490 ? ? ? ? ? ? 698 100.000 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 9.800 ? 0.950 ? ? 0.133 0.042 ? 4 1 0.996 ? ? 3.490 3.700 ? ? ? ? ? ? 695 100.000 ? ? ? ? 0.117 ? ? ? ? ? ? ? ? 9.600 ? 1.066 ? ? 0.124 0.040 ? 5 1 0.994 ? ? 3.700 3.990 ? ? ? ? ? ? 712 100.000 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? 9.500 ? 1.074 ? ? 0.097 0.031 ? 6 1 0.997 ? ? 3.990 4.390 ? ? ? ? ? ? 707 99.600 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? 9.000 ? 1.058 ? ? 0.070 0.023 ? 7 1 0.998 ? ? 4.390 5.020 ? ? ? ? ? ? 722 99.000 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 8.500 ? 1.066 ? ? 0.064 0.022 ? 8 1 0.996 ? ? 5.020 6.320 ? ? ? ? ? ? 730 96.800 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 8.500 ? 0.870 ? ? 0.050 0.017 ? 9 1 0.998 ? ? 6.320 30.000 ? ? ? ? ? ? 776 91.900 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 7.800 ? 0.576 ? ? 0.035 0.012 ? 10 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 214.510 _refine.B_iso_mean 93.8655 _refine.B_iso_min 61.480 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6L76 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9400 _refine.ls_d_res_low 25.5110 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12146 _refine.ls_number_reflns_R_free 1248 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0500 _refine.ls_percent_reflns_R_free 10.2700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2389 _refine.ls_R_factor_R_free 0.2762 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2346 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1VAQ _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.8700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.9400 _refine_hist.d_res_low 25.5110 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1178 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 39 _refine_hist.pdbx_B_iso_mean_ligand 88.46 _refine_hist.pdbx_B_iso_mean_solvent 110.04 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 787 _refine_hist.pdbx_number_atoms_ligand 339 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 ? 1264 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.380 ? 1843 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.578 ? 236 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 59 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 29.415 ? 418 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.94 3.0574 . . 136 1207 99.0000 . . . 0.3086 0.0000 0.2875 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0574 3.1963 . . 138 1219 100.0000 . . . 0.2651 0.0000 0.2232 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1963 3.3645 . . 137 1222 100.0000 . . . 0.2844 0.0000 0.1966 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3645 3.5748 . . 142 1232 100.0000 . . . 0.2299 0.0000 0.2091 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5748 3.8499 . . 138 1214 100.0000 . . . 0.2799 0.0000 0.2234 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8499 4.2358 . . 141 1220 100.0000 . . . 0.2473 0.0000 0.2175 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2358 4.8451 . . 142 1213 100.0000 . . . 0.2493 0.0000 0.2071 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.8451 6.0905 . . 140 1190 98.0000 . . . 0.2852 0.0000 0.2309 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.0905 25.51 . . 134 1181 95.0000 . . . 0.3213 0.0000 0.2894 . . . . . . . . . . . # _struct.entry_id 6L76 _struct.title 'Crystal structure of the Ni(II)(Chro)2-d(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 angstrom resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6L76 _struct_keywords.text 'Duplex DNA, GGGGCC motif, nucleotide flipping-out, Hoogsteen base pair, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 3 ? L N N 4 ? M N N 5 ? N N N 6 ? O N N 6 ? P N N 5 ? Q N N 6 ? R N N 5 ? S N N 6 ? T N N 5 ? U N N 6 ? V N N 6 ? W N N 6 ? X N N 7 ? Y N N 7 ? Z N N 7 ? AA N N 7 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale2 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale3 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale4 covale one ? G CDR . C3 ? ? ? 1_555 G CDR . O1 ? ? G CDR 1 G CDR 2 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale5 covale one ? G CDR . C3 ? ? ? 1_555 G ERI . O1 ? ? G CDR 2 G ERI 3 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale6 covale one ? H ARI . C3 ? ? ? 1_555 H 1GL . O1 ? ? H ARI 1 H 1GL 2 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale7 covale one ? I ARI . C3 ? ? ? 1_555 I 1GL . O1 ? ? I ARI 1 I 1GL 2 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale8 covale one ? J CDR . C3 ? ? ? 1_555 J CDR . O1 ? ? J CDR 1 J CDR 2 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale9 covale one ? J CDR . C3 ? ? ? 1_555 J ERI . O1 ? ? J CDR 2 J ERI 3 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale10 covale one ? K ARI . C3 ? ? ? 1_555 K 1GL . O1 ? ? K ARI 1 K 1GL 2 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale11 covale one ? L CDR . C3 ? ? ? 1_555 L CDR . O1 ? ? L CDR 1 L CDR 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale12 covale one ? L CDR . C3 ? ? ? 1_555 L ERI . O1 ? ? L CDR 2 L ERI 3 1_555 ? ? ? ? ? ? ? 1.374 ? ? metalc1 metalc ? ? A DG 5 N7 ? ? ? 1_555 O NI . NI ? ? A DG 5 A NI 108 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc2 metalc ? ? M CPH . O1 ? ? ? 1_555 N NI . NI ? ? A CPH 103 A NI 107 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc3 metalc ? ? M CPH . O9 ? ? ? 1_555 N NI . NI ? ? A CPH 103 A NI 107 1_555 ? ? ? ? ? ? ? 1.763 ? ? metalc4 metalc ? ? N NI . NI ? ? ? 1_555 P CPH . O1 ? ? A NI 107 B CPH 106 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc5 metalc ? ? N NI . NI ? ? ? 1_555 P CPH . O9 ? ? A NI 107 B CPH 106 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc6 metalc ? ? B DG 5 N7 ? ? ? 1_555 Q NI . NI ? ? B DG 15 B NI 107 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc7 metalc ? ? Q NI . NI ? ? ? 1_555 Y HOH . O ? ? B NI 107 B HOH 203 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc8 metalc ? ? C DG 5 N7 ? ? ? 1_555 S NI . NI ? ? C DG 5 C NI 107 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc9 metalc ? ? R CPH . O1 ? ? ? 1_555 U NI . NI ? ? C CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 2.554 ? ? metalc10 metalc ? ? R CPH . O9 ? ? ? 1_555 U NI . NI ? ? C CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 1.934 ? ? metalc11 metalc ? ? D DG 3 N7 ? ? ? 1_555 V NI . NI ? ? D DG 13 D NI 108 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc12 metalc ? ? T CPH . O1 ? ? ? 1_555 U NI . NI ? ? D CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 1.949 ? ? metalc13 metalc ? ? T CPH . O9 ? ? ? 1_555 U NI . NI ? ? D CPH 103 D NI 107 1_555 ? ? ? ? ? ? ? 1.875 ? ? metalc14 metalc ? ? W NI . NI ? ? ? 1_555 AA HOH . O ? ? D NI 109 D HOH 201 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc15 metalc ? ? W NI . NI ? ? ? 1_555 AA HOH . O ? ? D NI 109 D HOH 202 1_555 ? ? ? ? ? ? ? 2.579 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 10 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 1 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 1 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 1 D DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 2 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 2 D DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 8 N1 ? ? C DC 3 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 8 O6 ? ? C DC 3 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 8 N2 ? ? C DC 3 D DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 5 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 5 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 5 D DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 5 N2 ? ? C DC 6 D DG 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog40 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 5 N1 ? ? C DC 6 D DG 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog41 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 8 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 6L76 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015452 _atom_sites.fract_transf_matrix[1][2] 0.008921 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017842 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004056 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N NI O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n B 2 1 DT 1 11 11 DT DT B . n B 2 2 DT 2 12 12 DT DT B . n B 2 3 DC 3 13 13 DC DC B . n B 2 4 DG 4 14 14 DG DG B . n B 2 5 DG 5 15 15 DG DG B . n B 2 6 DC 6 16 16 DC DC B . n B 2 7 DC 7 17 17 DC DC B . n B 2 8 DC 8 18 18 DC DC B . n B 2 9 DA 9 19 19 DA DA B . n B 2 10 DA 10 20 20 DA DA B . n C 2 1 DT 1 1 1 DT DT C . n C 2 2 DT 2 2 2 DT DT C . n C 2 3 DC 3 3 3 DC DC C . n C 2 4 DG 4 4 4 DG DG C . n C 2 5 DG 5 5 5 DG DG C . n C 2 6 DC 6 6 6 DC DC C . n C 2 7 DC 7 7 7 DC DC C . n C 2 8 DC 8 8 8 DC DC C . n C 2 9 DA 9 9 9 DA DA C . n C 2 10 DA 10 10 ? ? ? C . n D 1 1 DT 1 11 11 DT DT D . n D 1 2 DT 2 12 12 DT DT D . n D 1 3 DG 3 13 13 DG DG D . n D 1 4 DG 4 14 14 DG DG D . n D 1 5 DG 5 15 15 DG DG D . n D 1 6 DC 6 16 16 DC DC D . n D 1 7 DC 7 17 17 DC DC D . n D 1 8 DG 8 18 18 DG DG D . n D 1 9 DA 9 19 19 DA DA D . n D 1 10 DA 10 20 20 DA DA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 CPH 1 103 23 CPH CPH A . N 6 NI 1 107 1 NI NI A . O 6 NI 1 108 3 NI NI A . P 5 CPH 1 106 33 CPH CPH B . Q 6 NI 1 107 5 NI NI B . R 5 CPH 1 103 23 CPH CPH C . S 6 NI 1 107 4 NI NI C . T 5 CPH 1 103 33 CPH CPH D . U 6 NI 1 107 2 NI NI D . V 6 NI 1 108 6 NI NI D . W 6 NI 1 109 7 NI NI D . X 7 HOH 1 201 13 HOH HOH A . X 7 HOH 2 202 42 HOH HOH A . X 7 HOH 3 203 19 HOH HOH A . X 7 HOH 4 204 25 HOH HOH A . X 7 HOH 5 205 32 HOH HOH A . X 7 HOH 6 206 49 HOH HOH A . X 7 HOH 7 207 47 HOH HOH A . X 7 HOH 8 208 14 HOH HOH A . X 7 HOH 9 209 46 HOH HOH A . X 7 HOH 10 210 37 HOH HOH A . X 7 HOH 11 211 58 HOH HOH A . X 7 HOH 12 212 26 HOH HOH A . Y 7 HOH 1 201 18 HOH HOH B . Y 7 HOH 2 202 41 HOH HOH B . Y 7 HOH 3 203 55 HOH HOH B . Y 7 HOH 4 204 57 HOH HOH B . Y 7 HOH 5 205 38 HOH HOH B . Y 7 HOH 6 206 20 HOH HOH B . Y 7 HOH 7 207 52 HOH HOH B . Y 7 HOH 8 208 33 HOH HOH B . Y 7 HOH 9 209 17 HOH HOH B . Y 7 HOH 10 210 12 HOH HOH B . Y 7 HOH 11 211 29 HOH HOH B . Z 7 HOH 1 201 48 HOH HOH C . Z 7 HOH 2 202 44 HOH HOH C . Z 7 HOH 3 203 35 HOH HOH C . Z 7 HOH 4 204 23 HOH HOH C . Z 7 HOH 5 205 28 HOH HOH C . Z 7 HOH 6 206 43 HOH HOH C . Z 7 HOH 7 207 40 HOH HOH C . Z 7 HOH 8 208 45 HOH HOH C . AA 7 HOH 1 201 21 HOH HOH D . AA 7 HOH 2 202 39 HOH HOH D . AA 7 HOH 3 203 27 HOH HOH D . AA 7 HOH 4 204 30 HOH HOH D . AA 7 HOH 5 205 51 HOH HOH D . AA 7 HOH 6 206 59 HOH HOH D . AA 7 HOH 7 207 8 HOH HOH D . AA 7 HOH 8 208 34 HOH HOH D . AA 7 HOH 9 209 31 HOH HOH D . AA 7 HOH 10 210 36 HOH HOH D . AA 7 HOH 11 211 16 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,M,N,O,P,Q,X,Y 2 1 C,D,I,J,K,L,R,S,T,U,V,W,Z,AA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 930 ? 1 MORE -4 ? 1 'SSA (A^2)' 3900 ? 2 'ABSA (A^2)' 770 ? 2 MORE -4 ? 2 'SSA (A^2)' 3990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? M CPH . ? A CPH 103 ? 1_555 90.8 ? 2 O1 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O1 ? P CPH . ? B CPH 106 ? 1_555 68.0 ? 3 O9 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O1 ? P CPH . ? B CPH 106 ? 1_555 119.7 ? 4 O1 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? P CPH . ? B CPH 106 ? 1_555 71.4 ? 5 O9 ? M CPH . ? A CPH 103 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? P CPH . ? B CPH 106 ? 1_555 142.5 ? 6 O1 ? P CPH . ? B CPH 106 ? 1_555 NI ? N NI . ? A NI 107 ? 1_555 O9 ? P CPH . ? B CPH 106 ? 1_555 84.7 ? 7 N7 ? B DG 5 ? B DG 15 ? 1_555 NI ? Q NI . ? B NI 107 ? 1_555 O ? Y HOH . ? B HOH 203 ? 1_555 108.7 ? 8 O1 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? R CPH . ? C CPH 103 ? 1_555 79.1 ? 9 O1 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O1 ? T CPH . ? D CPH 103 ? 1_555 62.6 ? 10 O9 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O1 ? T CPH . ? D CPH 103 ? 1_555 76.4 ? 11 O1 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? T CPH . ? D CPH 103 ? 1_555 111.8 ? 12 O9 ? R CPH . ? C CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? T CPH . ? D CPH 103 ? 1_555 161.4 ? 13 O1 ? T CPH . ? D CPH 103 ? 1_555 NI ? U NI . ? D NI 107 ? 1_555 O9 ? T CPH . ? D CPH 103 ? 1_555 94.9 ? 14 O ? AA HOH . ? D HOH 201 ? 1_555 NI ? W NI . ? D NI 109 ? 1_555 O ? AA HOH . ? D HOH 202 ? 1_555 163.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-13 2 'Structure model' 1 1 2021-05-26 3 'Structure model' 1 2 2021-10-06 4 'Structure model' 1 3 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 3 'Structure model' database_2 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 3 'Structure model' '_database_2.pdbx_DOI' 15 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -26.1521 _pdbx_refine_tls.origin_y 6.1794 _pdbx_refine_tls.origin_z -14.6360 _pdbx_refine_tls.T[1][1] 1.5720 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.7793 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.1047 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3068 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.2227 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.6463 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.9085 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.0884 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.2765 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.9851 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.5325 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.1217 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.6300 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.7639 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.2108 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.1659 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -1.1268 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.5923 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -1.0954 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.1688 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0927 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? A 10 ? all 2 'X-RAY DIFFRACTION' 1 ? ? B 11 ? ? B 20 ? all 3 'X-RAY DIFFRACTION' 1 ? ? E 21 ? ? E 36 ? all 4 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? C 9 ? all 5 'X-RAY DIFFRACTION' 1 ? ? D 11 ? ? D 20 ? all 6 'X-RAY DIFFRACTION' 1 ? ? F 21 ? ? F 36 ? all 7 'X-RAY DIFFRACTION' 1 ? ? G 1 ? ? G 7 ? all 8 'X-RAY DIFFRACTION' 1 ? ? H 8 ? ? H 59 ? all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 # _pdbx_entry_details.entry_id 6L76 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 K ARI 1 ? ? C6 D CPH 103 ? ? 1.37 2 1 O1 H ARI 1 ? ? C6 B CPH 106 ? ? 1.37 3 1 O1 I ARI 1 ? ? C6 C CPH 103 ? ? 1.38 4 1 O1 E ARI 1 ? ? C6 A CPH 103 ? ? 1.38 5 1 O1 G CDR 1 ? ? C2 A CPH 103 ? ? 1.60 6 1 O1 F CDR 1 ? ? C2 B CPH 106 ? ? 1.60 7 1 O1 L CDR 1 ? ? C2 D CPH 103 ? ? 1.60 8 1 O1 J CDR 1 ? ? C2 C CPH 103 ? ? 1.60 9 1 C2 F CDR 1 ? ? O1 F CDR 2 ? ? 2.05 10 1 C2 G CDR 1 ? ? O1 G CDR 2 ? ? 2.10 11 1 O2 A DC 7 ? ? N2 B DG 14 ? ? 2.11 12 1 C1 G CDR 1 ? ? C2 A CPH 103 ? ? 2.12 13 1 O1 I ARI 1 ? ? C5 C CPH 103 ? ? 2.14 14 1 C4 F CDR 2 ? ? O1 F ERI 3 ? ? 2.17 15 1 O2 C DC 6 ? ? N2 D DG 15 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 6 ? ? "C3'" A DC 6 ? ? 1.380 1.419 -0.039 0.006 N 2 1 "C1'" B DC 17 ? ? N1 B DC 17 ? ? 1.576 1.488 0.088 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A DG 3 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 117.50 110.50 7.00 1.10 Y 2 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.45 108.30 2.15 0.30 N 3 1 "O4'" C DC 8 ? ? "C1'" C DC 8 ? ? N1 C DC 8 ? ? 110.75 108.30 2.45 0.30 N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 207 ? 6.22 . 2 1 O ? A HOH 208 ? 6.45 . 3 1 O ? A HOH 209 ? 7.99 . 4 1 O ? A HOH 210 ? 8.26 . 5 1 O ? A HOH 211 ? . 8.32 6 1 O ? A HOH 212 ? 8.89 . 7 1 O ? B HOH 210 ? . 6.98 8 1 O ? B HOH 211 ? 7.67 . 9 1 O ? C HOH 208 ? . 6.27 10 1 O ? D HOH 207 ? 5.88 . 11 1 O ? D HOH 208 ? 6.00 . 12 1 O ? D HOH 209 ? 8.46 . 13 1 O ? D HOH 210 ? . 8.56 14 1 O ? D HOH 211 ? 8.71 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A CPH 103 ? O6 ? M CPH 1 O6 2 1 N 1 A CPH 103 ? O2 ? M CPH 1 O2 3 1 N 1 B CPH 106 ? O6 ? P CPH 1 O6 4 1 N 1 B CPH 106 ? O2 ? P CPH 1 O2 5 1 N 1 C CPH 103 ? O6 ? R CPH 1 O6 6 1 N 1 C CPH 103 ? O2 ? R CPH 1 O2 7 1 N 1 D CPH 103 ? O6 ? T CPH 1 O6 8 1 N 1 D CPH 103 ? O2 ? T CPH 1 O2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id C _pdbx_unobs_or_zero_occ_residues.auth_comp_id DA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 10 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id C _pdbx_unobs_or_zero_occ_residues.label_comp_id DA _pdbx_unobs_or_zero_occ_residues.label_seq_id 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1GL O1 O N N 1 1GL C1 C N S 2 1GL C2 C N N 3 1GL C3 C N R 4 1GL O3 O N N 5 1GL C4 C N R 6 1GL O4 O N N 7 1GL CME C N N 8 1GL C5 C N R 9 1GL O5 O N N 10 1GL C6 C N N 11 1GL HO1 H N N 12 1GL H1 H N N 13 1GL H2 H N N 14 1GL H22 H N N 15 1GL H3 H N N 16 1GL HO3 H N N 17 1GL H4 H N N 18 1GL HM41 H N N 19 1GL HM42 H N N 20 1GL HM43 H N N 21 1GL H5 H N N 22 1GL H61 H N N 23 1GL H62 H N N 24 1GL H63 H N N 25 ARI O1 O N N 26 ARI C1 C N R 27 ARI C2 C N N 28 ARI C3 C N N 29 ARI C4 C N R 30 ARI O4 O N N 31 ARI CME C N N 32 ARI CO4 C N N 33 ARI OC4 O N N 34 ARI C5 C N R 35 ARI O5 O N N 36 ARI C6 C N N 37 ARI HO1 H N N 38 ARI H1 H N N 39 ARI H2 H N N 40 ARI H22 H N N 41 ARI H3 H N N 42 ARI H32 H N N 43 ARI H4 H N N 44 ARI H41 H N N 45 ARI H42 H N N 46 ARI H43 H N N 47 ARI H5 H N N 48 ARI H61 H N N 49 ARI H62 H N N 50 ARI H63 H N N 51 CDR O1 O N N 52 CDR C1 C N R 53 CDR C2 C N N 54 CDR C3 C N N 55 CDR C4 C N S 56 CDR O4 O N N 57 CDR C5 C N R 58 CDR O5 O N N 59 CDR C6 C N N 60 CDR HO1 H N N 61 CDR H1 H N N 62 CDR H2 H N N 63 CDR H22 H N N 64 CDR H3 H N N 65 CDR H32 H N N 66 CDR H4 H N N 67 CDR HO4 H N N 68 CDR H5 H N N 69 CDR H61 H N N 70 CDR H62 H N N 71 CDR H63 H N N 72 CPH C1 C N N 73 CPH O1 O N N 74 CPH C2 C N S 75 CPH C3 C N R 76 CPH C4 C N N 77 CPH C5 C Y N 78 CPH C6 C Y N 79 CPH C7 C Y N 80 CPH C8 C Y N 81 CPH O8 O N N 82 CPH C9 C Y N 83 CPH O9 O N N 84 CPH "C1'" C N S 85 CPH "O1'" O N N 86 CPH C10 C Y N 87 CPH "C2'" C N N 88 CPH "O2'" O N N 89 CPH "C3'" C N S 90 CPH "O3'" O N N 91 CPH "C4'" C N R 92 CPH "O4'" O N N 93 CPH C4A C Y N 94 CPH "C5'" C N N 95 CPH C5A C Y N 96 CPH C8A C Y N 97 CPH C9A C Y N 98 CPH CC7 C N N 99 CPH O6 O N N 100 CPH O2 O N N 101 CPH CME C N N 102 CPH H2 H N N 103 CPH H3 H N N 104 CPH H4 H N N 105 CPH H4A H N N 106 CPH H5 H N N 107 CPH HO8 H N N 108 CPH HO9 H N N 109 CPH "H1'" H N N 110 CPH H10 H N N 111 CPH "H3'" H N N 112 CPH "HO3'" H N N 113 CPH "H4'" H N N 114 CPH "HO4'" H N N 115 CPH "H5'" H N N 116 CPH "H5'A" H N N 117 CPH "H5'B" H N N 118 CPH HC7 H N N 119 CPH HC7A H N N 120 CPH HC7B H N N 121 CPH HO6 H N N 122 CPH HO2 H N N 123 CPH HME H N N 124 CPH HMEA H N N 125 CPH HMEB H N N 126 DA OP3 O N N 127 DA P P N N 128 DA OP1 O N N 129 DA OP2 O N N 130 DA "O5'" O N N 131 DA "C5'" C N N 132 DA "C4'" C N R 133 DA "O4'" O N N 134 DA "C3'" C N S 135 DA "O3'" O N N 136 DA "C2'" C N N 137 DA "C1'" C N R 138 DA N9 N Y N 139 DA C8 C Y N 140 DA N7 N Y N 141 DA C5 C Y N 142 DA C6 C Y N 143 DA N6 N N N 144 DA N1 N Y N 145 DA C2 C Y N 146 DA N3 N Y N 147 DA C4 C Y N 148 DA HOP3 H N N 149 DA HOP2 H N N 150 DA "H5'" H N N 151 DA "H5''" H N N 152 DA "H4'" H N N 153 DA "H3'" H N N 154 DA "HO3'" H N N 155 DA "H2'" H N N 156 DA "H2''" H N N 157 DA "H1'" H N N 158 DA H8 H N N 159 DA H61 H N N 160 DA H62 H N N 161 DA H2 H N N 162 DC OP3 O N N 163 DC P P N N 164 DC OP1 O N N 165 DC OP2 O N N 166 DC "O5'" O N N 167 DC "C5'" C N N 168 DC "C4'" C N R 169 DC "O4'" O N N 170 DC "C3'" C N S 171 DC "O3'" O N N 172 DC "C2'" C N N 173 DC "C1'" C N R 174 DC N1 N N N 175 DC C2 C N N 176 DC O2 O N N 177 DC N3 N N N 178 DC C4 C N N 179 DC N4 N N N 180 DC C5 C N N 181 DC C6 C N N 182 DC HOP3 H N N 183 DC HOP2 H N N 184 DC "H5'" H N N 185 DC "H5''" H N N 186 DC "H4'" H N N 187 DC "H3'" H N N 188 DC "HO3'" H N N 189 DC "H2'" H N N 190 DC "H2''" H N N 191 DC "H1'" H N N 192 DC H41 H N N 193 DC H42 H N N 194 DC H5 H N N 195 DC H6 H N N 196 DG OP3 O N N 197 DG P P N N 198 DG OP1 O N N 199 DG OP2 O N N 200 DG "O5'" O N N 201 DG "C5'" C N N 202 DG "C4'" C N R 203 DG "O4'" O N N 204 DG "C3'" C N S 205 DG "O3'" O N N 206 DG "C2'" C N N 207 DG "C1'" C N R 208 DG N9 N Y N 209 DG C8 C Y N 210 DG N7 N Y N 211 DG C5 C Y N 212 DG C6 C N N 213 DG O6 O N N 214 DG N1 N N N 215 DG C2 C N N 216 DG N2 N N N 217 DG N3 N N N 218 DG C4 C Y N 219 DG HOP3 H N N 220 DG HOP2 H N N 221 DG "H5'" H N N 222 DG "H5''" H N N 223 DG "H4'" H N N 224 DG "H3'" H N N 225 DG "HO3'" H N N 226 DG "H2'" H N N 227 DG "H2''" H N N 228 DG "H1'" H N N 229 DG H8 H N N 230 DG H1 H N N 231 DG H21 H N N 232 DG H22 H N N 233 DT OP3 O N N 234 DT P P N N 235 DT OP1 O N N 236 DT OP2 O N N 237 DT "O5'" O N N 238 DT "C5'" C N N 239 DT "C4'" C N R 240 DT "O4'" O N N 241 DT "C3'" C N S 242 DT "O3'" O N N 243 DT "C2'" C N N 244 DT "C1'" C N R 245 DT N1 N N N 246 DT C2 C N N 247 DT O2 O N N 248 DT N3 N N N 249 DT C4 C N N 250 DT O4 O N N 251 DT C5 C N N 252 DT C7 C N N 253 DT C6 C N N 254 DT HOP3 H N N 255 DT HOP2 H N N 256 DT "H5'" H N N 257 DT "H5''" H N N 258 DT "H4'" H N N 259 DT "H3'" H N N 260 DT "HO3'" H N N 261 DT "H2'" H N N 262 DT "H2''" H N N 263 DT "H1'" H N N 264 DT H3 H N N 265 DT H71 H N N 266 DT H72 H N N 267 DT H73 H N N 268 DT H6 H N N 269 ERI O1 O N N 270 ERI C1 C N R 271 ERI C2 C N N 272 ERI C3 C N S 273 ERI O3 O N N 274 ERI CC3 C N N 275 ERI C4 C N S 276 ERI O4 O N N 277 ERI CME C N N 278 ERI CO4 C N N 279 ERI OC4 O N N 280 ERI C5 C N S 281 ERI O5 O N N 282 ERI C6 C N N 283 ERI HO1 H N N 284 ERI H1 H N N 285 ERI H21 H N N 286 ERI H22 H N N 287 ERI HO3 H N N 288 ERI H31 H N N 289 ERI H32 H N N 290 ERI H33 H N N 291 ERI H4 H N N 292 ERI H41 H N N 293 ERI H42 H N N 294 ERI H43 H N N 295 ERI H5 H N N 296 ERI H61 H N N 297 ERI H62 H N N 298 ERI H63 H N N 299 HOH O O N N 300 HOH H1 H N N 301 HOH H2 H N N 302 NI NI NI N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GL O1 C1 sing N N 1 1GL O1 HO1 sing N N 2 1GL C1 C2 sing N N 3 1GL C1 O5 sing N N 4 1GL C1 H1 sing N N 5 1GL C2 C3 sing N N 6 1GL C2 H2 sing N N 7 1GL C2 H22 sing N N 8 1GL C3 O3 sing N N 9 1GL C3 C4 sing N N 10 1GL C3 H3 sing N N 11 1GL O3 HO3 sing N N 12 1GL C4 O4 sing N N 13 1GL C4 C5 sing N N 14 1GL C4 H4 sing N N 15 1GL O4 CME sing N N 16 1GL CME HM41 sing N N 17 1GL CME HM42 sing N N 18 1GL CME HM43 sing N N 19 1GL C5 O5 sing N N 20 1GL C5 C6 sing N N 21 1GL C5 H5 sing N N 22 1GL C6 H61 sing N N 23 1GL C6 H62 sing N N 24 1GL C6 H63 sing N N 25 ARI O1 C1 sing N N 26 ARI O1 HO1 sing N N 27 ARI C1 C2 sing N N 28 ARI C1 O5 sing N N 29 ARI C1 H1 sing N N 30 ARI C2 C3 sing N N 31 ARI C2 H2 sing N N 32 ARI C2 H22 sing N N 33 ARI C3 C4 sing N N 34 ARI C3 H3 sing N N 35 ARI C3 H32 sing N N 36 ARI C4 O4 sing N N 37 ARI C4 C5 sing N N 38 ARI C4 H4 sing N N 39 ARI O4 CO4 sing N N 40 ARI CME CO4 sing N N 41 ARI CME H41 sing N N 42 ARI CME H42 sing N N 43 ARI CME H43 sing N N 44 ARI CO4 OC4 doub N N 45 ARI C5 O5 sing N N 46 ARI C5 C6 sing N N 47 ARI C5 H5 sing N N 48 ARI C6 H61 sing N N 49 ARI C6 H62 sing N N 50 ARI C6 H63 sing N N 51 CDR O1 C1 sing N N 52 CDR O1 HO1 sing N N 53 CDR C1 C2 sing N N 54 CDR C1 O5 sing N N 55 CDR C1 H1 sing N N 56 CDR C2 C3 sing N N 57 CDR C2 H2 sing N N 58 CDR C2 H22 sing N N 59 CDR C3 C4 sing N N 60 CDR C3 H3 sing N N 61 CDR C3 H32 sing N N 62 CDR C4 O4 sing N N 63 CDR C4 C5 sing N N 64 CDR C4 H4 sing N N 65 CDR O4 HO4 sing N N 66 CDR C5 O5 sing N N 67 CDR C5 C6 sing N N 68 CDR C5 H5 sing N N 69 CDR C6 H61 sing N N 70 CDR C6 H62 sing N N 71 CDR C6 H63 sing N N 72 CPH O1 C1 doub N N 73 CPH C9A C1 sing N N 74 CPH C1 C2 sing N N 75 CPH C2 O2 sing N N 76 CPH C2 C3 sing N N 77 CPH C2 H2 sing N N 78 CPH C3 C4 sing N N 79 CPH C3 "C1'" sing N N 80 CPH C3 H3 sing N N 81 CPH C4A C4 sing N N 82 CPH C4 H4 sing N N 83 CPH C4 H4A sing N N 84 CPH C6 C5 doub Y N 85 CPH C5 C5A sing Y N 86 CPH C5 H5 sing N N 87 CPH C7 C6 sing Y N 88 CPH O6 C6 sing N N 89 CPH CC7 C7 sing N N 90 CPH C7 C8 doub Y N 91 CPH O8 C8 sing N N 92 CPH C8 C8A sing Y N 93 CPH O8 HO8 sing N N 94 CPH O9 C9 sing N N 95 CPH C8A C9 doub Y N 96 CPH C9 C9A sing Y N 97 CPH O9 HO9 sing N N 98 CPH "C2'" "C1'" sing N N 99 CPH "C1'" "O1'" sing N N 100 CPH "C1'" "H1'" sing N N 101 CPH "O1'" CME sing N N 102 CPH C5A C10 doub Y N 103 CPH C10 C4A sing Y N 104 CPH C10 H10 sing N N 105 CPH "O2'" "C2'" doub N N 106 CPH "C2'" "C3'" sing N N 107 CPH "O3'" "C3'" sing N N 108 CPH "C3'" "C4'" sing N N 109 CPH "C3'" "H3'" sing N N 110 CPH "O3'" "HO3'" sing N N 111 CPH "O4'" "C4'" sing N N 112 CPH "C4'" "C5'" sing N N 113 CPH "C4'" "H4'" sing N N 114 CPH "O4'" "HO4'" sing N N 115 CPH C9A C4A doub Y N 116 CPH "C5'" "H5'" sing N N 117 CPH "C5'" "H5'A" sing N N 118 CPH "C5'" "H5'B" sing N N 119 CPH C8A C5A sing Y N 120 CPH CC7 HC7 sing N N 121 CPH CC7 HC7A sing N N 122 CPH CC7 HC7B sing N N 123 CPH O6 HO6 sing N N 124 CPH O2 HO2 sing N N 125 CPH CME HME sing N N 126 CPH CME HMEA sing N N 127 CPH CME HMEB sing N N 128 DA OP3 P sing N N 129 DA OP3 HOP3 sing N N 130 DA P OP1 doub N N 131 DA P OP2 sing N N 132 DA P "O5'" sing N N 133 DA OP2 HOP2 sing N N 134 DA "O5'" "C5'" sing N N 135 DA "C5'" "C4'" sing N N 136 DA "C5'" "H5'" sing N N 137 DA "C5'" "H5''" sing N N 138 DA "C4'" "O4'" sing N N 139 DA "C4'" "C3'" sing N N 140 DA "C4'" "H4'" sing N N 141 DA "O4'" "C1'" sing N N 142 DA "C3'" "O3'" sing N N 143 DA "C3'" "C2'" sing N N 144 DA "C3'" "H3'" sing N N 145 DA "O3'" "HO3'" sing N N 146 DA "C2'" "C1'" sing N N 147 DA "C2'" "H2'" sing N N 148 DA "C2'" "H2''" sing N N 149 DA "C1'" N9 sing N N 150 DA "C1'" "H1'" sing N N 151 DA N9 C8 sing Y N 152 DA N9 C4 sing Y N 153 DA C8 N7 doub Y N 154 DA C8 H8 sing N N 155 DA N7 C5 sing Y N 156 DA C5 C6 sing Y N 157 DA C5 C4 doub Y N 158 DA C6 N6 sing N N 159 DA C6 N1 doub Y N 160 DA N6 H61 sing N N 161 DA N6 H62 sing N N 162 DA N1 C2 sing Y N 163 DA C2 N3 doub Y N 164 DA C2 H2 sing N N 165 DA N3 C4 sing Y N 166 DC OP3 P sing N N 167 DC OP3 HOP3 sing N N 168 DC P OP1 doub N N 169 DC P OP2 sing N N 170 DC P "O5'" sing N N 171 DC OP2 HOP2 sing N N 172 DC "O5'" "C5'" sing N N 173 DC "C5'" "C4'" sing N N 174 DC "C5'" "H5'" sing N N 175 DC "C5'" "H5''" sing N N 176 DC "C4'" "O4'" sing N N 177 DC "C4'" "C3'" sing N N 178 DC "C4'" "H4'" sing N N 179 DC "O4'" "C1'" sing N N 180 DC "C3'" "O3'" sing N N 181 DC "C3'" "C2'" sing N N 182 DC "C3'" "H3'" sing N N 183 DC "O3'" "HO3'" sing N N 184 DC "C2'" "C1'" sing N N 185 DC "C2'" "H2'" sing N N 186 DC "C2'" "H2''" sing N N 187 DC "C1'" N1 sing N N 188 DC "C1'" "H1'" sing N N 189 DC N1 C2 sing N N 190 DC N1 C6 sing N N 191 DC C2 O2 doub N N 192 DC C2 N3 sing N N 193 DC N3 C4 doub N N 194 DC C4 N4 sing N N 195 DC C4 C5 sing N N 196 DC N4 H41 sing N N 197 DC N4 H42 sing N N 198 DC C5 C6 doub N N 199 DC C5 H5 sing N N 200 DC C6 H6 sing N N 201 DG OP3 P sing N N 202 DG OP3 HOP3 sing N N 203 DG P OP1 doub N N 204 DG P OP2 sing N N 205 DG P "O5'" sing N N 206 DG OP2 HOP2 sing N N 207 DG "O5'" "C5'" sing N N 208 DG "C5'" "C4'" sing N N 209 DG "C5'" "H5'" sing N N 210 DG "C5'" "H5''" sing N N 211 DG "C4'" "O4'" sing N N 212 DG "C4'" "C3'" sing N N 213 DG "C4'" "H4'" sing N N 214 DG "O4'" "C1'" sing N N 215 DG "C3'" "O3'" sing N N 216 DG "C3'" "C2'" sing N N 217 DG "C3'" "H3'" sing N N 218 DG "O3'" "HO3'" sing N N 219 DG "C2'" "C1'" sing N N 220 DG "C2'" "H2'" sing N N 221 DG "C2'" "H2''" sing N N 222 DG "C1'" N9 sing N N 223 DG "C1'" "H1'" sing N N 224 DG N9 C8 sing Y N 225 DG N9 C4 sing Y N 226 DG C8 N7 doub Y N 227 DG C8 H8 sing N N 228 DG N7 C5 sing Y N 229 DG C5 C6 sing N N 230 DG C5 C4 doub Y N 231 DG C6 O6 doub N N 232 DG C6 N1 sing N N 233 DG N1 C2 sing N N 234 DG N1 H1 sing N N 235 DG C2 N2 sing N N 236 DG C2 N3 doub N N 237 DG N2 H21 sing N N 238 DG N2 H22 sing N N 239 DG N3 C4 sing N N 240 DT OP3 P sing N N 241 DT OP3 HOP3 sing N N 242 DT P OP1 doub N N 243 DT P OP2 sing N N 244 DT P "O5'" sing N N 245 DT OP2 HOP2 sing N N 246 DT "O5'" "C5'" sing N N 247 DT "C5'" "C4'" sing N N 248 DT "C5'" "H5'" sing N N 249 DT "C5'" "H5''" sing N N 250 DT "C4'" "O4'" sing N N 251 DT "C4'" "C3'" sing N N 252 DT "C4'" "H4'" sing N N 253 DT "O4'" "C1'" sing N N 254 DT "C3'" "O3'" sing N N 255 DT "C3'" "C2'" sing N N 256 DT "C3'" "H3'" sing N N 257 DT "O3'" "HO3'" sing N N 258 DT "C2'" "C1'" sing N N 259 DT "C2'" "H2'" sing N N 260 DT "C2'" "H2''" sing N N 261 DT "C1'" N1 sing N N 262 DT "C1'" "H1'" sing N N 263 DT N1 C2 sing N N 264 DT N1 C6 sing N N 265 DT C2 O2 doub N N 266 DT C2 N3 sing N N 267 DT N3 C4 sing N N 268 DT N3 H3 sing N N 269 DT C4 O4 doub N N 270 DT C4 C5 sing N N 271 DT C5 C7 sing N N 272 DT C5 C6 doub N N 273 DT C7 H71 sing N N 274 DT C7 H72 sing N N 275 DT C7 H73 sing N N 276 DT C6 H6 sing N N 277 ERI O1 C1 sing N N 278 ERI O1 HO1 sing N N 279 ERI C1 C2 sing N N 280 ERI C1 O5 sing N N 281 ERI C1 H1 sing N N 282 ERI C2 C3 sing N N 283 ERI C2 H21 sing N N 284 ERI C2 H22 sing N N 285 ERI C3 O3 sing N N 286 ERI C3 CC3 sing N N 287 ERI C3 C4 sing N N 288 ERI O3 HO3 sing N N 289 ERI CC3 H31 sing N N 290 ERI CC3 H32 sing N N 291 ERI CC3 H33 sing N N 292 ERI C4 O4 sing N N 293 ERI C4 C5 sing N N 294 ERI C4 H4 sing N N 295 ERI O4 CO4 sing N N 296 ERI CME CO4 sing N N 297 ERI CME H41 sing N N 298 ERI CME H42 sing N N 299 ERI CME H43 sing N N 300 ERI CO4 OC4 doub N N 301 ERI C5 O5 sing N N 302 ERI C5 C6 sing N N 303 ERI C5 H5 sing N N 304 ERI C6 H61 sing N N 305 ERI C6 H62 sing N N 306 ERI C6 H63 sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6L76 'double helix' 6L76 'a-form double helix' 6L76 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -0.118 -0.262 0.309 2.623 -12.507 -0.182 1 A_DT1:DA20_B A 1 ? B 20 ? 20 1 1 A DT 2 1_555 B DA 9 1_555 -0.146 -0.129 0.564 0.595 -3.784 -0.195 2 A_DT2:DA19_B A 2 ? B 19 ? 20 1 1 A DG 3 1_555 B DC 8 1_555 -0.060 -0.180 0.740 15.587 6.239 -0.339 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.176 -0.212 0.536 7.214 -8.313 1.060 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 -0.172 -0.228 0.546 -4.223 -3.699 0.807 5 A_DG5:DC16_B A 5 ? B 16 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 0.161 -0.085 0.178 -7.215 -7.346 2.975 6 A_DC6:DG15_B A 6 ? B 15 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 -0.044 -0.686 0.099 2.072 -7.578 1.502 7 A_DC7:DG14_B A 7 ? B 14 ? 22 1 1 A DG 8 1_555 B DC 3 1_555 -0.128 -0.209 0.250 11.620 -1.924 1.359 8 A_DG8:DC13_B A 8 ? B 13 ? 19 1 1 A DA 9 1_555 B DT 2 1_555 0.119 -0.109 -0.741 6.459 -8.208 1.354 9 A_DA9:DT12_B A 9 ? B 12 ? 20 1 1 A DA 10 1_555 B DT 1 1_555 0.600 -0.235 -0.642 -9.685 -14.542 0.657 10 A_DA10:DT11_B A 10 ? B 11 ? 20 1 1 C DT 1 1_555 D DA 10 1_555 0.037 -0.148 0.151 -3.250 -9.488 1.778 11 C_DT1:DA20_D C 1 ? D 20 ? 20 1 1 C DT 2 1_555 D DA 9 1_555 -0.145 -0.034 -0.118 0.521 -5.735 -2.469 12 C_DT2:DA19_D C 2 ? D 19 ? 20 1 1 C DC 3 1_555 D DG 8 1_555 0.224 -0.104 0.055 2.633 0.255 1.934 13 C_DC3:DG18_D C 3 ? D 18 ? 19 1 1 C DG 4 1_555 D DC 7 1_555 -0.193 -0.205 0.394 4.284 -4.563 0.628 14 C_DG4:DC17_D C 4 ? D 17 ? 19 1 1 C DG 5 1_555 D DC 6 1_555 -0.293 -0.584 0.406 0.624 -1.638 0.467 15 C_DG5:DC16_D C 5 ? D 16 ? 19 1 1 C DC 6 1_555 D DG 5 1_555 0.216 -0.754 -0.017 -0.136 -6.767 0.034 16 C_DC6:DG15_D C 6 ? D 15 ? 22 1 1 C DC 7 1_555 D DG 4 1_555 0.163 -0.180 0.209 -2.528 -1.726 1.613 17 C_DC7:DG14_D C 7 ? D 14 ? 19 1 1 C DC 8 1_555 D DG 3 1_555 0.202 -0.153 -0.221 9.957 6.442 0.661 18 C_DC8:DG13_D C 8 ? D 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.024 -0.594 3.211 0.785 9.423 34.362 -2.288 0.149 2.950 15.588 -1.298 35.602 1 AA_DT1DT2:DA19DA20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DT 2 1_555 B DA 9 1_555 A DG 3 1_555 B DC 8 1_555 0.467 -0.701 2.748 -3.578 2.560 33.725 -1.536 -1.269 2.627 4.389 6.136 34.002 2 AA_DT2DG3:DC18DA19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.155 -0.623 3.389 0.021 3.600 44.343 -1.165 -0.203 3.331 4.760 -0.027 44.482 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 1.503 -2.611 3.502 1.885 2.401 20.731 -8.247 -3.296 3.303 6.626 -5.201 20.952 4 AA_DG4DG5:DC16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 0.224 -2.259 3.201 2.661 -1.380 33.872 -3.644 0.039 3.295 -2.363 -4.557 34.000 5 AA_DG5DC6:DG15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DC 6 1_555 B DG 5 1_555 A DC 7 1_555 B DG 4 1_555 -1.504 -1.934 3.087 -2.391 2.672 22.882 -5.684 2.972 2.984 6.683 5.980 23.158 6 AA_DC6DC7:DG14DG15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DC 7 1_555 B DG 4 1_555 A DG 8 1_555 B DC 3 1_555 0.379 -0.690 2.912 5.833 6.038 31.238 -2.183 0.230 2.758 10.967 -10.594 32.320 7 AA_DC7DG8:DC13DG14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DG 8 1_555 B DC 3 1_555 A DA 9 1_555 B DT 2 1_555 0.023 -0.141 3.374 9.586 16.006 32.306 -2.420 1.280 2.891 26.218 -15.701 37.182 8 AA_DG8DA9:DT12DC13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DA 9 1_555 B DT 2 1_555 A DA 10 1_555 B DT 1 1_555 0.494 -0.108 3.866 0.036 0.015 37.353 -0.171 -0.765 3.866 0.024 -0.057 37.353 9 AA_DA9DA10:DT11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 C DT 1 1_555 D DA 10 1_555 C DT 2 1_555 D DA 9 1_555 -0.234 0.143 3.031 0.019 1.426 36.517 0.045 0.375 3.034 2.275 -0.030 36.544 10 CC_DT1DT2:DA19DA20_DD C 1 ? D 20 ? C 2 ? D 19 ? 1 C DT 2 1_555 D DA 9 1_555 C DC 3 1_555 D DG 8 1_555 0.701 -0.610 3.264 -3.777 4.540 36.127 -1.582 -1.625 3.080 7.261 6.041 36.590 11 CC_DT2DC3:DG18DA19_DD C 2 ? D 19 ? C 3 ? D 18 ? 1 C DC 3 1_555 D DG 8 1_555 C DG 4 1_555 D DC 7 1_555 0.014 -0.416 3.199 -4.929 0.523 39.127 -0.677 -0.589 3.169 0.776 7.323 39.427 12 CC_DC3DG4:DC17DG18_DD C 3 ? D 18 ? C 4 ? D 17 ? 1 C DG 4 1_555 D DC 7 1_555 C DG 5 1_555 D DC 6 1_555 1.391 -2.593 3.228 0.810 4.985 18.834 -9.846 -3.754 2.520 14.889 -2.419 19.494 13 CC_DG4DG5:DC16DC17_DD C 4 ? D 17 ? C 5 ? D 16 ? 1 C DG 5 1_555 D DC 6 1_555 C DC 6 1_555 D DG 5 1_555 -0.359 -2.197 3.228 2.239 -1.910 35.396 -3.322 0.916 3.310 -3.134 -3.675 35.514 14 CC_DG5DC6:DG15DC16_DD C 5 ? D 16 ? C 6 ? D 15 ? 1 C DC 6 1_555 D DG 5 1_555 C DC 7 1_555 D DG 4 1_555 -1.294 -2.579 3.270 -5.616 2.287 21.620 -7.481 1.229 3.211 5.948 14.605 22.444 15 CC_DC6DC7:DG14DG15_DD C 6 ? D 15 ? C 7 ? D 14 ? 1 C DC 7 1_555 D DG 4 1_555 C DC 8 1_555 D DG 3 1_555 -0.366 -0.922 3.026 1.728 4.208 37.115 -1.941 0.777 2.889 6.580 -2.702 37.383 16 CC_DC7DC8:DG13DG14_DD C 7 ? D 14 ? C 8 ? D 13 ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 3 ARI 1 E ARI 1 E ARI 22 n E 3 1GL 2 E 1GL 2 E 1GL 21 n F 4 CDR 1 F CDR 1 E CDR 34 n F 4 CDR 2 F CDR 2 E CDR 35 n F 4 ERI 3 F ERI 3 E ERI 36 n G 4 CDR 1 G CDR 1 E CDR 24 n G 4 CDR 2 G CDR 2 E CDR 25 n G 4 ERI 3 G ERI 3 E ERI 26 n H 3 ARI 1 H ARI 1 E ARI 32 n H 3 1GL 2 H 1GL 2 E 1GL 31 n I 3 ARI 1 I ARI 1 F ARI 22 n I 3 1GL 2 I 1GL 2 F 1GL 21 n J 4 CDR 1 J CDR 1 F CDR 24 n J 4 CDR 2 J CDR 2 F CDR 25 n J 4 ERI 3 J ERI 3 F ERI 26 n K 3 ARI 1 K ARI 1 F ARI 32 n K 3 1GL 2 K 1GL 2 F 1GL 31 n L 4 CDR 1 L CDR 1 F CDR 34 n L 4 CDR 2 L CDR 2 F CDR 35 n L 4 ERI 3 L ERI 3 F ERI 36 n # _pdbx_chem_comp_identifier.comp_id 1GL _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 2 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? 3 4 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 4 4 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 1 ARI C3 H3 2 1GL O1 HO1 sing ? 2 4 1 CDR C3 H3 2 CDR O1 HO1 sing ? 3 4 2 CDR C3 H3 3 ERI O1 HO1 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 ARI 1 n 3 1GL 2 n 4 CDR 1 n 4 CDR 2 n 4 ERI 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 6 'NICKEL (II) ION' NI 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1VAQ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #