HEADER DNA 31-OCT-19 6L76 TITLE CRYSTAL STRUCTURE OF THE NI(II)(CHRO)2-D(TTGGGCCGAA/TTCGGCCCAA) TITLE 2 COMPLEX AT 2.94 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*TP*GP*GP*GP*CP*CP*GP*AP*A)-3'); COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*TP*CP*GP*GP*CP*CP*CP*AP*A)-3'); COMPND 7 CHAIN: B, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS DUPLEX DNA, GGGGCC MOTIF, NUCLEOTIDE FLIPPING-OUT, HOOGSTEEN BASE KEYWDS 2 PAIR, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.H.HOU,C.R.JHAN,R.B.SATANGE,S.M.LIN REVDAT 4 22-NOV-23 6L76 1 REMARK REVDAT 3 06-OCT-21 6L76 1 JRNL REVDAT 2 26-MAY-21 6L76 1 JRNL REVDAT 1 13-JAN-21 6L76 0 JRNL AUTH C.R.JHAN,R.SATANGE,S.C.WANG,J.Y.ZENG,Y.C.HORNG,P.JIN, JRNL AUTH 2 S.NEIDLE,M.H.HOU JRNL TITL TARGETING THE ALS/FTD-ASSOCIATED A-DNA KINK WITH JRNL TITL 2 ANTHRACENE-BASED METAL COMPLEX CAUSES DNA BACKBONE JRNL TITL 3 STRAIGHTENING AND GROOVE CONTRACTION. JRNL REF NUCLEIC ACIDS RES. V. 49 9526 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33836081 JRNL DOI 10.1093/NAR/GKAB227 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.5100 - 6.0905 0.95 1181 134 0.2894 0.3213 REMARK 3 2 6.0905 - 4.8451 0.98 1190 140 0.2309 0.2852 REMARK 3 3 4.8451 - 4.2358 1.00 1213 142 0.2071 0.2493 REMARK 3 4 4.2358 - 3.8499 1.00 1220 141 0.2175 0.2473 REMARK 3 5 3.8499 - 3.5748 1.00 1214 138 0.2234 0.2799 REMARK 3 6 3.5748 - 3.3645 1.00 1232 142 0.2091 0.2299 REMARK 3 7 3.3645 - 3.1963 1.00 1222 137 0.1966 0.2844 REMARK 3 8 3.1963 - 3.0574 1.00 1219 138 0.2232 0.2651 REMARK 3 9 3.0574 - 2.9400 0.99 1207 136 0.2875 0.3086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1264 REMARK 3 ANGLE : 1.380 1843 REMARK 3 CHIRALITY : 0.578 236 REMARK 3 PLANARITY : 0.009 59 REMARK 3 DIHEDRAL : 29.415 418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -26.1521 6.1794 -14.6360 REMARK 3 T TENSOR REMARK 3 T11: 1.5720 T22: 0.3068 REMARK 3 T33: 0.6463 T12: 0.7793 REMARK 3 T13: 0.1047 T23: 0.2227 REMARK 3 L TENSOR REMARK 3 L11: 2.9085 L22: 1.9851 REMARK 3 L33: 1.1217 L12: -0.0884 REMARK 3 L13: -0.2765 L23: -0.5325 REMARK 3 S TENSOR REMARK 3 S11: 0.6300 S12: 0.7639 S13: -0.2108 REMARK 3 S21: 0.1659 S22: -1.1268 S23: 0.5923 REMARK 3 S31: -1.0954 S32: 0.1688 S33: 0.0927 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1VAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM TTGGGCCGAA, 1 MM TTCGGCCCAA, 3 MM REMARK 280 CHROMOMYCIN A3, 6 MM NISO4, 2.5 MM SPERMINE,40 MM SODIUM REMARK 280 CACODYLATE (PH=7), 4 % PEG 400, PH 7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.38533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.19267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.28900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.09633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 205.48167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 164.38533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.19267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.09633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 123.28900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 205.48167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA C 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 ARI K 1 C6 CPH D 103 1.37 REMARK 500 O1 ARI H 1 C6 CPH B 106 1.37 REMARK 500 O1 ARI I 1 C6 CPH C 103 1.38 REMARK 500 O1 ARI E 1 C6 CPH A 103 1.38 REMARK 500 O1 CDR G 1 C2 CPH A 103 1.60 REMARK 500 O1 CDR F 1 C2 CPH B 106 1.60 REMARK 500 O1 CDR L 1 C2 CPH D 103 1.60 REMARK 500 O1 CDR J 1 C2 CPH C 103 1.60 REMARK 500 C2 CDR F 1 O1 CDR F 2 2.05 REMARK 500 C2 CDR G 1 O1 CDR G 2 2.10 REMARK 500 O2 DC A 7 N2 DG B 14 2.11 REMARK 500 C1 CDR G 1 C2 CPH A 103 2.12 REMARK 500 O1 ARI I 1 C5 CPH C 103 2.14 REMARK 500 C4 CDR F 2 O1 ERI F 3 2.17 REMARK 500 O2 DC C 6 N2 DG D 15 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 6 O3' DC A 6 C3' -0.039 REMARK 500 DC B 17 C1' DC B 17 N1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 4 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT B 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 207 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 208 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 209 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH A 210 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH A 211 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A 212 DISTANCE = 8.89 ANGSTROMS REMARK 525 HOH B 210 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 211 DISTANCE = 7.67 ANGSTROMS REMARK 525 HOH C 208 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH D 207 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D 208 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH D 209 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH D 210 DISTANCE = 8.56 ANGSTROMS REMARK 525 HOH D 211 DISTANCE = 8.71 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPH A 103 REMARK 610 CPH B 106 REMARK 610 CPH C 103 REMARK 610 CPH D 103 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 107 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CPH A 103 O1 REMARK 620 2 CPH A 103 O9 90.8 REMARK 620 3 CPH B 106 O1 68.0 119.7 REMARK 620 4 CPH B 106 O9 71.4 142.5 84.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 107 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 15 N7 REMARK 620 2 HOH B 203 O 108.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 107 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CPH C 103 O1 REMARK 620 2 CPH C 103 O9 79.1 REMARK 620 3 CPH D 103 O1 62.6 76.4 REMARK 620 4 CPH D 103 O9 111.8 161.4 94.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 109 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 201 O REMARK 620 2 HOH D 202 O 163.3 REMARK 620 N 1 DBREF 6L76 A 1 10 PDB 6L76 6L76 1 10 DBREF 6L76 B 11 20 PDB 6L76 6L76 11 20 DBREF 6L76 C 1 10 PDB 6L76 6L76 1 10 DBREF 6L76 D 11 20 PDB 6L76 6L76 11 20 SEQRES 1 A 10 DT DT DG DG DG DC DC DG DA DA SEQRES 1 B 10 DT DT DC DG DG DC DC DC DA DA SEQRES 1 C 10 DT DT DC DG DG DC DC DC DA DA SEQRES 1 D 10 DT DT DG DG DG DC DC DG DA DA HET ARI E 1 12 HET 1GL E 2 11 HET CDR F 1 9 HET CDR F 2 9 HET ERI F 3 14 HET CDR G 1 9 HET CDR G 2 9 HET ERI G 3 14 HET ARI H 1 12 HET 1GL H 2 11 HET ARI I 1 12 HET 1GL I 2 11 HET CDR J 1 9 HET CDR J 2 9 HET ERI J 3 14 HET ARI K 1 12 HET 1GL K 2 11 HET CDR L 1 9 HET CDR L 2 9 HET ERI L 3 14 HET CPH A 103 28 HET NI A 107 1 HET NI A 108 1 HET CPH B 106 28 HET NI B 107 1 HET CPH C 103 28 HET NI C 107 1 HET CPH D 103 28 HET NI D 107 1 HET NI D 108 1 HET NI D 109 1 HETNAM ARI (2R,3R,6R)-6-HYDROXY-2-METHYLTETRAHYDRO-2H-PYRAN-3-YL HETNAM 2 ARI ACETATE HETNAM 1GL 2,6-DIDEOXY-4-O-METHYL-ALPHA-D-GALACTOPYRANOSE HETNAM CDR (2R,5S,6R)-6-METHYLTETRAHYDRO-2H-PYRAN-2,5-DIOL HETNAM ERI 3-C-METHYL-4-O-ACETYL-ALPHA-L-OLIVOPYRANOSE HETNAM CPH (1S)-5-DEOXY-1-O-METHYL-1-C-[(2R,3S)-3,5,7,10- HETNAM 2 CPH TETRAHYDROXY-6-METHYL-4-OXO-1,2,3,4- HETNAM 3 CPH TETRAHYDROANTHRACEN-2-YL]-D-XYLULOSE HETNAM NI NICKEL (II) ION HETSYN ARI [O4]-ACETOXY-2,3-DIDEOXYFUCOSE HETSYN 1GL 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2- HETSYN 2 1GL DEOXY-4-O-METHYL-ALPHA-D-FUCOPYRANOSE; 2,6-DIDEOXY-4- HETSYN 3 1GL O-METHYL-ALPHA-D-GALACTOSE; 2,6-DIDEOXY-4-O-METHYL-D- HETSYN 4 1GL GALACTOSE; 2,6-DIDEOXY-4-O-METHYL-GALACTOSE HETSYN CDR 2,3-DIDEOXYFUCOSE HETSYN ERI 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO- HETSYN 2 ERI HEXOPYRANOSE; 3-C-METHYL-4-O-ACETYL-ALPHA-L-OLIVOSE; HETSYN 3 ERI 3-C-METHYL-4-O-ACETYL-L-OLIVOSE; 3-C-METHYL-4-O- HETSYN 4 ERI ACETYL-OLIVOSE HETSYN CPH NONE FORMUL 5 ARI 4(C8 H14 O4) FORMUL 5 1GL 4(C7 H14 O4) FORMUL 6 CDR 8(C6 H12 O3) FORMUL 6 ERI 4(C9 H16 O5) FORMUL 13 CPH 4(C21 H24 O9) FORMUL 14 NI 7(NI 2+) FORMUL 24 HOH *42(H2 O) LINK C3 ARI E 1 O1 1GL E 2 1555 1555 1.37 LINK C3 CDR F 1 O1 CDR F 2 1555 1555 1.37 LINK C3 CDR F 2 O1 ERI F 3 1555 1555 1.38 LINK C3 CDR G 1 O1 CDR G 2 1555 1555 1.37 LINK C3 CDR G 2 O1 ERI G 3 1555 1555 1.38 LINK C3 ARI H 1 O1 1GL H 2 1555 1555 1.38 LINK C3 ARI I 1 O1 1GL I 2 1555 1555 1.37 LINK C3 CDR J 1 O1 CDR J 2 1555 1555 1.38 LINK C3 CDR J 2 O1 ERI J 3 1555 1555 1.37 LINK C3 ARI K 1 O1 1GL K 2 1555 1555 1.37 LINK C3 CDR L 1 O1 CDR L 2 1555 1555 1.44 LINK C3 CDR L 2 O1 ERI L 3 1555 1555 1.37 LINK N7 DG A 5 NI NI A 108 1555 1555 2.23 LINK O1 CPH A 103 NI NI A 107 1555 1555 1.98 LINK O9 CPH A 103 NI NI A 107 1555 1555 1.76 LINK NI NI A 107 O1 CPH B 106 1555 1555 2.29 LINK NI NI A 107 O9 CPH B 106 1555 1555 2.02 LINK N7 DG B 15 NI NI B 107 1555 1555 2.17 LINK NI NI B 107 O HOH B 203 1555 1555 2.17 LINK N7 DG C 5 NI NI C 107 1555 1555 2.27 LINK O1 CPH C 103 NI NI D 107 1555 1555 2.55 LINK O9 CPH C 103 NI NI D 107 1555 1555 1.93 LINK N7 DG D 13 NI NI D 108 1555 1555 2.27 LINK O1 CPH D 103 NI NI D 107 1555 1555 1.95 LINK O9 CPH D 103 NI NI D 107 1555 1555 1.88 LINK NI NI D 109 O HOH D 201 1555 1555 2.65 LINK NI NI D 109 O HOH D 202 1555 1555 2.58 CRYST1 64.718 64.718 246.578 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015452 0.008921 0.000000 0.00000 SCALE2 0.000000 0.017842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004056 0.00000