HEADER HYDROLASE 03-NOV-19 6L7V TITLE CRYSTAL STRUCTURE OF CET1 FROM TRYPANOSOMA CRUZI IN COMPLEX WITH TITLE 2 TRIPOLYPHOSPHATE, MANGANESE AND IODIDE IONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA_TRIPASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI STRAIN CL BRENER; SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053508479.390; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRNA CAPPING, RNA TRIPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,K.HO REVDAT 3 27-MAR-24 6L7V 1 REMARK REVDAT 2 15-JUL-20 6L7V 1 JRNL REVDAT 1 03-JUN-20 6L7V 0 JRNL AUTH Y.TAKAGI,N.KUWABARA,T.T.DANG,K.FURUKAWA,C.K.HO JRNL TITL CRYSTAL STRUCTURES OF THE RNA TRIPHOSPHATASE FROMTRYPANOSOMA JRNL TITL 2 CRUZIPROVIDE INSIGHTS INTO HOW IT RECOGNIZES THE 5'-END OF JRNL TITL 3 THE RNA SUBSTRATE. JRNL REF J.BIOL.CHEM. V. 295 9076 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32381506 JRNL DOI 10.1074/JBC.RA119.011811 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 19373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4200 - 4.2100 1.00 2676 140 0.1985 0.2535 REMARK 3 2 4.2100 - 3.3400 1.00 2638 174 0.2056 0.2223 REMARK 3 3 3.3400 - 2.9200 1.00 2699 118 0.2174 0.2814 REMARK 3 4 2.9200 - 2.6500 1.00 2701 152 0.2475 0.2557 REMARK 3 5 2.6500 - 2.4600 1.00 2687 128 0.2596 0.3184 REMARK 3 6 2.4600 - 2.3200 1.00 2669 118 0.2564 0.2884 REMARK 3 7 2.3200 - 2.2000 0.87 2355 118 0.4122 0.4671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.344 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1434 REMARK 3 ANGLE : 0.619 1944 REMARK 3 CHIRALITY : 0.045 229 REMARK 3 PLANARITY : 0.004 244 REMARK 3 DIHEDRAL : 11.959 858 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6629 15.3564 -22.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 0.3526 REMARK 3 T33: 0.3625 T12: -0.0148 REMARK 3 T13: 0.0843 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 8.9243 L22: 4.5694 REMARK 3 L33: 9.0021 L12: 1.8033 REMARK 3 L13: 2.3598 L23: 0.7119 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.1008 S13: 0.3399 REMARK 3 S21: 0.1478 S22: -0.0915 S23: 0.5046 REMARK 3 S31: -0.6548 S32: 0.3124 S33: -0.2178 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9121 21.8526 -0.1871 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.6184 REMARK 3 T33: 0.4836 T12: -0.0749 REMARK 3 T13: -0.0561 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.5139 L22: 4.8408 REMARK 3 L33: 8.2592 L12: -1.2048 REMARK 3 L13: 1.4719 L23: 2.5874 REMARK 3 S TENSOR REMARK 3 S11: 0.2936 S12: 0.2099 S13: -0.6665 REMARK 3 S21: -0.3969 S22: -0.1498 S23: 0.7626 REMARK 3 S31: 0.8059 S32: -1.1529 S33: -0.1564 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3935 17.7701 12.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.5767 T22: 0.4962 REMARK 3 T33: 0.6366 T12: 0.1066 REMARK 3 T13: -0.0197 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.2000 L22: 6.1045 REMARK 3 L33: 7.9147 L12: 1.7541 REMARK 3 L13: 0.0796 L23: 3.2615 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: 0.0223 S13: -1.4855 REMARK 3 S21: -0.7215 S22: 0.4113 S23: -0.6042 REMARK 3 S31: 1.0115 S32: 1.3434 S33: -0.5269 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4124 28.0972 21.9572 REMARK 3 T TENSOR REMARK 3 T11: 0.3330 T22: 0.3605 REMARK 3 T33: 0.3262 T12: -0.0668 REMARK 3 T13: -0.0137 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 8.9433 L22: 3.3263 REMARK 3 L33: 8.9957 L12: -7.2235 REMARK 3 L13: 0.5103 L23: 2.1166 REMARK 3 S TENSOR REMARK 3 S11: -0.3552 S12: -0.6131 S13: -0.1826 REMARK 3 S21: 0.7566 S22: 0.4488 S23: 0.0909 REMARK 3 S31: 0.4771 S32: -0.2038 S33: -0.0408 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3740 14.1719 12.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.5164 T22: 0.6599 REMARK 3 T33: 0.5330 T12: -0.2273 REMARK 3 T13: -0.0071 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 3.8819 L22: 6.3853 REMARK 3 L33: 4.7121 L12: 0.5395 REMARK 3 L13: -0.1844 L23: -0.8493 REMARK 3 S TENSOR REMARK 3 S11: -0.4663 S12: 0.5382 S13: -0.7685 REMARK 3 S21: -0.6366 S22: 0.7425 S23: -0.1403 REMARK 3 S31: 1.0336 S32: -0.4956 S33: -0.3640 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7545 20.8908 3.9685 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.4789 REMARK 3 T33: 0.5101 T12: 0.0115 REMARK 3 T13: 0.0244 T23: -0.1134 REMARK 3 L TENSOR REMARK 3 L11: 1.3475 L22: 1.3975 REMARK 3 L33: 5.3509 L12: 0.1887 REMARK 3 L13: -0.6273 L23: -1.3195 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: 0.0870 S13: -0.3768 REMARK 3 S21: -0.3798 S22: -0.1170 S23: 0.1852 REMARK 3 S31: 0.7561 S32: -0.6434 S33: 0.3392 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1810 21.3408 1.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.4922 T22: 0.5650 REMARK 3 T33: 0.3403 T12: -0.0828 REMARK 3 T13: -0.0124 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 8.8429 L22: 8.6239 REMARK 3 L33: 3.5917 L12: 4.8710 REMARK 3 L13: 7.5011 L23: 4.6858 REMARK 3 S TENSOR REMARK 3 S11: 0.1361 S12: -0.8275 S13: -0.5723 REMARK 3 S21: -0.2694 S22: -0.3699 S23: 0.2704 REMARK 3 S31: 1.1830 S32: -1.4778 S33: 0.2618 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9830 21.6143 9.6748 REMARK 3 T TENSOR REMARK 3 T11: 0.3019 T22: 0.3722 REMARK 3 T33: 0.3832 T12: -0.0213 REMARK 3 T13: -0.0027 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 6.0105 L22: 5.7361 REMARK 3 L33: 7.3321 L12: 0.9496 REMARK 3 L13: -1.0963 L23: -1.9024 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.4123 S13: -0.5474 REMARK 3 S21: -0.3191 S22: 0.0469 S23: 0.0358 REMARK 3 S31: 0.7022 S32: -0.2890 S33: -0.0996 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6666 34.3064 9.0777 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.3311 REMARK 3 T33: 0.4256 T12: 0.0484 REMARK 3 T13: 0.0539 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 10.3462 L22: 2.0728 REMARK 3 L33: 8.9964 L12: -0.8357 REMARK 3 L13: 3.0804 L23: -0.6988 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.1287 S13: 0.2232 REMARK 3 S21: -0.0610 S22: -0.1921 S23: -0.2332 REMARK 3 S31: -0.4834 S32: -0.3087 S33: 0.1052 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.60 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 5.85400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE (PH 5.0), 1,4 REMARK 280 -BUTANDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.21333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.60667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.60667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 VAL A 73 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 ASP A 76 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 ARG A 115 REMARK 465 GLY A 116 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 LEU A 167 REMARK 465 ARG A 168 REMARK 465 PHE A 169 REMARK 465 SER A 170 REMARK 465 GLY A 171 REMARK 465 ALA A 172 REMARK 465 GLY A 173 REMARK 465 PRO A 174 REMARK 465 ARG A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 218 REMARK 465 GLU A 219 REMARK 465 ASN A 243 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ASN A 38 CG OD1 ND2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 VAL A 112 CG1 CG2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 MET A 191 CG SD CE REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 -166.61 64.51 REMARK 500 ASN A 78 -67.52 -107.00 REMARK 500 THR A 130 -98.59 -97.20 REMARK 500 MET A 191 37.56 -97.37 REMARK 500 LYS A 202 48.89 -164.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE1 REMARK 620 2 GLU A 210 OE2 72.4 REMARK 620 3 3PO A 302 O2A 109.1 146.8 REMARK 620 4 3PO A 302 O1B 107.8 121.0 90.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 309 DBREF 6L7V A 18 243 UNP Q4E2I1 Q4E2I1_TRYCC 18 243 SEQADV 6L7V GLY A 14 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7V PRO A 15 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7V GLY A 16 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7V SER A 17 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7V A UNP Q4E2I1 ASP 55 DELETION SEQADV 6L7V A UNP Q4E2I1 ALA 56 DELETION SEQADV 6L7V A UNP Q4E2I1 LEU 57 DELETION SEQADV 6L7V A UNP Q4E2I1 ARG 58 DELETION SEQADV 6L7V A UNP Q4E2I1 GLU 59 DELETION SEQADV 6L7V A UNP Q4E2I1 ASN 60 DELETION SEQADV 6L7V A UNP Q4E2I1 THR 61 DELETION SEQADV 6L7V A UNP Q4E2I1 SER 62 DELETION SEQADV 6L7V A UNP Q4E2I1 ASP 63 DELETION SEQADV 6L7V A UNP Q4E2I1 GLN 64 DELETION SEQADV 6L7V A UNP Q4E2I1 ASN 65 DELETION SEQADV 6L7V A UNP Q4E2I1 GLY 66 DELETION SEQADV 6L7V A UNP Q4E2I1 ALA 67 DELETION SEQADV 6L7V A UNP Q4E2I1 GLN 68 DELETION SEQADV 6L7V A UNP Q4E2I1 THR 69 DELETION SEQADV 6L7V A UNP Q4E2I1 ASN 70 DELETION SEQADV 6L7V A UNP Q4E2I1 GLY 71 DELETION SEQADV 6L7V A UNP Q4E2I1 LEU 72 DELETION SEQADV 6L7V A UNP Q4E2I1 ARG 73 DELETION SEQADV 6L7V A UNP Q4E2I1 ILE 74 DELETION SEQADV 6L7V A UNP Q4E2I1 VAL 75 DELETION SEQADV 6L7V ASN A 126 UNP Q4E2I1 ASP 126 ENGINEERED MUTATION SEQRES 1 A 209 GLY PRO GLY SER ASP ALA GLU GLN ARG ALA VAL ALA LYS SEQRES 2 A 209 ALA LEU PHE ASP ALA VAL ASN LYS HIS LEU SER ASN PRO SEQRES 3 A 209 PHE ILE GLU VAL GLU MET ARG LEU GLY GLN PHE LYS VAL SEQRES 4 A 209 GLU GLU ASP ALA ASN PHE THR ALA CYS VAL SER THR GLU SEQRES 5 A 209 ASP TYR GLU ARG ILE LYS THR TYR LEU MET THR GLU MET SEQRES 6 A 209 GLU ASN SER SER MET THR ARG SER VAL THR HIS ASP VAL SEQRES 7 A 209 SER LEU ARG GLY TRP ARG HIS THR TYR ALA THR ASP GLU SEQRES 8 A 209 ASN GLY ASN PRO THR ARG CYS VAL SER ILE VAL ARG LYS SEQRES 9 A 209 LYS ARG LEU PHE VAL LYS ASN ILE VAL VAL PRO LEU GLY SEQRES 10 A 209 ALA TYR ASN LEU ARG PHE ALA VAL SER THR GLU THR PRO SEQRES 11 A 209 GLY ASP LEU ARG PHE SER GLY ALA GLY PRO ARG ALA GLY SEQRES 12 A 209 HIS THR ARG LEU LYS ASP ARG LEU SER ILE THR ASP GLY SEQRES 13 A 209 MET PHE ARG TYR ASP MET THR GLN VAL THR GLU LYS GLY SEQRES 14 A 209 VAL LEU MET HIS GLU VAL GLU ILE GLU GLY VAL PHE SER SEQRES 15 A 209 SER HIS GLU LYS GLN LEU THR GLU SER TRP LEU GLU GLU SEQRES 16 A 209 LEU LEU ARG ARG ALA MET ARG LEU ALA THR LEU ARG THR SEQRES 17 A 209 ASN HET MN A 301 1 HET 3PO A 302 13 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET IOD A 309 1 HETNAM MN MANGANESE (II) ION HETNAM 3PO TRIPHOSPHATE HETNAM IOD IODIDE ION FORMUL 2 MN MN 2+ FORMUL 3 3PO H5 O10 P3 FORMUL 4 IOD 7(I 1-) FORMUL 11 HOH *26(H2 O) HELIX 1 AA1 ASP A 18 SER A 37 1 20 HELIX 2 AA2 SER A 84 MET A 99 1 16 HELIX 3 AA3 THR A 223 THR A 239 1 17 SHEET 1 AA110 PHE A 79 THR A 80 0 SHEET 2 AA110 PHE A 40 PHE A 50 -1 N GLN A 49 O THR A 80 SHEET 3 AA110 LEU A 205 PHE A 215 -1 O PHE A 215 N ILE A 41 SHEET 4 AA110 PHE A 192 THR A 200 -1 N THR A 197 O GLU A 208 SHEET 5 AA110 ARG A 180 ASP A 189 -1 N ILE A 187 O TYR A 194 SHEET 6 AA110 THR A 105 VAL A 112 -1 N ASP A 111 O ARG A 180 SHEET 7 AA110 ARG A 118 THR A 123 -1 O HIS A 119 N VAL A 112 SHEET 8 AA110 PRO A 129 ILE A 146 -1 O VAL A 136 N ARG A 118 SHEET 9 AA110 ASN A 154 THR A 163 -1 O PHE A 157 N LYS A 144 SHEET 10 AA110 PHE A 40 PHE A 50 -1 N GLU A 42 O SER A 160 LINK OE1 GLU A 44 MN MN A 301 1555 1555 2.64 LINK OE2 GLU A 210 MN MN A 301 1555 1555 2.15 LINK MN MN A 301 O2A 3PO A 302 1555 1555 2.29 LINK MN MN A 301 O1B 3PO A 302 1555 1555 2.31 SITE 1 AC1 4 GLU A 42 GLU A 44 GLU A 210 3PO A 302 SITE 1 AC2 9 GLU A 42 ARG A 46 ARG A 118 LYS A 138 SITE 2 AC2 9 GLU A 162 LYS A 182 ARG A 184 GLU A 210 SITE 3 AC2 9 MN A 301 SITE 1 AC3 2 ARG A 46 ARG A 156 SITE 1 AC4 2 GLN A 21 MET A 235 SITE 1 AC5 1 GLN A 49 SITE 1 AC6 1 THR A 239 SITE 1 AC7 1 ASP A 111 CRYST1 67.266 67.266 76.820 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014866 0.008583 0.000000 0.00000 SCALE2 0.000000 0.017166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013017 0.00000