HEADER HYDROLASE 03-NOV-19 6L7X TITLE CRYSTAL STRUCTURE OF CET1 FROM TRYPANOSOMA CRUZI IN COMPLEX WITH #951 TITLE 2 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA_TRIPASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI STRAIN CL BRENER; SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053508479.390; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRNA CAPPING, RNA TRIPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,K.HO REVDAT 3 22-NOV-23 6L7X 1 REMARK REVDAT 2 15-JUL-20 6L7X 1 JRNL REVDAT 1 03-JUN-20 6L7X 0 JRNL AUTH Y.TAKAGI,N.KUWABARA,T.T.DANG,K.FURUKAWA,C.K.HO JRNL TITL CRYSTAL STRUCTURES OF THE RNA TRIPHOSPHATASE FROMTRYPANOSOMA JRNL TITL 2 CRUZIPROVIDE INSIGHTS INTO HOW IT RECOGNIZES THE 5'-END OF JRNL TITL 3 THE RNA SUBSTRATE. JRNL REF J.BIOL.CHEM. V. 295 9076 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32381506 JRNL DOI 10.1074/JBC.RA119.011811 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6500 - 4.3400 1.00 2834 148 0.1600 0.1914 REMARK 3 2 4.3400 - 3.4500 1.00 2740 149 0.1832 0.2135 REMARK 3 3 3.4500 - 3.0100 1.00 2727 141 0.2406 0.3011 REMARK 3 4 3.0100 - 2.7400 1.00 2725 107 0.2737 0.3337 REMARK 3 5 2.7400 - 2.5400 0.99 2707 136 0.2930 0.3666 REMARK 3 6 2.5400 - 2.3900 1.00 2705 126 0.3125 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.327 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1673 REMARK 3 ANGLE : 0.698 2264 REMARK 3 CHIRALITY : 0.040 250 REMARK 3 PLANARITY : 0.002 289 REMARK 3 DIHEDRAL : 8.619 996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0542 -41.2198 -20.9684 REMARK 3 T TENSOR REMARK 3 T11: 0.7262 T22: 0.6665 REMARK 3 T33: 0.3895 T12: 0.1109 REMARK 3 T13: -0.0129 T23: -0.0896 REMARK 3 L TENSOR REMARK 3 L11: 6.3613 L22: 3.7113 REMARK 3 L33: 4.9976 L12: -0.4670 REMARK 3 L13: -2.8012 L23: -0.6069 REMARK 3 S TENSOR REMARK 3 S11: 0.2839 S12: 0.6324 S13: -0.2969 REMARK 3 S21: -0.0760 S22: -0.3849 S23: -0.1550 REMARK 3 S31: 0.0687 S32: 0.2736 S33: -0.0720 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7109 -35.6322 -12.7202 REMARK 3 T TENSOR REMARK 3 T11: 0.4535 T22: 0.6920 REMARK 3 T33: 0.4420 T12: 0.0318 REMARK 3 T13: 0.0180 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 6.7091 L22: 0.2972 REMARK 3 L33: 1.3066 L12: 1.3237 REMARK 3 L13: 2.9456 L23: 0.5575 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -1.0041 S13: -0.1084 REMARK 3 S21: -0.0895 S22: -0.2426 S23: 0.1002 REMARK 3 S31: -0.5506 S32: -1.2923 S33: 0.1657 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3066 -28.0407 -0.3225 REMARK 3 T TENSOR REMARK 3 T11: 0.4158 T22: 0.4767 REMARK 3 T33: 0.5435 T12: -0.0317 REMARK 3 T13: 0.0869 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.9670 L22: 4.9739 REMARK 3 L33: 3.2628 L12: -1.5912 REMARK 3 L13: 1.1747 L23: -0.6608 REMARK 3 S TENSOR REMARK 3 S11: 0.1796 S12: -0.3380 S13: 0.3440 REMARK 3 S21: 0.0227 S22: -0.1223 S23: -0.2393 REMARK 3 S31: -0.1166 S32: 0.1181 S33: 0.0211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.4897 -22.8056 -0.4870 REMARK 3 T TENSOR REMARK 3 T11: 0.5130 T22: 0.3969 REMARK 3 T33: 0.5448 T12: 0.1213 REMARK 3 T13: 0.0992 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 2.5301 L22: 0.1188 REMARK 3 L33: 2.4903 L12: 0.0258 REMARK 3 L13: -0.2455 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: 0.3328 S12: 0.2006 S13: 0.6159 REMARK 3 S21: -0.1770 S22: -0.0785 S23: -0.0251 REMARK 3 S31: -0.5074 S32: -0.1918 S33: -0.1548 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2682 -37.1368 -7.5022 REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.4584 REMARK 3 T33: 0.4722 T12: 0.0309 REMARK 3 T13: 0.0479 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.0206 L22: 0.0292 REMARK 3 L33: 0.7740 L12: -0.3878 REMARK 3 L13: -0.2852 L23: -0.1890 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.2783 S13: -0.4427 REMARK 3 S21: 0.0190 S22: -0.0526 S23: 0.0642 REMARK 3 S31: 0.0297 S32: -0.0980 S33: 0.0571 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5872 -27.1669 0.4182 REMARK 3 T TENSOR REMARK 3 T11: 0.5042 T22: 0.4096 REMARK 3 T33: 0.3997 T12: 0.1046 REMARK 3 T13: 0.0136 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.2063 L22: 0.7116 REMARK 3 L33: 2.9209 L12: 0.9643 REMARK 3 L13: -1.1150 L23: -1.0845 REMARK 3 S TENSOR REMARK 3 S11: 0.4356 S12: 0.1313 S13: 0.1029 REMARK 3 S21: -0.1145 S22: -0.3380 S23: -0.1281 REMARK 3 S31: -0.2236 S32: -0.0498 S33: 0.0393 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3412 -24.7375 -6.0628 REMARK 3 T TENSOR REMARK 3 T11: 0.5850 T22: 0.4456 REMARK 3 T33: 0.6054 T12: 0.0500 REMARK 3 T13: -0.0255 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 3.6325 L22: 1.5092 REMARK 3 L33: 2.8611 L12: 0.4836 REMARK 3 L13: -3.1044 L23: -1.0438 REMARK 3 S TENSOR REMARK 3 S11: 0.4414 S12: 0.3637 S13: 0.6121 REMARK 3 S21: -0.3058 S22: 0.3999 S23: 0.3635 REMARK 3 S31: -0.3900 S32: -0.4544 S33: -0.8472 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1589 -29.6648 -10.5173 REMARK 3 T TENSOR REMARK 3 T11: 0.6423 T22: 0.5318 REMARK 3 T33: 0.5267 T12: 0.0284 REMARK 3 T13: -0.0674 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.2997 L22: 1.6834 REMARK 3 L33: 0.4683 L12: -0.3264 REMARK 3 L13: -0.4613 L23: -0.0952 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: 0.1063 S13: 0.0704 REMARK 3 S21: -0.3769 S22: -0.0332 S23: 0.3417 REMARK 3 S31: 0.5974 S32: -0.3732 S33: -0.2424 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2377 -30.1647 -15.3952 REMARK 3 T TENSOR REMARK 3 T11: 0.5034 T22: 0.5778 REMARK 3 T33: 0.5477 T12: 0.0708 REMARK 3 T13: 0.1460 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 4.8683 L22: 4.9638 REMARK 3 L33: 6.2474 L12: 1.2953 REMARK 3 L13: 2.2939 L23: 2.4620 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.4671 S13: 0.3579 REMARK 3 S21: -0.6146 S22: 0.2935 S23: -0.4114 REMARK 3 S31: -0.2093 S32: 0.7992 S33: -0.2867 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17359 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 49.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6L7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES-NAOH (PH 7.5), AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.77733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.88867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.88867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.77733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 THR A 242 REMARK 465 ASN A 243 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -74.35 -83.86 REMARK 500 THR A 130 -98.13 -118.51 REMARK 500 LEU A 240 49.77 -79.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E7R A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 DBREF 6L7X A 18 243 UNP Q4E2I1 Q4E2I1_TRYCC 18 243 SEQADV 6L7X GLY A 14 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7X PRO A 15 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7X GLY A 16 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7X SER A 17 UNP Q4E2I1 EXPRESSION TAG SEQADV 6L7X A UNP Q4E2I1 ASP 55 DELETION SEQADV 6L7X A UNP Q4E2I1 ALA 56 DELETION SEQADV 6L7X A UNP Q4E2I1 LEU 57 DELETION SEQADV 6L7X A UNP Q4E2I1 ARG 58 DELETION SEQADV 6L7X A UNP Q4E2I1 GLU 59 DELETION SEQADV 6L7X A UNP Q4E2I1 ASN 60 DELETION SEQADV 6L7X A UNP Q4E2I1 THR 61 DELETION SEQADV 6L7X A UNP Q4E2I1 SER 62 DELETION SEQADV 6L7X A UNP Q4E2I1 ASP 63 DELETION SEQADV 6L7X A UNP Q4E2I1 GLN 64 DELETION SEQADV 6L7X A UNP Q4E2I1 ASN 65 DELETION SEQADV 6L7X A UNP Q4E2I1 GLY 66 DELETION SEQADV 6L7X A UNP Q4E2I1 ALA 67 DELETION SEQADV 6L7X A UNP Q4E2I1 GLN 68 DELETION SEQADV 6L7X A UNP Q4E2I1 THR 69 DELETION SEQADV 6L7X A UNP Q4E2I1 ASN 70 DELETION SEQADV 6L7X A UNP Q4E2I1 GLY 71 DELETION SEQADV 6L7X A UNP Q4E2I1 LEU 72 DELETION SEQADV 6L7X A UNP Q4E2I1 ARG 73 DELETION SEQADV 6L7X A UNP Q4E2I1 ILE 74 DELETION SEQADV 6L7X A UNP Q4E2I1 VAL 75 DELETION SEQADV 6L7X ASN A 126 UNP Q4E2I1 ASP 126 ENGINEERED MUTATION SEQRES 1 A 209 GLY PRO GLY SER ASP ALA GLU GLN ARG ALA VAL ALA LYS SEQRES 2 A 209 ALA LEU PHE ASP ALA VAL ASN LYS HIS LEU SER ASN PRO SEQRES 3 A 209 PHE ILE GLU VAL GLU MET ARG LEU GLY GLN PHE LYS VAL SEQRES 4 A 209 GLU GLU ASP ALA ASN PHE THR ALA CYS VAL SER THR GLU SEQRES 5 A 209 ASP TYR GLU ARG ILE LYS THR TYR LEU MET THR GLU MET SEQRES 6 A 209 GLU ASN SER SER MET THR ARG SER VAL THR HIS ASP VAL SEQRES 7 A 209 SER LEU ARG GLY TRP ARG HIS THR TYR ALA THR ASP GLU SEQRES 8 A 209 ASN GLY ASN PRO THR ARG CYS VAL SER ILE VAL ARG LYS SEQRES 9 A 209 LYS ARG LEU PHE VAL LYS ASN ILE VAL VAL PRO LEU GLY SEQRES 10 A 209 ALA TYR ASN LEU ARG PHE ALA VAL SER THR GLU THR PRO SEQRES 11 A 209 GLY ASP LEU ARG PHE SER GLY ALA GLY PRO ARG ALA GLY SEQRES 12 A 209 HIS THR ARG LEU LYS ASP ARG LEU SER ILE THR ASP GLY SEQRES 13 A 209 MET PHE ARG TYR ASP MET THR GLN VAL THR GLU LYS GLY SEQRES 14 A 209 VAL LEU MET HIS GLU VAL GLU ILE GLU GLY VAL PHE SER SEQRES 15 A 209 SER HIS GLU LYS GLN LEU THR GLU SER TRP LEU GLU GLU SEQRES 16 A 209 LEU LEU ARG ARG ALA MET ARG LEU ALA THR LEU ARG THR SEQRES 17 A 209 ASN HET E7R A 301 16 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HETNAM E7R 1,3-DIMETHYL-7-PROPYL-PURINE-2,6-DIONE HETNAM SO4 SULFATE ION FORMUL 2 E7R C10 H14 N4 O2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *27(H2 O) HELIX 1 AA1 ASP A 18 ASN A 33 1 16 HELIX 2 AA2 LYS A 34 LEU A 36 5 3 HELIX 3 AA3 SER A 84 MET A 99 1 16 HELIX 4 AA4 ASP A 166 GLY A 173 5 8 HELIX 5 AA5 SER A 217 LEU A 222 1 6 HELIX 6 AA6 THR A 223 THR A 239 1 17 SHEET 1 AA110 PHE A 79 THR A 80 0 SHEET 2 AA110 ILE A 41 PHE A 50 -1 N GLN A 49 O THR A 80 SHEET 3 AA110 VAL A 204 GLY A 213 -1 O VAL A 209 N LEU A 47 SHEET 4 AA110 PHE A 192 GLU A 201 -1 N ASP A 195 O GLU A 210 SHEET 5 AA110 THR A 179 ASP A 189 -1 N ASP A 189 O PHE A 192 SHEET 6 AA110 SER A 103 LEU A 114 -1 N ASP A 111 O ARG A 180 SHEET 7 AA110 TRP A 117 THR A 123 -1 O HIS A 119 N VAL A 112 SHEET 8 AA110 PRO A 129 ILE A 146 -1 O ARG A 131 N ALA A 122 SHEET 9 AA110 ASN A 154 PRO A 164 -1 O VAL A 159 N PHE A 142 SHEET 10 AA110 ILE A 41 PHE A 50 -1 N GLU A 42 O SER A 160 SITE 1 AC1 6 LEU A 114 ARG A 115 TRP A 117 HIS A 119 SITE 2 AC1 6 ILE A 135 PHE A 169 SITE 1 AC2 3 ASN A 78 PHE A 79 ARG A 156 SITE 1 AC3 3 LYS A 51 LYS A 144 ASN A 145 SITE 1 AC4 4 LYS A 51 ASN A 78 ASN A 145 ARG A 156 SITE 1 AC5 5 ARG A 46 ASP A 111 ARG A 180 LYS A 182 SITE 2 AC5 5 HOH A 411 CRYST1 114.673 114.673 56.666 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008720 0.005035 0.000000 0.00000 SCALE2 0.000000 0.010070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017647 0.00000