HEADER DNA BINDING PROTEIN 06-NOV-19 6L8O TITLE CRYSTAL STRUCTURE OF THE K. LACTIS RAD5 (HG-DERIVATIVE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN RAD5; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS NRRL Y-1140; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 284590; SOURCE 5 STRAIN: NRRL Y-1140; SOURCE 6 GENE: RAD5, KLLA0F17479G; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING PROTEIN, DNA DAMAGE TOLERANCE, HELICASE, SNF2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR M.SHEN,S.XIANG REVDAT 4 27-MAR-24 6L8O 1 REMARK REVDAT 3 27-JAN-21 6L8O 1 JRNL REVDAT 2 20-JAN-21 6L8O 1 JRNL REVDAT 1 11-NOV-20 6L8O 0 JRNL AUTH M.SHEN,N.DHINGRA,Q.WANG,C.CHENG,S.ZHU,X.TIAN,J.YU,X.GONG, JRNL AUTH 2 X.LI,H.ZHANG,X.XU,L.ZHAI,M.XIE,Y.GAO,H.DENG,Y.HE,H.NIU, JRNL AUTH 3 X.ZHAO,S.XIANG JRNL TITL STRUCTURAL BASIS FOR THE MULTI-ACTIVITY FACTOR RAD5 IN JRNL TITL 2 REPLICATION STRESS TOLERANCE. JRNL REF NAT COMMUN V. 12 321 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33436623 JRNL DOI 10.1038/S41467-020-20538-W REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 31265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9090 - 9.6235 0.99 2212 129 0.1949 0.2237 REMARK 3 2 9.6235 - 7.6492 1.00 2214 122 0.1625 0.1766 REMARK 3 3 7.6492 - 6.6854 1.00 2186 159 0.1904 0.2477 REMARK 3 4 6.6854 - 6.0756 1.00 2188 146 0.2110 0.2864 REMARK 3 5 6.0756 - 5.6409 1.00 2199 147 0.1988 0.2507 REMARK 3 6 5.6409 - 5.3088 1.00 2203 152 0.1864 0.2645 REMARK 3 7 5.3088 - 5.0432 1.00 2199 123 0.1647 0.2020 REMARK 3 8 5.0432 - 4.8239 1.00 2174 172 0.1529 0.1768 REMARK 3 9 4.8239 - 4.6384 1.00 2197 143 0.1341 0.1693 REMARK 3 10 4.6384 - 4.4785 1.00 2196 135 0.1409 0.1622 REMARK 3 11 4.4785 - 4.3385 1.00 2222 123 0.1517 0.1839 REMARK 3 12 4.3385 - 4.2146 1.00 2223 147 0.1616 0.2195 REMARK 3 13 4.2146 - 4.1037 1.00 2179 143 0.1739 0.2325 REMARK 3 14 4.1037 - 4.0036 1.00 2150 140 0.1761 0.1871 REMARK 3 15 4.0036 - 3.9127 1.00 2241 119 0.1864 0.2030 REMARK 3 16 3.9127 - 3.8295 1.00 2199 146 0.2053 0.2553 REMARK 3 17 3.8295 - 3.7529 1.00 2201 131 0.2332 0.3072 REMARK 3 18 3.7529 - 3.6821 1.00 2208 111 0.2238 0.2507 REMARK 3 19 3.6821 - 3.6164 1.00 2209 151 0.2435 0.2962 REMARK 3 20 3.6164 - 3.5551 1.00 2190 159 0.2544 0.2647 REMARK 3 21 3.5551 - 3.4978 1.00 2178 152 0.2884 0.2963 REMARK 3 22 3.4978 - 3.4440 1.00 2232 132 0.3326 0.3376 REMARK 3 23 3.4440 - 3.3933 1.00 2151 152 0.3238 0.3655 REMARK 3 24 3.3933 - 3.3455 1.00 2190 153 0.3121 0.3620 REMARK 3 25 3.3455 - 3.3003 0.89 1993 97 0.3500 0.3702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6928 REMARK 3 ANGLE : 0.496 9346 REMARK 3 CHIRALITY : 0.041 1046 REMARK 3 PLANARITY : 0.003 1189 REMARK 3 DIHEDRAL : 9.447 4250 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 174:329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.3655 120.2220 84.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.9633 T22: 0.7443 REMARK 3 T33: 1.5950 T12: -0.0157 REMARK 3 T13: -0.1433 T23: 0.1548 REMARK 3 L TENSOR REMARK 3 L11: 7.6835 L22: 3.4142 REMARK 3 L33: 2.5063 L12: -0.2138 REMARK 3 L13: -1.3142 L23: -0.2336 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.3282 S13: 1.9154 REMARK 3 S21: -0.3634 S22: -0.1025 S23: -0.2029 REMARK 3 S31: -0.3193 S32: 0.2662 S33: -0.0917 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 330:361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0714 97.4154 90.3951 REMARK 3 T TENSOR REMARK 3 T11: 1.6491 T22: 2.1400 REMARK 3 T33: 2.4234 T12: 0.2157 REMARK 3 T13: 0.0963 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 3.2989 L22: 2.0254 REMARK 3 L33: 0.6765 L12: 2.2458 REMARK 3 L13: 1.6038 L23: 1.5853 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.8258 S13: -1.5704 REMARK 3 S21: -0.2291 S22: -0.4541 S23: 0.6600 REMARK 3 S31: 0.2604 S32: 0.0008 S33: -0.2594 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 362:729 OR RESID 1204:1204 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7639 98.8890 98.3918 REMARK 3 T TENSOR REMARK 3 T11: 0.6410 T22: 0.9005 REMARK 3 T33: 0.7292 T12: -0.0259 REMARK 3 T13: 0.0683 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 3.2252 L22: 1.6002 REMARK 3 L33: 1.9466 L12: -0.3852 REMARK 3 L13: 0.5072 L23: 0.1299 REMARK 3 S TENSOR REMARK 3 S11: 0.3158 S12: -0.5028 S13: 0.0624 REMARK 3 S21: 0.1061 S22: -0.0215 S23: -0.1701 REMARK 3 S31: 0.0424 S32: 0.1466 S33: -0.2582 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 730:795 OR RESID 936:1114 OR REMARK 3 RESID 1203:1203 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2704 61.5531 84.6642 REMARK 3 T TENSOR REMARK 3 T11: 0.6731 T22: 0.7722 REMARK 3 T33: 0.6306 T12: 0.0893 REMARK 3 T13: -0.0363 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.4402 L22: 5.9610 REMARK 3 L33: 2.2291 L12: 2.1605 REMARK 3 L13: -1.0251 L23: -1.0970 REMARK 3 S TENSOR REMARK 3 S11: -0.1510 S12: 0.2740 S13: -0.1992 REMARK 3 S21: -0.0071 S22: 0.1061 S23: -0.1206 REMARK 3 S31: 0.2334 S32: -0.1816 S33: 0.0753 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 827:935 OR RESID 1201:1202 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3003 89.4229 59.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.9906 T22: 1.1523 REMARK 3 T33: 0.9977 T12: -0.0179 REMARK 3 T13: -0.0065 T23: 0.2595 REMARK 3 L TENSOR REMARK 3 L11: 3.5213 L22: 6.8253 REMARK 3 L33: 5.4927 L12: 2.1085 REMARK 3 L13: 1.6065 L23: 3.3766 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.2052 S13: -0.0240 REMARK 3 S21: -0.3778 S22: 0.1062 S23: 0.4322 REMARK 3 S31: 0.4173 S32: -0.4693 S33: -0.1547 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 6L8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31355 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 56.10 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 50.70 REMARK 200 R MERGE FOR SHELL (I) : 3.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 0.9M AMMONIUM REMARK 280 CITRATE TRIBASIC PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.69600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.84800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 131.69600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.84800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.69600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.84800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 131.69600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.84800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HG HG A1203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 163 REMARK 465 SER A 164 REMARK 465 PRO A 165 REMARK 465 MET A 166 REMARK 465 SER A 167 REMARK 465 SER A 168 REMARK 465 ASP A 169 REMARK 465 LYS A 170 REMARK 465 GLY A 171 REMARK 465 ARG A 172 REMARK 465 ASN A 173 REMARK 465 VAL A 208 REMARK 465 PRO A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 LEU A 212 REMARK 465 PRO A 213 REMARK 465 LEU A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 SER A 217 REMARK 465 LEU A 218 REMARK 465 GLN A 219 REMARK 465 HIS A 220 REMARK 465 GLN A 221 REMARK 465 HIS A 222 REMARK 465 CYS A 223 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 ILE A 300 REMARK 465 LEU A 301 REMARK 465 ASN A 302 REMARK 465 LYS A 303 REMARK 465 SER A 304 REMARK 465 PHE A 305 REMARK 465 ILE A 306 REMARK 465 ASN A 307 REMARK 465 ASP A 308 REMARK 465 ALA A 421 REMARK 465 ALA A 422 REMARK 465 GLU A 423 REMARK 465 VAL A 424 REMARK 465 SER A 425 REMARK 465 ILE A 426 REMARK 465 ASP A 427 REMARK 465 GLY A 428 REMARK 465 ASN A 429 REMARK 465 SER A 430 REMARK 465 LYS A 445 REMARK 465 GLN A 446 REMARK 465 GLY A 447 REMARK 465 THR A 448 REMARK 465 PRO A 449 REMARK 465 ASN A 450 REMARK 465 HIS A 451 REMARK 465 GLU A 452 REMARK 465 ASP A 453 REMARK 465 LYS A 515 REMARK 465 LYS A 516 REMARK 465 PRO A 517 REMARK 465 SER A 518 REMARK 465 MET A 519 REMARK 465 LYS A 520 REMARK 465 GLU A 521 REMARK 465 MET A 522 REMARK 465 SER A 523 REMARK 465 SER A 524 REMARK 465 GLN A 525 REMARK 465 VAL A 526 REMARK 465 ASP A 527 REMARK 465 SER A 528 REMARK 465 SER A 529 REMARK 465 PRO A 530 REMARK 465 LEU A 531 REMARK 465 ARG A 532 REMARK 465 HIS A 533 REMARK 465 SER A 534 REMARK 465 GLN A 535 REMARK 465 HIS A 536 REMARK 465 LYS A 537 REMARK 465 HIS A 538 REMARK 465 LYS A 796 REMARK 465 THR A 797 REMARK 465 PRO A 798 REMARK 465 ASP A 799 REMARK 465 LEU A 800 REMARK 465 GLY A 801 REMARK 465 ASP A 802 REMARK 465 PRO A 803 REMARK 465 ASP A 804 REMARK 465 LEU A 805 REMARK 465 GLU A 806 REMARK 465 ASP A 807 REMARK 465 LEU A 808 REMARK 465 GLU A 809 REMARK 465 ASN A 810 REMARK 465 SER A 811 REMARK 465 THR A 812 REMARK 465 GLN A 813 REMARK 465 ASN A 814 REMARK 465 ILE A 815 REMARK 465 SER A 816 REMARK 465 SER A 817 REMARK 465 ILE A 818 REMARK 465 LEU A 819 REMARK 465 MET A 820 REMARK 465 PRO A 821 REMARK 465 LYS A 822 REMARK 465 ASN A 823 REMARK 465 ILE A 824 REMARK 465 LYS A 825 REMARK 465 SER A 826 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 255 52.15 -100.62 REMARK 500 VAL A 293 49.79 39.46 REMARK 500 GLU A 341 -152.64 -95.68 REMARK 500 THR A 350 -154.73 -144.75 REMARK 500 GLN A 355 70.08 52.80 REMARK 500 SER A 375 55.92 -99.68 REMARK 500 ALA A 376 -167.08 -79.30 REMARK 500 SER A 418 71.41 -101.27 REMARK 500 ASN A 432 76.46 52.60 REMARK 500 PRO A 551 154.24 -49.78 REMARK 500 ASP A 583 78.15 -119.11 REMARK 500 ASN A 592 34.76 -97.33 REMARK 500 LEU A 616 -20.09 65.33 REMARK 500 HIS A 630 9.26 -66.70 REMARK 500 ILE A 660 -68.33 -95.13 REMARK 500 VAL A 688 -53.81 -126.92 REMARK 500 ASP A1097 -179.82 -68.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1201 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 858 SG REMARK 620 2 CYS A 861 SG 86.6 REMARK 620 3 CYS A 882 SG 99.8 106.9 REMARK 620 4 CYS A 885 SG 111.0 101.5 138.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1202 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 877 SG REMARK 620 2 HIS A 879 ND1 80.1 REMARK 620 3 CYS A 902 SG 107.6 119.1 REMARK 620 4 CYS A 905 SG 107.3 112.0 121.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 1204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6L8N RELATED DB: PDB REMARK 900 6L8N CONTAINS THE SAME PROTEIN WITHOUT HG DBREF 6L8O A 163 1114 UNP Q6CJM4 RAD5_KLULA 163 1114 SEQRES 1 A 952 GLU SER PRO MET SER SER ASP LYS GLY ARG ASN ARG TRP SEQRES 2 A 952 SER ARG TYR ILE GLY SER ILE HIS THR MET GLY PHE ALA SEQRES 3 A 952 THR ARG PRO THR VAL LYS PRO VAL PRO ILE GLY SER ARG SEQRES 4 A 952 LEU GLY PHE LYS LYS SER VAL PRO LYS ASP LEU PRO LEU SEQRES 5 A 952 GLY LYS SER LEU GLN HIS GLN HIS CYS SER HIS LEU VAL SEQRES 6 A 952 ARG LEU ILE ASP THR SER GLN ASP ARG GLU LEU GLY ARG SEQRES 7 A 952 MET PRO GLU ASP VAL ALA ARG ILE LEU TYR PRO LEU LEU SEQRES 8 A 952 ASP TYR SER GLU GLN VAL SER LEU GLU PRO TYR LEU LEU SEQRES 9 A 952 ILE ASN ASN GLY LYS ARG PHE SER VAL GLY ASP ASN ILE SEQRES 10 A 952 TYR ILE ARG ILE ASP CYS TYR LEU THR SER GLN ALA PHE SEQRES 11 A 952 VAL ARG ILE GLU GLY GLY SER ILE LEU ASN LYS SER PHE SEQRES 12 A 952 ILE ASN ASP HIS GLY MET ASP THR ARG GLN LEU HIS ARG SEQRES 13 A 952 ALA GLY ALA ILE MET ALA LEU PHE ASP ALA ILE ASN ILE SEQRES 14 A 952 GLN PRO VAL TYR GLY ASP THR LYS ASN GLU MET ILE PRO SEQRES 15 A 952 ASN TYR GLN GLU ASN THR VAL SER SER SER GLN PHE GLN SEQRES 16 A 952 ASP GLU ALA LEU ASN ILE ASN GLN LEU LYS SER PHE TYR SEQRES 17 A 952 ARG ILE THR GLN SER ALA ALA SER LEU GLN ASN LEU PRO SEQRES 18 A 952 GLU THR THR PRO ASP GLU SER LEU PHE LYS LEU GLN LEU SEQRES 19 A 952 ARG ARG TYR GLN LYS GLN SER LEU SER TRP MET LEU LYS SEQRES 20 A 952 ARG GLU TYR GLU TYR SER HIS LEU SER GLU LYS ALA ALA SEQRES 21 A 952 GLU VAL SER ILE ASP GLY ASN SER MET ASN PRO LEU TRP SEQRES 22 A 952 LYS LYS PHE ARG TRP PRO SER ASN SER LYS GLN GLY THR SEQRES 23 A 952 PRO ASN HIS GLU ASP ASP CYS PHE PHE TYR ALA ASN LEU SEQRES 24 A 952 TYR THR GLY GLU PHE SER ILE GLU LYS PRO VAL ILE LYS SEQRES 25 A 952 THR ILE ILE ASN GLY GLY ILE LEU ALA ASP GLU MET GLY SEQRES 26 A 952 LEU GLY LYS THR ILE SER ALA LEU ALA LEU ILE CYS THR SEQRES 27 A 952 ALA SER TYR ASP GLU ALA HIS GLU LYS LYS ILE GLU SER SEQRES 28 A 952 THR LYS LYS PRO SER MET LYS GLU MET SER SER GLN VAL SEQRES 29 A 952 ASP SER SER PRO LEU ARG HIS SER GLN HIS LYS HIS ASP SEQRES 30 A 952 THR TYR ALA TYR ARG THR THR LEU ILE VAL VAL PRO MET SEQRES 31 A 952 SER LEU LEU ASN GLN TRP GLN SER GLU PHE GLU LYS ALA SEQRES 32 A 952 ASN LYS ASP LEU LYS LYS ARG CYS GLU ILE TYR TYR GLY SEQRES 33 A 952 ASN ASN ILE LYS ASP LEU ARG ALA TYR VAL LEU GLY PRO SEQRES 34 A 952 ASN ALA PRO SER VAL ILE ILE THR THR TYR GLY ILE ILE SEQRES 35 A 952 GLN SER GLU TYR GLY ARG THR SER THR SER GLY LEU PHE SEQRES 36 A 952 ASN VAL VAL PHE PHE ARG ILE ILE LEU ASP GLU GLY HIS SEQRES 37 A 952 THR ILE ARG ASN ARG SER THR ARG THR SER LYS ALA VAL SEQRES 38 A 952 ILE ALA LEU ARG SER SER ARG LYS TRP ILE LEU THR GLY SEQRES 39 A 952 THR PRO ILE ILE ASN ARG LEU ASP ASP LEU PHE SER LEU SEQRES 40 A 952 VAL GLN PHE LEU ASN LEU GLU PRO TRP SER HIS ILE ASN SEQRES 41 A 952 TYR TRP LYS ARG TYR VAL SER VAL PRO PHE GLU LYS GLY SEQRES 42 A 952 ASN TYR ALA GLN ALA PHE ASP VAL ILE ASN ALA VAL LEU SEQRES 43 A 952 GLU PRO VAL LEU LEU ARG ARG THR LYS ASN MET LYS ASP SEQRES 44 A 952 VAL ASP GLY LYS PRO LEU VAL SER LEU PRO PRO LYS GLU SEQRES 45 A 952 VAL ILE VAL GLU LYS LEU GLN LEU SER SER SER GLU LYS SEQRES 46 A 952 ARG VAL TYR GLN SER MET LEU GLU ASP ALA GLU ASN SER SEQRES 47 A 952 VAL LYS GLU GLY LEU ALA LYS GLY ASP LEU LEU LYS ASN SEQRES 48 A 952 TYR THR ASN ILE LEU VAL HIS ILE LEU ARG LEU ARG GLN SEQRES 49 A 952 VAL CYS CYS HIS LEU ASP LEU LEU LYS LYS THR PRO ASP SEQRES 50 A 952 LEU GLY ASP PRO ASP LEU GLU ASP LEU GLU ASN SER THR SEQRES 51 A 952 GLN ASN ILE SER SER ILE LEU MET PRO LYS ASN ILE LYS SEQRES 52 A 952 SER PRO LYS SER SER ILE SER GLN ASP LYS LEU ASP ALA SEQRES 53 A 952 LEU SER ALA ASN PHE ARG ASP ILE HIS SER ALA SER GLU SEQRES 54 A 952 GLN LEU PRO SER PHE GLU CYS ALA ILE CYS THR THR GLU SEQRES 55 A 952 CYS ILE GLU PRO LEU SER ALA VAL SER ILE THR GLU CYS SEQRES 56 A 952 LEU HIS THR PHE CYS GLU PRO CYS LEU ALA GLU TYR ILE SEQRES 57 A 952 GLU PHE GLN GLN ASN LYS LYS LEU SER ILE ASN CYS PRO SEQRES 58 A 952 TYR CYS ARG MET PRO ILE SER GLU ALA ASN VAL LEU LYS SEQRES 59 A 952 LEU LYS GLU PRO ILE ASP ALA GLU ARG GLY TYR GLU LEU SEQRES 60 A 952 ILE SER PHE HIS SER HIS PHE GLN SER THR LYS ILE LYS SEQRES 61 A 952 ALA LEU LEU ARG HIS LEU LYS GLN ILE GLN GLU THR SER SEQRES 62 A 952 PRO GLY GLU GLN ILE ILE VAL PHE SER GLN PHE SER SER SEQRES 63 A 952 PHE LEU ASP ILE LEU GLU ILE GLU LEU ARG SER HIS LEU SEQRES 64 A 952 PRO ARG ASP GLN VAL ILE ILE TYR LYS PHE ASP GLY ARG SEQRES 65 A 952 LEU ASP MET LYS GLU ARG THR ARG ILE LEU GLU GLN PHE SEQRES 66 A 952 HIS ASP LYS ASP LEU SER CYS ILE LYS LEU LEU LEU LEU SEQRES 67 A 952 SER LEU LYS THR GLY GLY VAL GLY LEU ASN LEU THR CYS SEQRES 68 A 952 ALA SER ARG ALA PHE MET MET ASP PRO TRP TRP SER PRO SEQRES 69 A 952 GLY MET GLU ASP GLN ALA ILE ASP ARG ILE HIS ARG ILE SEQRES 70 A 952 GLY GLN GLN GLN THR VAL LYS VAL VAL ARG PHE ILE ILE SEQRES 71 A 952 ASP ASN SER VAL GLU GLU LYS MET LEU ARG ILE GLN GLU SEQRES 72 A 952 ARG LYS ARG MET LEU GLY ASP ILE VAL GLU GLY ASP GLU SEQRES 73 A 952 ALA GLU ARG ARG GLN LYS ARG ILE GLU GLU ILE GLN MET SEQRES 74 A 952 LEU PHE GLN HET HG A1201 1 HET HG A1202 1 HET HG A1203 1 HET TRS A1204 8 HETNAM HG MERCURY (II) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 HG 3(HG 2+) FORMUL 5 TRS C4 H12 N O3 1+ HELIX 1 AA1 PRO A 242 LEU A 253 1 12 HELIX 2 AA2 ASP A 254 SER A 256 5 3 HELIX 3 AA3 MET A 311 ASN A 330 1 20 HELIX 4 AA4 ASN A 362 GLN A 374 1 13 HELIX 5 AA5 ARG A 397 GLU A 411 1 15 HELIX 6 AA6 GLU A 413 LEU A 417 5 5 HELIX 7 AA7 GLY A 489 ALA A 501 1 13 HELIX 8 AA8 ASP A 504 THR A 514 1 11 HELIX 9 AA9 PRO A 551 SER A 553 5 3 HELIX 10 AB1 LEU A 554 ASN A 566 1 13 HELIX 11 AB2 ASP A 583 GLY A 590 1 8 HELIX 12 AB3 TYR A 601 ARG A 610 1 10 HELIX 13 AB4 GLY A 629 ASN A 634 5 6 HELIX 14 AB5 THR A 637 LEU A 646 1 10 HELIX 15 AB6 ASP A 664 ASN A 674 1 11 HELIX 16 AB7 HIS A 680 VAL A 688 1 9 HELIX 17 AB8 VAL A 688 LYS A 694 1 7 HELIX 18 AB9 ASN A 696 GLU A 709 1 14 HELIX 19 AC1 SER A 743 LYS A 767 1 25 HELIX 20 AC2 GLY A 768 LYS A 772 5 5 HELIX 21 AC3 ASN A 773 HIS A 790 1 18 HELIX 22 AC4 LEU A 791 LEU A 794 5 4 HELIX 23 AC5 SER A 832 HIS A 847 1 16 HELIX 24 AC6 PRO A 868 SER A 870 5 3 HELIX 25 AC7 GLU A 883 ASN A 895 1 13 HELIX 26 AC8 SER A 910 ASN A 913 5 4 HELIX 27 AC9 SER A 938 SER A 955 1 18 HELIX 28 AD1 PHE A 966 LEU A 981 1 16 HELIX 29 AD2 ASP A 996 HIS A 1008 1 13 HELIX 30 AD3 SER A 1045 ARG A 1055 1 11 HELIX 31 AD4 SER A 1075 GLY A 1091 1 17 HELIX 32 AD5 ASP A 1097 GLN A 1114 1 18 SHEET 1 AA1 6 GLY A 203 LYS A 205 0 SHEET 2 AA1 6 ARG A 228 ILE A 230 -1 O ILE A 230 N GLY A 203 SHEET 3 AA1 6 GLU A 237 ARG A 240 -1 O GLY A 239 N LEU A 229 SHEET 4 AA1 6 SER A 176 ALA A 188 -1 N PHE A 187 O ARG A 240 SHEET 5 AA1 6 ASN A 278 THR A 288 -1 O LEU A 287 N ARG A 177 SHEET 6 AA1 6 VAL A 259 LEU A 265 -1 N GLU A 262 O ASP A 284 SHEET 1 AA2 3 LYS A 436 ARG A 439 0 SHEET 2 AA2 3 PHE A 456 ALA A 459 -1 O PHE A 457 N PHE A 438 SHEET 3 AA2 3 PHE A 466 SER A 467 -1 O SER A 467 N TYR A 458 SHEET 1 AA3 7 CYS A 573 ILE A 575 0 SHEET 2 AA3 7 VAL A 596 THR A 600 1 O ILE A 598 N GLU A 574 SHEET 3 AA3 7 THR A 546 VAL A 550 1 N ILE A 548 O ILE A 597 SHEET 4 AA3 7 PHE A 621 ASP A 627 1 O ASP A 627 N VAL A 549 SHEET 5 AA3 7 SER A 648 LEU A 654 1 O LEU A 654 N LEU A 626 SHEET 6 AA3 7 GLY A 479 ASP A 484 1 N LEU A 482 O ILE A 653 SHEET 7 AA3 7 LEU A 712 ARG A 715 1 O LEU A 713 N ILE A 481 SHEET 1 AA4 6 LYS A 733 LEU A 740 0 SHEET 2 AA4 6 VAL A1065 ILE A1072 1 O VAL A1067 N GLU A 734 SHEET 3 AA4 6 ALA A1034 MET A1039 1 N MET A1039 O VAL A1068 SHEET 4 AA4 6 GLN A 959 SER A 964 1 N PHE A 963 O PHE A1038 SHEET 5 AA4 6 ILE A1015 SER A1021 1 O LYS A1016 N ILE A 960 SHEET 6 AA4 6 VAL A 986 LYS A 990 1 N TYR A 989 O LEU A1019 SHEET 1 AA5 2 VAL A 872 ILE A 874 0 SHEET 2 AA5 2 THR A 880 CYS A 882 -1 O PHE A 881 N SER A 873 SHEET 1 AA6 2 LEU A 915 LEU A 917 0 SHEET 2 AA6 2 LEU A 929 SER A 931 -1 O ILE A 930 N LYS A 916 LINK SG CYS A 858 HG HG A1201 1555 1555 2.66 LINK SG CYS A 861 HG HG A1201 1555 1555 2.63 LINK SG CYS A 877 HG HG A1202 1555 1555 2.57 LINK ND1 HIS A 879 HG HG A1202 1555 1555 2.30 LINK SG CYS A 882 HG HG A1201 1555 1555 2.77 LINK SG CYS A 885 HG HG A1201 1555 1555 2.68 LINK SG CYS A 902 HG HG A1202 1555 1555 2.63 LINK SG CYS A 905 HG HG A1202 1555 1555 2.64 CISPEP 1 GLU A 676 PRO A 677 0 -2.31 CISPEP 2 GLU A 867 PRO A 868 0 -3.62 CISPEP 3 GLU A 919 PRO A 920 0 -0.52 SITE 1 AC1 4 CYS A 858 CYS A 861 CYS A 882 CYS A 885 SITE 1 AC2 4 CYS A 877 HIS A 879 CYS A 902 CYS A 905 SITE 1 AC3 5 MET A 486 GLY A 487 GLY A 489 LYS A 490 SITE 2 AC3 5 THR A 491 CRYST1 187.635 187.635 197.544 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005329 0.003077 0.000000 0.00000 SCALE2 0.000000 0.006154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005062 0.00000