HEADER IMMUNOSUPPRESSANT 07-NOV-19 6L8R TITLE MEMBRANE-BOUND PD-L1-CD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 1 LIGAND 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HPD-L1,B7 HOMOLOG 1,B7-H1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD274, B7H1, PDCD1L1, PDCD1LG1, PDL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PD-L1, MEMBRANE-BOUND, CYTOPLASMIC DOMAIN, STABILITY, KEYWDS 2 IMMUNOSUPPRESSANT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.MAORONG,Y.CAO,W.BIN,O.BO REVDAT 5 15-MAY-24 6L8R 1 REMARK REVDAT 4 14-JUN-23 6L8R 1 REMARK REVDAT 3 24-NOV-21 6L8R 1 JRNL REVDAT 2 12-MAY-21 6L8R 1 AUTHOR REVDAT 1 11-NOV-20 6L8R 0 JRNL AUTH M.WEN,Y.CAO,B.WU,T.XIAO,R.CAO,Q.WANG,X.LIU,H.XUE,Y.YU,J.LIN, JRNL AUTH 2 C.XU,J.XU,B.OUYANG JRNL TITL PD-L1 DEGRADATION IS REGULATED BY ELECTROSTATIC MEMBRANE JRNL TITL 2 ASSOCIATION OF ITS CYTOPLASMIC DOMAIN. JRNL REF NAT COMMUN V. 12 5106 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34429434 JRNL DOI 10.1038/S41467-021-25416-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300013973. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 0.5 MM 15N_13C_2H PD-L1-CD, 60 REMARK 210 MM DMPG, 85 MM DHPC, 90% H2O/10% REMARK 210 D2O; 0.5 MM 15N_13C PD-L1-CD, 60 REMARK 210 MM 2H DMPG, 85 MM 2H DHPC, 90% REMARK 210 H2O/10% D2O; 0.5 MM 15N_2H PD-L1- REMARK 210 CD, 60 MM POPG, 85 MM 2H DHPC, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HNCACO; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-13C HSQC; 3D 1H- REMARK 210 15N NOESY FOR LIPID NOE; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DD2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.5.5, NMRPIPE, SPARKY, REMARK 210 CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 263 172.70 -50.12 REMARK 500 1 MET A 267 -150.91 -119.78 REMARK 500 1 ASP A 268 91.58 -61.91 REMARK 500 1 HIS A 286 101.73 -59.99 REMARK 500 2 ARG A 260 -169.30 -58.24 REMARK 500 2 LYS A 263 178.53 -53.28 REMARK 500 2 MET A 267 -151.88 -113.57 REMARK 500 2 ASP A 268 89.12 -66.64 REMARK 500 2 ASN A 278 -61.87 -124.65 REMARK 500 2 SER A 279 128.04 -173.87 REMARK 500 3 PRO A 259 89.90 -58.92 REMARK 500 3 ARG A 260 -165.29 -78.61 REMARK 500 3 LYS A 263 177.70 -52.89 REMARK 500 3 MET A 267 -152.89 -122.80 REMARK 500 3 ASP A 268 90.84 -62.57 REMARK 500 3 ASN A 278 -62.67 -127.15 REMARK 500 3 SER A 279 115.94 62.10 REMARK 500 3 ASP A 284 177.76 -55.21 REMARK 500 3 THR A 285 83.29 17.68 REMARK 500 4 ARG A 260 -140.11 -64.72 REMARK 500 4 LYS A 263 157.22 -48.70 REMARK 500 4 MET A 267 -151.01 -128.11 REMARK 500 4 ASP A 268 85.15 -67.86 REMARK 500 5 ARG A 260 -167.77 -64.68 REMARK 500 5 LYS A 263 -174.26 -55.74 REMARK 500 5 MET A 267 -150.34 -106.92 REMARK 500 5 ASP A 268 93.29 -60.13 REMARK 500 5 ASP A 276 47.60 -100.06 REMARK 500 5 SER A 279 115.36 63.56 REMARK 500 5 ASP A 284 -177.21 -59.48 REMARK 500 5 THR A 285 -147.19 19.17 REMARK 500 6 ARG A 260 -158.65 40.81 REMARK 500 6 LYS A 263 171.09 -49.62 REMARK 500 6 MET A 267 -150.76 -112.65 REMARK 500 6 ASP A 268 85.01 -66.83 REMARK 500 6 ILE A 274 104.41 -45.17 REMARK 500 6 ASP A 276 89.59 -150.26 REMARK 500 6 THR A 285 -177.74 -66.97 REMARK 500 7 ARG A 260 -164.42 -64.89 REMARK 500 7 LYS A 263 -178.63 -54.40 REMARK 500 7 MET A 267 -154.61 -126.99 REMARK 500 7 ASP A 268 87.01 -67.55 REMARK 500 7 ASN A 278 -60.48 -127.02 REMARK 500 7 SER A 279 93.30 55.63 REMARK 500 7 ASP A 284 175.55 57.89 REMARK 500 7 THR A 285 78.96 17.40 REMARK 500 8 ARG A 260 -170.41 -57.45 REMARK 500 8 ARG A 262 -167.97 -110.18 REMARK 500 8 LYS A 263 -176.73 -55.70 REMARK 500 8 ARG A 265 -178.82 -66.48 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36293 RELATED DB: BMRB REMARK 900 MEMBRANE-BOUND PD-L1-CD DBREF 6L8R A 260 290 UNP Q9NZQ7 PD1L1_HUMAN 260 290 SEQADV 6L8R GLY A 258 UNP Q9NZQ7 EXPRESSION TAG SEQADV 6L8R PRO A 259 UNP Q9NZQ7 EXPRESSION TAG SEQRES 1 A 33 GLY PRO ARG LEU ARG LYS GLY ARG MET MET ASP VAL LYS SEQRES 2 A 33 LYS CYS GLY ILE GLN ASP THR ASN SER LYS LYS GLN SER SEQRES 3 A 33 ASP THR HIS LEU GLU GLU THR CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1