HEADER APOPTOSIS 07-NOV-19 6L8V TITLE MEMBRANE-BOUND BAX HELIX2-HELIX5 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BAX; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCL-2-LIKE PROTEIN 4,BCL2-L-4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAX, BCL2L4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BAX, MEMBRANE-BOUND, STABILITY, CORE-DOMAIN, DIMER, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR B.OUYANG,F.LV REVDAT 3 14-JUN-23 6L8V 1 REMARK REVDAT 2 24-NOV-21 6L8V 1 AUTHOR JRNL REVDAT 1 11-NOV-20 6L8V 0 JRNL AUTH F.LV,F.QI,Z.ZHANG,M.WEN,J.KALE,A.PIAI,L.DU,S.WANG,L.ZHOU, JRNL AUTH 2 Y.YANG,B.WU,Z.LIU,J.DEL ROSARIO,J.POGMORE,J.J.CHOU, JRNL AUTH 3 D.W.ANDREWS,J.LIN,B.OUYANG JRNL TITL AN AMPHIPATHIC BAX CORE DIMER FORMS PART OF THE APOPTOTIC JRNL TITL 2 PORE WALL IN THE MITOCHONDRIAL MEMBRANE. JRNL REF EMBO J. V. 40 06438 2021 JRNL REFN ESSN 1460-2075 JRNL PMID 34101209 JRNL DOI 10.15252/EMBJ.2020106438 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300013940. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM U-98% 15N;U-98% 13C;U-98% REMARK 210 2H HUMAN BAX CORE DOMAIN, 100 MM REMARK 210 DMPC, 140 MM DHPC, 10 MM MES, REMARK 210 100 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 0.6 MM U-98% 15N;U-98% REMARK 210 13C BAX A_2_A_5, 100 MM [U-2H] REMARK 210 DMPC, 160 MM [U-2H] DHPC, 10 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 90% REMARK 210 H2O/10% D2O; 0.4 MM U-98% 15N;U- REMARK 210 2H BAX A_2_A_5, 120 MM [U-2H] REMARK 210 DMPC, 200 MM [U-2H] DHPC, 10 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 90% REMARK 210 H2O/10% D2O; 0.4 MM U-98% 13C REMARK 210 BAX A_2_A_5, 120 MM [U-2H] DMPC, REMARK 210 200 MM [U-2H] DHPC, 10 MM MES, REMARK 210 100 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 0.6 MM U-98% 15N;U-2H REMARK 210 BAX A_2_A_5, 100 MM DMPC, 160 MM REMARK 210 [U-2H] DHPC, 10 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 0.4 MM U-98% 15N;U-15% 13C BAX REMARK 210 A_2_A_5, 80 MM DMPC, 140 MM DHPC, REMARK 210 10 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TROSY-HSQC; TROSY-HNCA; TROSY REMARK 210 -HNCOCA; TROSY-HNCACO; TROSY- REMARK 210 HNCACB; 3D 15N NOE-TROSY-HSQC; REMARK 210 3D 13C NOE-HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DD2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, X-PLOR NIH, XEASY, REMARK 210 TALOS, CCPNMR ANALYSIS, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 52 -34.40 -151.55 REMARK 500 1 ASP A 53 72.63 -115.50 REMARK 500 1 ASN A 73 83.86 -67.62 REMARK 500 1 ASP A 86 80.53 -68.25 REMARK 500 1 SER A 87 90.60 57.48 REMARK 500 1 PHE A 105 81.80 -154.97 REMARK 500 1 SER B 51 114.93 -160.10 REMARK 500 1 ASP B 53 75.58 -116.60 REMARK 500 1 ASP B 84 133.86 -31.98 REMARK 500 1 SER B 87 56.44 -172.22 REMARK 500 1 PHE B 105 68.58 -151.72 REMARK 500 2 SER A 51 96.35 51.95 REMARK 500 2 MET A 52 -63.55 -159.96 REMARK 500 2 ASP A 53 60.26 -112.77 REMARK 500 2 VAL A 83 31.65 -69.15 REMARK 500 2 ASP A 84 170.23 56.59 REMARK 500 2 ASP A 86 173.79 -55.57 REMARK 500 2 SER A 87 107.56 -53.02 REMARK 500 2 PHE A 105 90.22 -167.64 REMARK 500 2 THR A 127 51.87 -98.90 REMARK 500 2 MET B 52 -65.72 -153.00 REMARK 500 2 ASP B 53 63.61 -109.12 REMARK 500 2 ASP B 86 85.69 -66.93 REMARK 500 2 SER B 87 73.38 63.54 REMARK 500 3 SER A 51 -154.04 62.29 REMARK 500 3 MET A 52 -66.94 73.54 REMARK 500 3 ASP A 53 59.85 -106.73 REMARK 500 3 THR A 127 40.07 31.73 REMARK 500 3 SER B 51 136.54 64.59 REMARK 500 3 MET B 52 -60.90 -169.81 REMARK 500 3 ASP B 53 62.08 -110.85 REMARK 500 3 ASP B 84 157.90 -47.41 REMARK 500 3 ASP B 86 95.42 -56.32 REMARK 500 3 SER B 87 82.99 57.61 REMARK 500 3 PHE B 105 119.68 -172.58 REMARK 500 4 SER A 51 -30.99 -171.67 REMARK 500 4 MET A 52 -61.95 74.01 REMARK 500 4 ASP A 53 54.44 -93.97 REMARK 500 4 ASP A 84 154.80 60.65 REMARK 500 4 PHE A 105 92.66 -174.67 REMARK 500 4 MET B 52 -73.97 -171.94 REMARK 500 4 ASP B 53 63.38 -106.53 REMARK 500 4 ASP B 84 166.79 -47.77 REMARK 500 4 ASP B 86 91.07 -62.43 REMARK 500 4 SER B 87 78.21 51.38 REMARK 500 4 PHE B 105 114.89 -178.84 REMARK 500 4 THR B 127 73.31 -162.50 REMARK 500 5 MET A 52 -60.89 -166.42 REMARK 500 5 ASP A 53 61.34 -107.30 REMARK 500 5 ASN A 73 95.79 -63.44 REMARK 500 REMARK 500 THIS ENTRY HAS 174 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36294 RELATED DB: BMRB REMARK 900 MEMBRANE-BOUND BAX HELIX2-HELIX5 DOMAIN DBREF 6L8V A 53 128 UNP Q07812 BAX_HUMAN 53 128 DBREF 6L8V B 53 128 UNP Q07812 BAX_HUMAN 53 128 SEQADV 6L8V GLY A 48 UNP Q07812 EXPRESSION TAG SEQADV 6L8V PRO A 49 UNP Q07812 EXPRESSION TAG SEQADV 6L8V GLY A 50 UNP Q07812 EXPRESSION TAG SEQADV 6L8V SER A 51 UNP Q07812 EXPRESSION TAG SEQADV 6L8V MET A 52 UNP Q07812 EXPRESSION TAG SEQADV 6L8V SER A 62 UNP Q07812 CYS 62 ENGINEERED MUTATION SEQADV 6L8V SER A 126 UNP Q07812 CYS 126 ENGINEERED MUTATION SEQADV 6L8V GLY B 48 UNP Q07812 EXPRESSION TAG SEQADV 6L8V PRO B 49 UNP Q07812 EXPRESSION TAG SEQADV 6L8V GLY B 50 UNP Q07812 EXPRESSION TAG SEQADV 6L8V SER B 51 UNP Q07812 EXPRESSION TAG SEQADV 6L8V MET B 52 UNP Q07812 EXPRESSION TAG SEQADV 6L8V SER B 62 UNP Q07812 CYS 62 ENGINEERED MUTATION SEQADV 6L8V SER B 126 UNP Q07812 CYS 126 ENGINEERED MUTATION SEQRES 1 A 81 GLY PRO GLY SER MET ASP ALA SER THR LYS LYS LEU SER SEQRES 2 A 81 GLU SER LEU LYS ARG ILE GLY ASP GLU LEU ASP SER ASN SEQRES 3 A 81 MET GLU LEU GLN ARG MET ILE ALA ALA VAL ASP THR ASP SEQRES 4 A 81 SER PRO ARG GLU VAL PHE PHE ARG VAL ALA ALA ASP MET SEQRES 5 A 81 PHE SER ASP GLY ASN PHE ASN TRP GLY ARG VAL VAL ALA SEQRES 6 A 81 LEU PHE TYR PHE ALA SER LYS LEU VAL LEU LYS ALA LEU SEQRES 7 A 81 SER THR LYS SEQRES 1 B 81 GLY PRO GLY SER MET ASP ALA SER THR LYS LYS LEU SER SEQRES 2 B 81 GLU SER LEU LYS ARG ILE GLY ASP GLU LEU ASP SER ASN SEQRES 3 B 81 MET GLU LEU GLN ARG MET ILE ALA ALA VAL ASP THR ASP SEQRES 4 B 81 SER PRO ARG GLU VAL PHE PHE ARG VAL ALA ALA ASP MET SEQRES 5 B 81 PHE SER ASP GLY ASN PHE ASN TRP GLY ARG VAL VAL ALA SEQRES 6 B 81 LEU PHE TYR PHE ALA SER LYS LEU VAL LEU LYS ALA LEU SEQRES 7 B 81 SER THR LYS HELIX 1 AA1 ASP A 53 ASN A 73 1 21 HELIX 2 AA2 ASN A 73 ALA A 82 1 10 HELIX 3 AA3 SER A 87 ASP A 102 1 16 HELIX 4 AA4 GLY A 108 SER A 126 1 19 HELIX 5 AA5 ASP B 53 SER B 72 1 20 HELIX 6 AA6 ASN B 73 ALA B 82 1 10 HELIX 7 AA7 SER B 87 ASP B 102 1 16 HELIX 8 AA8 GLY B 108 SER B 126 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1