HEADER METAL BINDING PROTEIN 08-NOV-19 6L99 TITLE ZINC FINGER OF RING FINGER PROTEIN 144A COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF144A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RING FINGER PROTEIN 144A,UBCM4-INTERACTING PROTEIN 4, COMPND 5 UBIQUITIN-CONJUGATING ENZYME 7-INTERACTING PROTEIN 4; COMPND 6 EC: 2.3.2.31; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS RING FINGER PROTEIN 144A, ZINC FINGER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.MIYAMOTO REVDAT 3 15-MAY-24 6L99 1 REMARK REVDAT 2 14-JUN-23 6L99 1 REMARK REVDAT 1 11-NOV-20 6L99 0 JRNL AUTH K.MIYAMOTO JRNL TITL ZINC FINGER OF RING FINGER PROTEIN 144A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVERY STUDIO 2.1, CYANA 2.1 REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (DISCOVERY STUDIO), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014417. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RNF, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800.0 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 126.00 61.50 REMARK 500 1 PRO A 4 87.01 -69.83 REMARK 500 1 VAL A 6 160.79 59.52 REMARK 500 1 SER A 7 -81.93 -171.75 REMARK 500 1 CYS A 8 158.72 -42.52 REMARK 500 1 LEU A 12 27.24 39.30 REMARK 500 1 PRO A 16 -164.40 -69.62 REMARK 500 1 ILE A 23 -93.59 -69.48 REMARK 500 1 ALA A 24 35.38 162.18 REMARK 500 1 GLN A 25 -44.03 177.93 REMARK 500 1 LYS A 36 -71.05 -92.09 REMARK 500 1 GLU A 40 -35.58 -34.29 REMARK 500 1 GLU A 45 -79.78 -71.64 REMARK 500 1 GLU A 48 -150.26 -172.62 REMARK 500 1 THR A 49 -40.37 83.61 REMARK 500 1 ILE A 51 86.88 44.81 REMARK 500 1 CYS A 53 135.82 -34.31 REMARK 500 1 PRO A 54 3.01 -69.71 REMARK 500 1 ASP A 55 77.11 -107.77 REMARK 500 1 GLN A 61 57.41 36.03 REMARK 500 1 ASN A 67 -62.70 -92.23 REMARK 500 1 VAL A 73 -59.67 -138.13 REMARK 500 1 ALA A 74 48.96 -99.41 REMARK 500 2 LEU A 2 -62.37 -139.40 REMARK 500 2 LEU A 5 -150.55 -61.84 REMARK 500 2 VAL A 6 129.44 64.25 REMARK 500 2 SER A 7 -41.76 -170.06 REMARK 500 2 GLU A 14 -81.71 -100.25 REMARK 500 2 TYR A 15 148.24 58.89 REMARK 500 2 PRO A 16 -163.72 -69.71 REMARK 500 2 GLN A 25 -62.35 -142.15 REMARK 500 2 GLN A 27 55.52 74.93 REMARK 500 2 LYS A 36 -70.99 -92.04 REMARK 500 2 GLU A 48 -24.35 165.22 REMARK 500 2 ALA A 50 13.38 55.79 REMARK 500 2 ILE A 51 87.99 37.53 REMARK 500 2 CYS A 53 135.82 -34.29 REMARK 500 2 PRO A 54 3.03 -69.73 REMARK 500 2 GLN A 61 67.70 34.36 REMARK 500 2 VAL A 73 -65.55 -140.04 REMARK 500 3 LEU A 5 -93.38 -142.27 REMARK 500 3 VAL A 6 102.34 54.94 REMARK 500 3 PRO A 16 -166.12 -69.80 REMARK 500 3 ILE A 23 -85.53 -62.54 REMARK 500 3 ALA A 24 -36.00 162.11 REMARK 500 3 GLN A 27 44.52 79.09 REMARK 500 3 LEU A 35 -18.54 -49.44 REMARK 500 3 LYS A 36 -64.80 -92.02 REMARK 500 3 GLN A 37 -19.80 -47.45 REMARK 500 3 ILE A 43 -26.71 -38.27 REMARK 500 REMARK 500 THIS ENTRY HAS 430 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 CYS A 11 SG 110.0 REMARK 620 3 CYS A 31 SG 118.2 117.7 REMARK 620 4 CYS A 34 SG 116.7 105.9 85.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 28 SG 85.9 REMARK 620 3 CYS A 53 SG 113.2 118.2 REMARK 620 4 CYS A 58 SG 115.1 101.6 118.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36297 RELATED DB: BMRB REMARK 900 ZINC FINGER OF RING FINGER PROTEIN 144A DBREF 6L99 A 1 75 UNP P50876 R144A_HUMAN 13 87 SEQRES 1 A 75 ALA LEU ASP PRO LEU VAL SER CYS LYS LEU CYS LEU GLY SEQRES 2 A 75 GLU TYR PRO VAL GLU GLN MET THR THR ILE ALA GLN CYS SEQRES 3 A 75 GLN CYS ILE PHE CYS THR LEU CYS LEU LYS GLN TYR VAL SEQRES 4 A 75 GLU LEU LEU ILE LYS GLU GLY LEU GLU THR ALA ILE SER SEQRES 5 A 75 CYS PRO ASP ALA ALA CYS PRO LYS GLN GLY HIS LEU GLN SEQRES 6 A 75 GLU ASN GLU ILE GLU CYS MET VAL ALA ALA HET ZN A 201 1 HET ZN A 202 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 THR A 32 GLY A 46 1 15 HELIX 2 AA2 GLU A 66 MET A 72 1 7 SHEET 1 AA1 2 MET A 20 THR A 21 0 SHEET 2 AA1 2 PHE A 30 CYS A 31 -1 O PHE A 30 N THR A 21 LINK SG CYS A 8 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 11 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 26 ZN ZN A 202 1555 1555 2.37 LINK SG CYS A 28 ZN ZN A 202 1555 1555 2.33 LINK SG CYS A 31 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 34 ZN ZN A 201 1555 1555 2.37 LINK SG CYS A 53 ZN ZN A 202 1555 1555 2.33 LINK SG CYS A 58 ZN ZN A 202 1555 1555 2.34 SITE 1 AC1 4 CYS A 8 CYS A 11 CYS A 31 CYS A 34 SITE 1 AC2 4 CYS A 26 CYS A 28 CYS A 53 CYS A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1