HEADER VIRUS 11-NOV-19 6LA4 TITLE CRYO-EM STRUCTURE OF FULL ECHOVIRUS 11 PARTICLE AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CAPSID PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: CAPSID PROTEIN VP4; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 3 ORGANISM_TAXID: 12078; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 6 ORGANISM_TAXID: 12078; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 9 ORGANISM_TAXID: 12078; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 12 ORGANISM_TAXID: 12078 KEYWDS CRYO-EM STRUCTURE, ECHOVIRUS 11, FULL PARTICLE, PH 5.5, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR S.LIU,F.G.GAO REVDAT 2 27-MAR-24 6LA4 1 REMARK REVDAT 1 07-OCT-20 6LA4 0 JRNL AUTH S.NIU,C.LIU,C.LIU,S.LIU,Y.SONG,Y.ZHANG,W.TIAN,X.ZHAO,P.WANG, JRNL AUTH 2 F.G.GAO JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF ECHOVIRUS 11 INFECTION BY JRNL TITL 2 USING THE DUAL-RECEPTOR SYSTEM OF CD55 AND FCRN. JRNL REF CHIN.SCI.BULL. 2020 JRNL REFN ISSN 1001-6538 JRNL DOI 10.1360/TB-2019-0786 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.340 REMARK 3 NUMBER OF PARTICLES : 32315 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6LA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014446. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ECHOVIRUS E11 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 102.50 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.493297 0.344161 0.798882 -134.99996 REMARK 350 BIOMT2 2 0.266287 0.814562 -0.515344 92.22906 REMARK 350 BIOMT3 2 -0.828100 0.466950 0.310175 224.02317 REMARK 350 BIOMT1 3 -0.326567 0.823151 0.464518 9.11463 REMARK 350 BIOMT2 3 0.775023 0.514518 -0.366895 15.95759 REMARK 350 BIOMT3 3 -0.541012 0.240196 -0.805985 448.36936 REMARK 350 BIOMT1 4 -0.326567 0.775023 -0.541012 233.18231 REMARK 350 BIOMT2 4 0.823151 0.514518 0.240196 -123.40982 REMARK 350 BIOMT3 4 0.464518 -0.366895 -0.805985 362.99977 REMARK 350 BIOMT1 5 0.493297 0.266287 -0.828100 227.54916 REMARK 350 BIOMT2 5 0.344161 0.814562 0.466950 -133.27216 REMARK 350 BIOMT3 5 0.798882 -0.515344 0.310175 85.89226 REMARK 350 BIOMT1 6 -0.808467 0.513634 0.287335 212.69048 REMARK 350 BIOMT2 6 0.513634 0.377412 0.770546 -142.61745 REMARK 350 BIOMT3 6 0.287335 0.770546 -0.568945 113.16388 REMARK 350 BIOMT1 7 -0.499982 0.274315 -0.821444 433.57512 REMARK 350 BIOMT2 7 -0.284215 0.844004 0.454840 -4.52957 REMARK 350 BIOMT3 7 0.818071 0.460878 -0.344022 17.98360 REMARK 350 BIOMT1 8 0.506645 -0.332200 -0.795584 342.35007 REMARK 350 BIOMT2 8 -0.292108 0.802065 -0.520926 213.57579 REMARK 350 BIOMT3 8 0.811162 0.496321 0.309324 -127.01850 REMARK 350 BIOMT1 9 0.820289 -0.467728 0.329176 65.08526 REMARK 350 BIOMT2 9 0.500863 0.309554 -0.808277 210.28444 REMARK 350 BIOMT3 9 0.276156 0.827893 0.488191 -121.45444 REMARK 350 BIOMT1 10 0.007505 0.055026 0.998457 -15.04877 REMARK 350 BIOMT2 10 0.998839 0.047104 -0.010104 -9.85509 REMARK 350 BIOMT3 10 -0.047587 0.997373 -0.054608 26.98643 REMARK 350 BIOMT1 11 -0.536173 0.273729 -0.798493 436.43059 REMARK 350 BIOMT2 11 0.273729 -0.838458 -0.471233 425.23154 REMARK 350 BIOMT3 11 -0.798493 -0.471233 0.374630 399.28561 REMARK 350 BIOMT1 12 0.469631 -0.334416 -0.817076 355.17871 REMARK 350 BIOMT2 12 0.301987 -0.808811 0.504607 205.38074 REMARK 350 BIOMT3 12 -0.829609 -0.483725 -0.278853 547.54661 REMARK 350 BIOMT1 13 0.819237 -0.492307 0.294082 77.89179 REMARK 350 BIOMT2 13 -0.484272 -0.319269 0.814585 203.06011 REMARK 350 BIOMT3 13 -0.307135 -0.809753 -0.499968 552.46064 REMARK 350 BIOMT1 14 0.029502 0.018255 0.999398 -12.22906 REMARK 350 BIOMT2 14 -0.998464 -0.046362 0.030322 421.47669 REMARK 350 BIOMT3 14 0.046888 -0.998758 0.016860 407.23669 REMARK 350 BIOMT1 15 -0.808187 0.491692 0.324150 209.36010 REMARK 350 BIOMT2 15 -0.529994 -0.367238 -0.764358 558.78618 REMARK 350 BIOMT3 15 -0.256789 -0.789541 0.557391 312.56931 REMARK 350 BIOMT1 16 0.344640 -0.787363 0.511158 192.99264 REMARK 350 BIOMT2 16 -0.787363 -0.538954 -0.299312 549.70326 REMARK 350 BIOMT3 16 0.511158 -0.299312 -0.805686 339.05444 REMARK 350 BIOMT1 17 -0.462945 -0.284060 0.839638 188.35985 REMARK 350 BIOMT2 17 -0.284060 -0.849755 -0.444102 539.23713 REMARK 350 BIOMT3 17 0.839638 -0.444102 0.312700 61.95055 REMARK 350 BIOMT1 18 -0.999315 0.001357 0.036985 412.75722 REMARK 350 BIOMT2 18 0.001357 -0.997314 0.073236 399.72386 REMARK 350 BIOMT3 18 0.036985 0.073236 0.996629 -22.30758 REMARK 350 BIOMT1 19 -0.523224 -0.325550 -0.787562 556.07521 REMARK 350 BIOMT2 19 -0.325550 -0.777710 0.537759 323.96605 REMARK 350 BIOMT3 19 -0.787562 0.537759 0.300934 202.72192 REMARK 350 BIOMT1 20 0.307385 -0.813005 -0.494506 420.25323 REMARK 350 BIOMT2 20 -0.813005 -0.494428 0.307512 416.65842 REMARK 350 BIOMT3 20 -0.494506 0.307512 -0.812958 426.05593 REMARK 350 BIOMT1 21 0.797639 0.537196 0.274211 -127.54974 REMARK 350 BIOMT2 21 0.484101 -0.299049 -0.822323 343.44102 REMARK 350 BIOMT3 21 -0.359746 0.788664 -0.498590 230.64614 REMARK 350 BIOMT1 22 0.309447 0.840139 0.445432 -124.25624 REMARK 350 BIOMT2 22 0.840139 -0.460969 0.285788 66.28688 REMARK 350 BIOMT3 22 0.445432 0.285788 -0.848478 240.25375 REMARK 350 BIOMT1 23 0.007505 0.998839 -0.047587 11.24078 REMARK 350 BIOMT2 23 0.055026 0.047104 0.997373 -25.62326 REMARK 350 BIOMT3 23 0.998457 -0.010104 -0.054608 16.39966 REMARK 350 BIOMT1 24 0.309087 0.793979 -0.523510 91.68904 REMARK 350 BIOMT2 24 -0.786238 0.523030 0.329045 194.72728 REMARK 350 BIOMT3 24 0.535066 0.309900 0.785918 -131.55737 REMARK 350 BIOMT1 25 0.797417 0.508668 -0.324628 5.91178 REMARK 350 BIOMT2 25 -0.521054 0.309096 -0.795589 422.82155 REMARK 350 BIOMT3 25 -0.304349 0.803565 0.511522 0.85423 REMARK 350 BIOMT1 26 -0.290153 0.823731 0.487112 -3.48215 REMARK 350 BIOMT2 26 -0.781264 -0.497851 0.376525 395.99706 REMARK 350 BIOMT3 26 0.552665 -0.271314 0.788004 -14.76808 REMARK 350 BIOMT1 27 -0.327160 0.798578 -0.505212 220.78487 REMARK 350 BIOMT2 27 -0.829766 -0.498593 -0.250784 539.90155 REMARK 350 BIOMT3 27 -0.452166 0.337162 0.825753 62.13037 REMARK 350 BIOMT1 28 0.469631 0.301987 -0.829609 225.42429 REMARK 350 BIOMT2 28 -0.334416 -0.808811 -0.483725 549.75382 REMARK 350 BIOMT3 28 -0.817076 0.504607 -0.278853 339.25665 REMARK 350 BIOMT1 29 0.999082 0.020230 -0.037772 4.02459 REMARK 350 BIOMT2 29 0.020230 -0.999795 -0.000382 411.93838 REMARK 350 BIOMT3 29 -0.037772 -0.000382 -0.999286 433.63167 REMARK 350 BIOMT1 30 0.529510 0.342686 0.776006 -137.44736 REMARK 350 BIOMT2 30 -0.255937 -0.807611 0.531282 316.91147 REMARK 350 BIOMT3 30 0.808774 -0.479927 -0.339932 214.83235 REMARK 350 BIOMT1 31 -0.499582 -0.361296 -0.787326 558.48583 REMARK 350 BIOMT2 31 0.315199 0.770759 -0.553697 99.21078 REMARK 350 BIOMT3 31 0.806887 -0.524782 -0.271177 209.92649 REMARK 350 BIOMT1 32 0.309334 -0.833877 -0.457124 416.22800 REMARK 350 BIOMT2 32 0.819247 0.477762 -0.317142 3.70429 REMARK 350 BIOMT3 32 0.482854 -0.276394 0.830938 -8.15329 REMARK 350 BIOMT1 33 0.309087 -0.786238 0.535066 195.15390 REMARK 350 BIOMT2 33 0.793979 0.523029 0.309900 -133.87763 REMARK 350 BIOMT3 33 -0.523510 0.329045 0.785917 87.31935 REMARK 350 BIOMT1 34 -0.499982 -0.284215 0.818071 200.78042 REMARK 350 BIOMT2 34 0.274315 0.844004 0.460878 -123.40144 REMARK 350 BIOMT3 34 -0.821444 0.454840 -0.344022 364.40447 REMARK 350 BIOMT1 35 -0.999767 -0.021587 0.000787 425.33190 REMARK 350 BIOMT2 35 -0.021587 0.997109 -0.072854 20.65512 REMARK 350 BIOMT3 35 0.000787 -0.072854 -0.997342 440.17984 REMARK 350 BIOMT1 36 -0.007905 -0.999631 0.026002 414.65978 REMARK 350 BIOMT2 36 -0.018037 0.026142 0.999496 -6.33150 REMARK 350 BIOMT3 36 -0.999806 0.007432 -0.018237 425.69937 REMARK 350 BIOMT1 37 -0.291621 -0.804840 0.516904 329.35708 REMARK 350 BIOMT2 37 -0.829619 0.481800 0.282137 222.42464 REMARK 350 BIOMT3 37 -0.476120 -0.346556 -0.808213 557.27310 REMARK 350 BIOMT1 38 -0.786223 -0.514589 0.342130 410.29474 REMARK 350 BIOMT2 38 -0.514589 0.238678 -0.823548 442.06442 REMARK 350 BIOMT3 38 0.342130 -0.823548 -0.452456 408.52826 REMARK 350 BIOMT1 39 -0.808187 -0.529994 -0.256789 545.61966 REMARK 350 BIOMT2 39 0.491692 -0.367238 -0.789541 349.05314 REMARK 350 BIOMT3 39 0.324150 -0.764358 0.557391 185.02517 REMARK 350 BIOMT1 40 -0.327160 -0.829766 -0.452166 548.31740 REMARK 350 BIOMT2 40 0.798578 -0.498593 0.337162 71.92922 REMARK 350 BIOMT3 40 -0.505212 -0.250784 0.825753 195.63750 REMARK 350 BIOMT1 41 0.797639 0.484101 -0.359746 18.45251 REMARK 350 BIOMT2 41 0.537196 -0.299049 0.788664 -10.67734 REMARK 350 BIOMT3 41 0.274211 -0.822323 -0.498590 432.39312 REMARK 350 BIOMT1 42 0.820289 0.500863 0.276156 -125.17204 REMARK 350 BIOMT2 42 -0.467728 0.309554 0.827893 65.89913 REMARK 350 BIOMT3 42 0.329176 -0.808277 0.488191 207.83667 REMARK 350 BIOMT1 43 0.309334 0.819247 0.482854 -127.85139 REMARK 350 BIOMT2 43 -0.833877 0.477762 -0.276394 343.05948 REMARK 350 BIOMT3 43 -0.457124 -0.317142 0.830938 198.21746 REMARK 350 BIOMT1 44 -0.029103 0.999256 -0.025303 14.11724 REMARK 350 BIOMT2 44 -0.055244 -0.026883 -0.998111 437.77753 REMARK 350 BIOMT3 44 -0.998049 -0.027650 0.055986 416.82891 REMARK 350 BIOMT1 45 0.272687 0.792125 -0.546059 104.53802 REMARK 350 BIOMT2 45 0.792125 -0.506978 -0.339869 219.15616 REMARK 350 BIOMT3 45 -0.546059 -0.339869 -0.765708 561.55743 REMARK 350 BIOMT1 46 -0.499582 0.315199 0.806887 78.35123 REMARK 350 BIOMT2 46 -0.361296 0.770759 -0.524782 235.47697 REMARK 350 BIOMT3 46 -0.787326 -0.553697 -0.271177 551.57049 REMARK 350 BIOMT1 47 -0.830692 0.461589 -0.311266 355.62678 REMARK 350 BIOMT2 47 0.461589 0.258440 -0.848613 237.77507 REMARK 350 BIOMT3 47 -0.311266 -0.848613 -0.427748 546.04267 REMARK 350 BIOMT1 48 -0.029103 -0.055244 -0.998049 440.61115 REMARK 350 BIOMT2 48 0.999256 -0.026883 -0.027650 9.18731 REMARK 350 BIOMT3 48 -0.025303 -0.998111 0.055986 413.97127 REMARK 350 BIOMT1 49 0.797417 -0.521054 -0.304349 215.85883 REMARK 350 BIOMT2 49 0.508668 0.309096 0.803565 -134.38581 REMARK 350 BIOMT3 49 -0.324628 -0.795589 0.511522 337.87447 REMARK 350 BIOMT1 50 0.506645 -0.292108 0.811162 -8.03011 REMARK 350 BIOMT2 50 -0.332200 0.802065 0.496321 5.46889 REMARK 350 BIOMT3 50 -0.795584 -0.520926 0.309324 422.91547 REMARK 350 BIOMT1 51 -0.007905 -0.018037 -0.999806 428.78040 REMARK 350 BIOMT2 51 -0.999631 0.026142 0.007432 411.50844 REMARK 350 BIOMT3 51 0.026002 0.999496 -0.018237 3.30954 REMARK 350 BIOMT1 52 0.819237 -0.484272 -0.307135 204.20429 REMARK 350 BIOMT2 52 -0.492307 -0.319269 -0.809753 550.53443 REMARK 350 BIOMT3 52 0.294082 0.814585 -0.499968 87.89627 REMARK 350 BIOMT1 53 0.529510 -0.255937 0.808774 -19.86189 REMARK 350 BIOMT2 53 0.342686 -0.807611 -0.479927 406.14650 REMARK 350 BIOMT3 53 0.776006 0.531282 -0.339932 11.31925 REMARK 350 BIOMT1 54 -0.476693 0.351417 0.805773 66.23370 REMARK 350 BIOMT2 54 0.351417 -0.764013 0.541102 177.88386 REMARK 350 BIOMT3 54 0.805773 0.541102 0.240706 -120.59467 REMARK 350 BIOMT1 55 -0.808834 0.498447 -0.311991 343.50989 REMARK 350 BIOMT2 55 -0.478180 -0.248725 0.842306 181.19772 REMARK 350 BIOMT3 55 0.342245 0.830474 0.439525 -125.54495 REMARK 350 BIOMT1 56 -0.290153 -0.781264 0.552665 316.52957 REMARK 350 BIOMT2 56 0.823731 -0.497851 -0.271314 196.00928 REMARK 350 BIOMT3 56 0.487112 0.376525 0.788004 -135.76923 REMARK 350 BIOMT1 57 -0.808834 -0.478180 0.342245 407.45469 REMARK 350 BIOMT2 57 0.498447 -0.248725 0.830474 -21.89128 REMARK 350 BIOMT3 57 -0.311991 0.842306 0.439525 9.72831 REMARK 350 BIOMT1 58 -0.809741 -0.508065 -0.293579 549.21584 REMARK 350 BIOMT2 58 -0.508065 0.356733 0.783971 73.92407 REMARK 350 BIOMT3 58 -0.293579 0.783971 -0.546992 227.99594 REMARK 350 BIOMT1 59 -0.291621 -0.829619 -0.476120 545.90394 REMARK 350 BIOMT2 59 -0.804840 0.481800 -0.346556 351.04177 REMARK 350 BIOMT3 59 0.516904 0.282137 -0.808213 217.39522 REMARK 350 BIOMT1 60 0.029502 -0.998464 0.046888 402.09591 REMARK 350 BIOMT2 60 0.018255 -0.046362 -0.998758 426.49458 REMARK 350 BIOMT3 60 0.999398 0.030322 0.016860 -7.42402 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 14 REMARK 465 THR D 15 REMARK 465 GLY D 16 REMARK 465 LEU D 17 REMARK 465 ASN D 18 REMARK 465 ALA D 19 REMARK 465 SER D 20 REMARK 465 GLY D 21 REMARK 465 ARG D 22 REMARK 465 SER D 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 228 O LEU A 230 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 59.30 -101.41 REMARK 500 ARG A 59 47.97 -93.35 REMARK 500 THR A 86 -6.61 66.79 REMARK 500 SER A 227 -155.39 -157.74 REMARK 500 SER A 228 73.19 68.49 REMARK 500 VAL A 249 78.53 56.48 REMARK 500 ASN B 30 -167.38 -167.97 REMARK 500 ASP B 57 -20.35 76.44 REMARK 500 PRO B 83 -157.70 -74.47 REMARK 500 ASP B 84 -9.26 85.83 REMARK 500 ASN B 164 -1.68 72.75 REMARK 500 ALA B 173 19.83 58.33 REMARK 500 LEU B 182 -8.66 -58.28 REMARK 500 SER B 232 -163.83 -125.23 REMARK 500 ASN C 56 57.58 -94.62 REMARK 500 LEU C 224 72.91 64.56 REMARK 500 ASP D 49 70.75 -154.24 REMARK 500 PRO D 56 59.31 -91.14 REMARK 500 LYS D 63 -10.52 80.71 REMARK 500 LEU D 68 -169.30 -125.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0855 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF FULL ECHOVIRUS 11 PARTICLE AT PH 5.5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE VIRUS WAS ISOLATED FROM CHINA, AND THE GENEBANK: MN496161. DBREF 6LA4 A 3 287 PDB 6LA4 6LA4 3 287 DBREF 6LA4 B 11 261 PDB 6LA4 6LA4 11 261 DBREF 6LA4 C 1 238 PDB 6LA4 6LA4 1 238 DBREF 6LA4 D 1 69 PDB 6LA4 6LA4 1 69 SEQRES 1 A 285 VAL VAL GLU ALA VAL GLU ASN ALA VAL ALA ARG VAL ALA SEQRES 2 A 285 ASP THR ILE SER SER GLY PRO SER ASN SER GLN ALA VAL SEQRES 3 A 285 PRO ALA LEU THR ALA VAL GLU THR GLY HIS THR SER GLN SEQRES 4 A 285 VAL THR PRO SER ASP THR ILE GLN THR ARG HIS VAL ARG SEQRES 5 A 285 ASN TYR HIS SER ARG SER GLU SER SER ILE GLU ASN PHE SEQRES 6 A 285 LEU CYS ARG SER ALA CYS VAL TYR MET GLY GLU TYR HIS SEQRES 7 A 285 THR THR ASN THR ASP THR SER LYS LEU PHE ALA SER TRP SEQRES 8 A 285 THR ILE ASN ALA ARG ARG MET VAL GLN MET ARG ARG LYS SEQRES 9 A 285 LEU GLU LEU PHE THR TYR VAL ARG PHE ASP MET GLU VAL SEQRES 10 A 285 THR PHE VAL ILE THR SER LYS GLN ASP GLN GLY THR GLN SEQRES 11 A 285 LEU GLY GLN ASP MET PRO PRO LEU THR HIS GLN ILE MET SEQRES 12 A 285 TYR ILE PRO PRO GLY GLY PRO ILE PRO LYS SER VAL THR SEQRES 13 A 285 ASP TYR THR TRP GLN THR SER THR ASN PRO SER ILE PHE SEQRES 14 A 285 TRP THR GLU GLY ASN ALA PRO PRO ARG MET SER ILE PRO SEQRES 15 A 285 PHE ILE SER ILE GLY ASN ALA TYR SER ASN PHE TYR ASP SEQRES 16 A 285 GLY TRP SER HIS PHE SER GLN ASN GLY VAL TYR GLY TYR SEQRES 17 A 285 ASN THR LEU ASN HIS MET GLY GLN ILE TYR VAL ARG HIS SEQRES 18 A 285 VAL ASN GLY SER SER PRO LEU PRO MET THR SER THR VAL SEQRES 19 A 285 ARG MET TYR PHE LYS PRO LYS HIS VAL LYS VAL TRP VAL SEQRES 20 A 285 PRO ARG PRO PRO ARG LEU CYS GLN TYR LYS ASN ALA SER SEQRES 21 A 285 THR VAL ASN PHE THR PRO THR ASN ILE THR GLU LYS ARG SEQRES 22 A 285 GLN SER ILE ASN TYR ILE PRO GLU THR VAL LYS PRO SEQRES 1 B 251 ASP ARG VAL ARG SER ILE THR LEU GLY ASN SER THR ILE SEQRES 2 B 251 THR THR GLN GLU SER ALA ASN VAL VAL VAL ALA TYR GLY SEQRES 3 B 251 ARG TRP PRO GLU TYR LEU LYS ASP ASN GLU ALA THR ALA SEQRES 4 B 251 GLU ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS ARG SEQRES 5 B 251 PHE TYR THR LEU GLU SER VAL THR TRP GLU ARG ASP SER SEQRES 6 B 251 PRO GLY TRP TRP TRP LYS PHE PRO ASP ALA LEU LYS ASP SEQRES 7 B 251 MET GLY LEU PHE GLY GLN ASN MET TYR TYR HIS TYR LEU SEQRES 8 B 251 GLY ARG ALA GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SEQRES 9 B 251 SER LYS PHE HIS GLN GLY CYS LEU MET VAL VAL CYS VAL SEQRES 10 B 251 PRO GLU ALA GLU MET GLY CYS SER GLN VAL ASP GLY THR SEQRES 11 B 251 VAL ASN GLU HIS SER LEU SER GLU GLY GLU THR ALA LYS SEQRES 12 B 251 LYS PHE ALA SER THR SER THR ASN GLY THR ASN THR VAL SEQRES 13 B 251 GLN SER ILE VAL THR ASN ALA GLY MET GLY VAL GLY VAL SEQRES 14 B 251 GLY ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN LEU SEQRES 15 B 251 ARG THR ASN ASN CYS ALA THR ILE VAL MET PRO TYR ILE SEQRES 16 B 251 ASN ASN VAL PRO MET ASP ASN MET PHE ARG HIS HIS ASN SEQRES 17 B 251 PHE THR LEU MET ILE ILE PRO PHE VAL PRO LEU ASP TYR SEQRES 18 B 251 SER SER ASP SER SER THR TYR VAL PRO ILE THR VAL THR SEQRES 19 B 251 VAL ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG LEU SEQRES 20 B 251 ALA THR SER LEU SEQRES 1 C 238 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 238 LEU THR SER ASP ASP PHE GLN SER PRO SER ALA MET PRO SEQRES 3 C 238 GLN PHE ASP VAL THR PRO GLU LEU ASN ILE PRO GLY GLU SEQRES 4 C 238 VAL GLN ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 238 VAL PRO VAL ASN ASN VAL GLU GLY LYS LEU ASP THR MET SEQRES 6 C 238 GLU ILE TYR ARG ILE PRO VAL GLN SER GLY ASN HIS GLN SEQRES 7 C 238 SER SER GLN VAL PHE GLY PHE GLN VAL GLN PRO GLY LEU SEQRES 8 C 238 ASP ASN VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR ALA HIS TRP SER GLY SER ILE LYS LEU THR SEQRES 10 C 238 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 238 LEU LEU ALA TYR ALA PRO PRO GLY ALA ASN ALA PRO LYS SEQRES 12 C 238 SER ARG LYS ASP ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 238 ASP VAL GLY LEU GLN SER SER CYS VAL LEU CYS ILE PRO SEQRES 14 C 238 TRP ILE SER GLN THR HIS TYR ARG LEU VAL GLN GLN ASP SEQRES 15 C 238 GLU TYR THR SER ALA GLY ASN VAL THR CYS TRP TYR GLN SEQRES 16 C 238 THR GLY ILE VAL VAL PRO ALA GLY THR PRO THR SER CYS SEQRES 17 C 238 SER ILE MET CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU LYS ASP THR PRO PHE ILE GLU GLN SER SEQRES 19 C 238 ALA LEU LEU GLN SEQRES 1 D 69 MET GLY ALA GLN VAL SER THR GLN LYS THR GLY ALA HIS SEQRES 2 D 69 GLU THR GLY LEU ASN ALA SER GLY ARG SER ILE ILE HIS SEQRES 3 D 69 TYR THR ASN ILE ASN TYR TYR LYS ASP ALA ALA SER ASN SEQRES 4 D 69 SER ALA ASN ARG GLN ASP PHE SER GLN ASP PRO GLY LYS SEQRES 5 D 69 PHE THR GLU PRO VAL LYS ASP ILE MET VAL LYS SER LEU SEQRES 6 D 69 PRO ALA LEU ASN HET SPH A 301 21 HETNAM SPH SPHINGOSINE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 33 GLY A 37 5 5 HELIX 2 AA2 THR A 43 THR A 47 5 5 HELIX 3 AA3 SER A 63 CYS A 69 1 7 HELIX 4 AA4 MET A 100 GLU A 108 1 9 HELIX 5 AA5 ASP A 159 THR A 164 5 6 HELIX 6 AA6 GLY A 209 LEU A 213 5 5 HELIX 7 AA7 LYS B 43 ALA B 47 5 5 HELIX 8 AA8 MET B 89 TYR B 98 1 10 HELIX 9 AA9 ASN B 142 SER B 147 1 6 HELIX 10 AB1 ILE B 169 ALA B 173 5 5 HELIX 11 AB2 GLY B 178 PHE B 185 5 8 HELIX 12 AB3 LEU C 43 GLU C 48 1 6 HELIX 13 AB4 THR C 64 ARG C 69 5 6 HELIX 14 AB5 THR C 98 ASN C 105 1 8 HELIX 15 AB6 SER C 144 MET C 149 1 6 HELIX 16 AB7 ASP D 35 ASN D 39 5 5 HELIX 17 AB8 PRO D 50 GLU D 55 1 6 SHEET 1 AA1 3 VAL A 4 VAL A 7 0 SHEET 2 AA1 3 ALA D 3 THR D 7 1 O VAL D 5 N VAL A 7 SHEET 3 AA1 3 HIS D 26 ASN D 29 -1 O ASN D 29 N GLN D 4 SHEET 1 AA2 5 LEU A 31 THR A 32 0 SHEET 2 AA2 5 SER C 163 ILE C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA2 5 ILE C 114 PHE C 120 -1 N ILE C 114 O ILE C 168 SHEET 4 AA2 5 CYS C 208 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA2 5 SER C 51 VAL C 52 -1 N SER C 51 O VAL C 214 SHEET 1 AA3 5 LEU A 31 THR A 32 0 SHEET 2 AA3 5 SER C 163 ILE C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA3 5 ILE C 114 PHE C 120 -1 N ILE C 114 O ILE C 168 SHEET 4 AA3 5 CYS C 208 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA3 5 ILE C 70 VAL C 72 -1 N VAL C 72 O CYS C 208 SHEET 1 AA4 4 ALA A 72 HIS A 80 0 SHEET 2 AA4 4 MET A 232 PRO A 250 -1 O SER A 234 N TYR A 79 SHEET 3 AA4 4 PHE A 110 GLN A 127 -1 N THR A 120 O TYR A 239 SHEET 4 AA4 4 TYR A 192 SER A 193 -1 O TYR A 192 N VAL A 113 SHEET 1 AA5 4 ARG A 180 ILE A 183 0 SHEET 2 AA5 4 PHE A 110 GLN A 127 -1 N VAL A 119 O MET A 181 SHEET 3 AA5 4 MET A 232 PRO A 250 -1 O TYR A 239 N THR A 120 SHEET 4 AA5 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 247 SHEET 1 AA6 4 PHE A 90 THR A 94 0 SHEET 2 AA6 4 GLN A 218 HIS A 223 -1 O VAL A 221 N ALA A 91 SHEET 3 AA6 4 THR A 141 ILE A 147 -1 N MET A 145 O TYR A 220 SHEET 4 AA6 4 SER A 169 THR A 173 -1 O TRP A 172 N HIS A 142 SHEET 1 AA7 2 ARG B 14 LEU B 18 0 SHEET 2 AA7 2 SER B 21 THR B 25 -1 O SER B 21 N LEU B 18 SHEET 1 AA8 5 VAL B 32 VAL B 33 0 SHEET 2 AA8 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA8 5 HIS B 99 GLN B 111 -1 N ILE B 108 O ILE B 200 SHEET 4 AA8 5 PRO B 240 LEU B 255 -1 O MET B 248 N GLY B 105 SHEET 5 AA8 5 TYR B 64 THR B 65 -1 N TYR B 64 O VAL B 245 SHEET 1 AA9 5 VAL B 32 VAL B 33 0 SHEET 2 AA9 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA9 5 HIS B 99 GLN B 111 -1 N ILE B 108 O ILE B 200 SHEET 4 AA9 5 PRO B 240 LEU B 255 -1 O MET B 248 N GLY B 105 SHEET 5 AA9 5 VAL B 69 THR B 70 -1 N VAL B 69 O ILE B 241 SHEET 1 AB1 5 LYS B 153 LYS B 154 0 SHEET 2 AB1 5 TRP B 78 PHE B 82 -1 N TRP B 79 O LYS B 153 SHEET 3 AB1 5 PHE B 219 ASP B 230 -1 O PHE B 219 N PHE B 82 SHEET 4 AB1 5 GLN B 119 PRO B 128 -1 N VAL B 125 O MET B 222 SHEET 5 AB1 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AB2 4 GLN C 81 GLN C 86 0 SHEET 2 AB2 4 ASN C 189 TYR C 194 -1 O VAL C 190 N PHE C 85 SHEET 3 AB2 4 LYS C 129 ALA C 135 -1 N ALA C 133 O THR C 191 SHEET 4 AB2 4 THR C 152 ASP C 157 -1 O THR C 152 N TYR C 134 SHEET 1 AB3 3 ARG C 177 LEU C 178 0 SHEET 2 AB3 3 TYR C 107 SER C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB3 3 SER C 221 LEU C 225 -1 O ARG C 223 N HIS C 109 CISPEP 1 PHE B 82 PRO B 83 0 -4.53 SITE 1 AC1 10 ILE A 95 ALA A 97 MET A 117 TYR A 146 SITE 2 AC1 10 PRO A 168 MET A 181 TYR A 192 ASN A 194 SITE 3 AC1 10 MET A 216 ILE A 219 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000