HEADER VIRUS 12-NOV-19 6LA5 TITLE CRYO-EM STRUCTURE OF ECHOVIRUS 11 COMPLEXED WITH ITS ATTACHING TITLE 2 RECEPTOR CD55 AT PH 7.4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CAPSID PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: CAPSID PROTEIN VP4; COMPND 12 CHAIN: D; COMPND 13 MOL_ID: 5; COMPND 14 MOLECULE: COMPLEMENT DECAY-ACCELERATING FACTOR; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 3 ORGANISM_TAXID: 12078; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 6 ORGANISM_TAXID: 12078; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 9 ORGANISM_TAXID: 12078; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 12 ORGANISM_TAXID: 12078; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: CD55, CR, DAF; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CRYO-EM STRUCTURE, ECHOVIRUS 11, CD55, PH 7.4, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR S.LIU,F.G.GAO REVDAT 1 07-OCT-20 6LA5 0 JRNL AUTH S.NIU,C.LIU,C.LIU,S.LIU,Y.SONG,Y.ZHANG,W.TIAN,X.ZHAO,P.WANG, JRNL AUTH 2 F.G.GAO JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF ECHOVIRUS 11 INFECTION BY JRNL TITL 2 USING THE DUAL-RECEPTOR SYSTEM OF CD55 AND FCRN. JRNL REF CHIN.SCI.BULL. 2020 JRNL REFN ISSN 1001-6538 JRNL DOI 10.1360/TB-2019-0786 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.860 REMARK 3 NUMBER OF PARTICLES : 25524 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6LA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014450. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ECHOVIRUS E11 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1.03 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.490095 -0.266726 0.829858 -14.80904 REMARK 350 BIOMT2 2 -0.340381 0.817886 0.463899 9.78389 REMARK 350 BIOMT3 2 -0.802464 -0.509823 0.310053 412.60268 REMARK 350 BIOMT1 3 -0.334950 -0.771953 0.540275 317.72519 REMARK 350 BIOMT2 3 -0.817475 0.523220 0.240782 214.23282 REMARK 350 BIOMT3 3 -0.468555 -0.361011 -0.806304 547.42709 REMARK 350 BIOMT1 4 -0.334950 -0.817475 -0.468555 538.05170 REMARK 350 BIOMT2 4 -0.771953 0.523220 -0.361011 330.80531 REMARK 350 BIOMT3 4 0.540275 0.240782 -0.806304 218.15047 REMARK 350 BIOMT1 5 0.490095 -0.340381 -0.802464 341.68673 REMARK 350 BIOMT2 5 -0.266726 0.817886 -0.509823 198.40215 REMARK 350 BIOMT3 5 0.829858 0.463899 0.310053 -120.17807 REMARK 350 BIOMT1 6 0.304189 -0.842951 -0.443737 406.53310 REMARK 350 BIOMT2 6 -0.842951 -0.455166 0.286805 407.77773 REMARK 350 BIOMT3 6 -0.443737 0.286805 -0.849023 420.20294 REMARK 350 BIOMT1 7 0.792089 -0.544346 -0.276192 210.69409 REMARK 350 BIOMT2 7 -0.488347 -0.293657 -0.821756 534.14433 REMARK 350 BIOMT3 7 0.366214 0.785782 -0.498432 79.27103 REMARK 350 BIOMT1 8 0.795118 -0.515675 0.319165 79.68048 REMARK 350 BIOMT2 8 0.520049 0.309027 -0.796274 199.44435 REMARK 350 BIOMT3 8 0.311988 0.799113 0.513889 -124.11864 REMARK 350 BIOMT1 9 0.309091 -0.796560 0.519572 194.54862 REMARK 350 BIOMT2 9 0.788667 0.519997 0.328037 -133.77822 REMARK 350 BIOMT3 9 -0.531477 0.308376 0.788947 91.11155 REMARK 350 BIOMT1 10 0.005680 -0.998828 0.048073 396.55465 REMARK 350 BIOMT2 10 -0.053714 0.047699 0.997416 -5.02110 REMARK 350 BIOMT3 10 -0.998540 -0.008248 -0.053380 427.52078 REMARK 350 BIOMT1 11 -0.778383 0.524492 -0.345004 331.92561 REMARK 350 BIOMT2 11 0.524492 0.241295 -0.816508 216.46738 REMARK 350 BIOMT3 11 -0.345004 -0.816508 -0.462912 542.30008 REMARK 350 BIOMT1 12 -0.283156 0.812481 -0.509606 206.23474 REMARK 350 BIOMT2 12 0.830136 0.473730 0.294030 -125.83232 REMARK 350 BIOMT3 12 0.480309 -0.339786 -0.808609 348.42195 REMARK 350 BIOMT1 13 -0.006386 0.999850 -0.016075 8.11252 REMARK 350 BIOMT2 13 0.009648 0.016136 0.999823 -12.17344 REMARK 350 BIOMT3 13 0.999933 0.006230 -0.009750 4.35038 REMARK 350 BIOMT1 14 -0.330561 0.827662 0.453546 11.35713 REMARK 350 BIOMT2 14 -0.803086 -0.499109 0.325490 400.37131 REMARK 350 BIOMT3 14 0.495765 -0.256642 0.829670 -14.41943 REMARK 350 BIOMT1 15 -0.807681 0.533875 0.250257 211.48462 REMARK 350 BIOMT2 15 -0.484895 -0.359953 -0.797064 541.67911 REMARK 350 BIOMT3 15 -0.335452 -0.765122 0.549600 318.05177 REMARK 350 BIOMT1 16 -0.525806 0.318459 0.788741 84.39151 REMARK 350 BIOMT2 16 0.318459 -0.786129 0.529703 184.98654 REMARK 350 BIOMT3 16 0.788741 0.529703 0.311935 -125.42605 REMARK 350 BIOMT1 17 -0.999028 -0.001408 -0.044060 420.73044 REMARK 350 BIOMT2 17 -0.001408 -0.997960 0.063827 391.13574 REMARK 350 BIOMT3 17 -0.044060 0.063827 0.996988 -3.21870 REMARK 350 BIOMT1 18 -0.453782 0.287778 -0.843366 417.33204 REMARK 350 BIOMT2 18 0.287778 -0.848383 -0.444332 407.72792 REMARK 350 BIOMT3 18 -0.843366 -0.444332 0.302165 409.41813 REMARK 350 BIOMT1 19 0.356420 0.786372 -0.504563 78.89278 REMARK 350 BIOMT2 19 0.786372 -0.544108 -0.292516 211.83325 REMARK 350 BIOMT3 19 -0.504563 -0.292516 -0.812312 542.23437 REMARK 350 BIOMT1 20 0.311907 0.805334 0.504134 -126.87578 REMARK 350 BIOMT2 20 0.805334 -0.505633 0.309470 74.17150 REMARK 350 BIOMT3 20 0.504134 0.309470 -0.806274 211.68248 REMARK 350 BIOMT1 21 -0.499925 -0.273178 0.821857 191.82997 REMARK 350 BIOMT2 21 0.293279 0.839488 0.457436 -123.58561 REMARK 350 BIOMT3 21 -0.814900 0.469717 -0.339563 352.93708 REMARK 350 BIOMT1 22 -0.811536 -0.509087 -0.286774 535.66110 REMARK 350 BIOMT2 22 -0.509087 0.375169 0.774647 69.02401 REMARK 350 BIOMT3 22 -0.286774 0.774647 -0.563633 229.49601 REMARK 350 BIOMT1 23 0.005680 -0.053714 -0.998540 424.37451 REMARK 350 BIOMT2 23 -0.998828 0.047699 -0.008248 399.85530 REMARK 350 BIOMT3 23 0.048073 0.997416 -0.053380 8.76552 REMARK 350 BIOMT1 24 0.822359 0.463632 -0.329804 11.76449 REMARK 350 BIOMT2 24 -0.499138 0.309631 -0.809315 411.71067 REMARK 350 BIOMT3 24 -0.273106 0.830165 0.486044 -4.21236 REMARK 350 BIOMT1 25 0.509878 0.327995 0.795263 -131.95594 REMARK 350 BIOMT2 25 0.299428 0.798983 -0.521506 88.20640 REMARK 350 BIOMT3 25 -0.806453 0.504029 0.309173 208.49737 REMARK 350 BIOMT1 26 -0.286484 0.781466 -0.554290 222.54496 REMARK 350 BIOMT2 26 -0.821416 -0.498131 -0.277743 530.18247 REMARK 350 BIOMT3 26 -0.493156 0.375733 0.784615 70.50792 REMARK 350 BIOMT1 27 0.038397 0.998153 -0.047079 5.73179 REMARK 350 BIOMT2 27 -0.010138 -0.046722 -0.998856 422.87560 REMARK 350 BIOMT3 27 -0.999211 0.038830 0.008325 405.22165 REMARK 350 BIOMT1 28 -0.283156 0.830136 0.480309 -4.49586 REMARK 350 BIOMT2 28 0.812481 0.473731 -0.339786 10.43775 REMARK 350 BIOMT3 28 -0.509606 0.294030 -0.808609 423.83398 REMARK 350 BIOMT1 29 -0.806767 0.509609 0.299042 205.99628 REMARK 350 BIOMT2 29 0.509609 0.343979 0.788655 -137.15598 REMARK 350 BIOMT3 29 0.299042 0.788655 -0.537212 100.62329 REMARK 350 BIOMT1 30 -0.808824 0.479530 -0.340375 346.31522 REMARK 350 BIOMT2 30 -0.500194 -0.256665 0.827000 184.06392 REMARK 350 BIOMT3 30 0.309208 0.839151 0.447455 -117.74423 REMARK 350 BIOMT1 31 -0.037691 -0.999176 0.015081 412.45127 REMARK 350 BIOMT2 31 0.054204 -0.017113 -0.998383 403.55059 REMARK 350 BIOMT3 31 0.997818 -0.036812 0.054804 -0.01585 REMARK 350 BIOMT1 32 0.309527 -0.814847 -0.490119 409.45585 REMARK 350 BIOMT2 32 0.833556 0.480544 -0.272509 -9.35514 REMARK 350 BIOMT3 32 0.457577 -0.324193 0.827963 7.45948 REMARK 350 BIOMT1 33 0.822359 -0.499138 -0.273106 194.67523 REMARK 350 BIOMT2 33 0.463632 0.309631 0.830165 -129.43580 REMARK 350 BIOMT3 33 -0.329804 -0.809315 0.486044 339.13088 REMARK 350 BIOMT1 34 0.792089 -0.488347 0.366214 64.92892 REMARK 350 BIOMT2 34 -0.544346 -0.293657 0.785782 209.25601 REMARK 350 BIOMT3 34 -0.276192 -0.821756 -0.498432 536.63975 REMARK 350 BIOMT1 35 0.260549 -0.797387 0.544324 199.52191 REMARK 350 BIOMT2 35 -0.797387 -0.495596 -0.344324 538.65972 REMARK 350 BIOMT3 35 0.544324 -0.344324 -0.764953 327.03554 REMARK 350 BIOMT1 36 0.824099 0.490887 -0.282648 -3.97597 REMARK 350 BIOMT2 36 0.473933 -0.324243 0.818690 -0.91581 REMARK 350 BIOMT3 36 0.310238 -0.808638 -0.499856 413.64782 REMARK 350 BIOMT1 37 0.463612 0.325782 0.823972 -127.99851 REMARK 350 BIOMT2 37 -0.314331 -0.808991 0.496718 326.68719 REMARK 350 BIOMT3 37 0.828408 -0.489285 -0.272655 194.89982 REMARK 350 BIOMT1 38 -0.544884 -0.277285 0.791337 208.29635 REMARK 350 BIOMT2 38 -0.277285 -0.831061 -0.482132 528.37440 REMARK 350 BIOMT3 38 0.791337 -0.482132 0.375945 65.34658 REMARK 350 BIOMT1 39 -0.807681 -0.484895 -0.335452 540.16054 REMARK 350 BIOMT2 39 0.533875 -0.359953 -0.765122 325.42095 REMARK 350 BIOMT3 39 0.250257 -0.797064 0.549600 204.02628 REMARK 350 BIOMT1 40 0.038397 -0.010138 -0.999211 408.96903 REMARK 350 BIOMT2 40 0.998153 -0.046722 0.038830 -1.69838 REMARK 350 BIOMT3 40 -0.047079 -0.998856 0.008325 419.28828 REMARK 350 BIOMT1 41 -0.499925 0.293279 -0.814900 419.75419 REMARK 350 BIOMT2 41 -0.273178 0.839488 0.469717 -9.62830 REMARK 350 BIOMT3 41 0.821857 0.457436 -0.339563 18.72008 REMARK 350 BIOMT1 42 0.309091 0.788667 -0.531477 93.79692 REMARK 350 BIOMT2 42 -0.796560 0.519997 0.308376 196.43724 REMARK 350 BIOMT3 42 0.519572 0.328037 0.788947 -129.07997 REMARK 350 BIOMT1 43 0.309527 0.833556 0.457577 -122.35295 REMARK 350 BIOMT2 43 -0.814847 0.480544 -0.324193 340.55790 REMARK 350 BIOMT3 43 -0.490119 -0.272509 0.827963 191.95659 REMARK 350 BIOMT1 44 -0.499219 0.365912 0.785423 70.01636 REMARK 350 BIOMT2 44 -0.302768 0.775652 -0.553801 223.56382 REMARK 350 BIOMT3 44 -0.811857 -0.514268 -0.276434 538.16815 REMARK 350 BIOMT1 45 -0.999487 0.032002 -0.001012 405.05699 REMARK 350 BIOMT2 45 0.032002 0.997492 -0.063137 7.13685 REMARK 350 BIOMT3 45 -0.001012 -0.063137 -0.998004 431.10209 REMARK 350 BIOMT1 46 -0.037691 0.054204 0.997818 -6.31248 REMARK 350 BIOMT2 46 -0.999176 -0.017113 -0.036812 419.01672 REMARK 350 BIOMT3 46 0.015080 -0.998383 0.054804 396.67905 REMARK 350 BIOMT1 47 -0.837635 -0.454325 0.303244 406.47851 REMARK 350 BIOMT2 47 -0.454325 0.271277 -0.848527 418.45725 REMARK 350 BIOMT3 47 0.303244 -0.848527 -0.433642 409.29989 REMARK 350 BIOMT1 48 -0.499219 -0.302768 -0.811857 539.55718 REMARK 350 BIOMT2 48 0.365912 0.775652 -0.514268 77.73516 REMARK 350 BIOMT3 48 0.785423 -0.553801 -0.276434 217.58519 REMARK 350 BIOMT1 49 0.509878 0.299428 -0.806453 209.01333 REMARK 350 BIOMT2 49 0.327995 0.798983 0.504029 -132.28320 REMARK 350 BIOMT3 49 0.795263 -0.521506 0.309173 86.47815 REMARK 350 BIOMT1 50 0.795118 0.520049 0.311988 -128.35267 REMARK 350 BIOMT2 50 -0.515675 0.309027 0.799113 78.64040 REMARK 350 BIOMT3 50 0.319165 -0.796274 0.513889 197.16425 REMARK 350 BIOMT1 51 0.824099 0.473933 0.310238 -124.61874 REMARK 350 BIOMT2 51 0.490887 -0.324243 -0.808638 336.14629 REMARK 350 BIOMT3 51 -0.282648 0.818690 -0.499856 206.39042 REMARK 350 BIOMT1 52 -0.006386 0.009648 0.999933 -4.18083 REMARK 350 BIOMT2 52 0.999850 0.016136 0.006230 -7.94198 REMARK 350 BIOMT3 52 -0.016075 0.999823 -0.009750 12.34411 REMARK 350 BIOMT1 53 -0.808824 -0.500194 0.309208 408.58320 REMARK 350 BIOMT2 53 0.479530 -0.256665 0.839151 -20.02046 REMARK 350 BIOMT3 53 -0.340375 0.827000 0.447455 18.34161 REMARK 350 BIOMT1 54 -0.474272 -0.351009 -0.807378 543.24749 REMARK 350 BIOMT2 54 -0.351009 -0.765644 0.539056 316.60290 REMARK 350 BIOMT3 54 -0.807378 0.539056 0.239916 216.09459 REMARK 350 BIOMT1 55 0.534930 0.251035 -0.806741 213.71057 REMARK 350 BIOMT2 55 -0.343990 -0.807410 -0.479334 536.72606 REMARK 350 BIOMT3 55 -0.771700 0.533921 -0.345554 332.31515 REMARK 350 BIOMT1 56 -0.286484 -0.821416 -0.493156 534.02726 REMARK 350 BIOMT2 56 0.781466 -0.498131 0.375733 63.69694 REMARK 350 BIOMT3 56 -0.554290 -0.277743 0.784615 215.28741 REMARK 350 BIOMT1 57 0.534930 -0.343990 -0.771700 326.75563 REMARK 350 BIOMT2 57 0.251035 -0.807410 0.533921 202.27915 REMARK 350 BIOMT3 57 -0.806741 -0.479334 -0.345554 544.51294 REMARK 350 BIOMT1 58 0.998515 -0.030594 0.045072 -2.93720 REMARK 350 BIOMT2 58 -0.030594 -0.999532 -0.000690 410.95906 REMARK 350 BIOMT3 58 0.045072 -0.000690 -0.998984 409.19357 REMARK 350 BIOMT1 59 0.463612 -0.314331 0.828408 0.57305 REMARK 350 BIOMT2 59 0.325782 -0.808991 -0.489285 401.34813 REMARK 350 BIOMT3 59 0.823972 0.496718 -0.272655 -3.66393 REMARK 350 BIOMT1 60 -0.330561 -0.803086 0.495765 332.43533 REMARK 350 BIOMT2 60 0.827662 -0.499109 -0.256642 186.72834 REMARK 350 BIOMT3 60 0.453546 0.325490 0.829670 -123.50452 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 14 REMARK 465 THR D 15 REMARK 465 GLY D 16 REMARK 465 LEU D 17 REMARK 465 ASN D 18 REMARK 465 ALA D 19 REMARK 465 SER D 20 REMARK 465 GLY D 21 REMARK 465 ARG D 22 REMARK 465 SER D 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER E 6 OG REMARK 470 ASN E 114 CB CG OD1 ND2 REMARK 470 ASN E 115 CB CG OD1 ND2 REMARK 470 ASP E 116 CB CG OD1 OD2 REMARK 470 GLU E 117 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 39 NE2 GLN A 41 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 77.02 -102.61 REMARK 500 ARG A 59 52.75 -95.40 REMARK 500 ASP A 85 -30.19 -130.25 REMARK 500 THR A 86 -6.00 66.61 REMARK 500 GLU A 108 31.60 -95.74 REMARK 500 THR A 164 56.18 37.64 REMARK 500 ALA A 191 140.12 -172.40 REMARK 500 TYR A 196 115.31 -164.26 REMARK 500 VAL A 249 77.08 50.95 REMARK 500 SER A 277 -169.53 -128.97 REMARK 500 ASN B 20 32.99 -93.77 REMARK 500 ASN B 30 -165.71 -161.80 REMARK 500 ASP B 57 -23.40 76.45 REMARK 500 PRO B 83 -156.72 -74.95 REMARK 500 ASP B 84 -4.63 81.66 REMARK 500 ALA B 104 147.13 -175.38 REMARK 500 CYS B 121 113.60 -162.04 REMARK 500 ASP B 138 64.32 -100.31 REMARK 500 PHE B 155 -179.15 -66.77 REMARK 500 ASN B 161 -168.57 -121.88 REMARK 500 SER B 168 41.67 -109.11 REMARK 500 LEU B 182 -9.90 -56.28 REMARK 500 LEU B 192 3.43 -62.87 REMARK 500 CYS B 197 143.23 -171.26 REMARK 500 PRO B 203 -175.16 -69.00 REMARK 500 SER B 232 -157.29 -126.02 REMARK 500 ASP B 234 33.07 -140.62 REMARK 500 ARG B 256 -169.18 -162.47 REMARK 500 SER C 16 42.09 -109.30 REMARK 500 ASN C 57 50.79 -93.05 REMARK 500 PRO C 89 4.19 -63.30 REMARK 500 ASN C 105 4.84 -67.22 REMARK 500 THR C 185 34.21 -95.87 REMARK 500 ASN C 189 141.83 -171.81 REMARK 500 LEU C 224 71.87 63.72 REMARK 500 ASP D 49 71.67 -160.18 REMARK 500 LYS D 63 -6.01 71.20 REMARK 500 LEU D 68 -167.48 -127.56 REMARK 500 PRO E 125 -179.63 -69.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SPH A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0856 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ECHOVIRUS 11 COMPLEXED WITH ITS ATTACHING REMARK 900 RECEPTOR CD55 AT PH 7.4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE VIRUS WAS ISOLATED FROM CHINA, AND THE GENEBANK: MN496161. DBREF 6LA5 A 3 287 PDB 6LA5 6LA5 3 287 DBREF 6LA5 B 11 261 PDB 6LA5 6LA5 11 261 DBREF 6LA5 C 1 238 PDB 6LA5 6LA5 1 238 DBREF 6LA5 D 1 69 PDB 6LA5 6LA5 1 69 DBREF 6LA5 E 5 129 UNP P08174 DAF_HUMAN 161 285 SEQRES 1 A 285 VAL VAL GLU ALA VAL GLU ASN ALA VAL ALA ARG VAL ALA SEQRES 2 A 285 ASP THR ILE SER SER GLY PRO SER ASN SER GLN ALA VAL SEQRES 3 A 285 PRO ALA LEU THR ALA VAL GLU THR GLY HIS THR SER GLN SEQRES 4 A 285 VAL THR PRO SER ASP THR ILE GLN THR ARG HIS VAL ARG SEQRES 5 A 285 ASN TYR HIS SER ARG SER GLU SER SER ILE GLU ASN PHE SEQRES 6 A 285 LEU CYS ARG SER ALA CYS VAL TYR MET GLY GLU TYR HIS SEQRES 7 A 285 THR THR ASN THR ASP THR SER LYS LEU PHE ALA SER TRP SEQRES 8 A 285 THR ILE ASN ALA ARG ARG MET VAL GLN MET ARG ARG LYS SEQRES 9 A 285 LEU GLU LEU PHE THR TYR VAL ARG PHE ASP MET GLU VAL SEQRES 10 A 285 THR PHE VAL ILE THR SER LYS GLN ASP GLN GLY THR GLN SEQRES 11 A 285 LEU GLY GLN ASP MET PRO PRO LEU THR HIS GLN ILE MET SEQRES 12 A 285 TYR ILE PRO PRO GLY GLY PRO ILE PRO LYS SER VAL THR SEQRES 13 A 285 ASP TYR THR TRP GLN THR SER THR ASN PRO SER ILE PHE SEQRES 14 A 285 TRP THR GLU GLY ASN ALA PRO PRO ARG MET SER ILE PRO SEQRES 15 A 285 PHE ILE SER ILE GLY ASN ALA TYR SER ASN PHE TYR ASP SEQRES 16 A 285 GLY TRP SER HIS PHE SER GLN ASN GLY VAL TYR GLY TYR SEQRES 17 A 285 ASN THR LEU ASN HIS MET GLY GLN ILE TYR VAL ARG HIS SEQRES 18 A 285 VAL ASN GLY SER SER PRO LEU PRO MET THR SER THR VAL SEQRES 19 A 285 ARG MET TYR PHE LYS PRO LYS HIS VAL LYS VAL TRP VAL SEQRES 20 A 285 PRO ARG PRO PRO ARG LEU CYS GLN TYR LYS ASN ALA SER SEQRES 21 A 285 THR VAL ASN PHE THR PRO THR ASN ILE THR GLU LYS ARG SEQRES 22 A 285 GLN SER ILE ASN TYR ILE PRO GLU THR VAL LYS PRO SEQRES 1 B 251 ASP ARG VAL ARG SER ILE THR LEU GLY ASN SER THR ILE SEQRES 2 B 251 THR THR GLN GLU SER ALA ASN VAL VAL VAL ALA TYR GLY SEQRES 3 B 251 ARG TRP PRO GLU TYR LEU LYS ASP ASN GLU ALA THR ALA SEQRES 4 B 251 GLU ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS ARG SEQRES 5 B 251 PHE TYR THR LEU GLU SER VAL THR TRP GLU ARG ASP SER SEQRES 6 B 251 PRO GLY TRP TRP TRP LYS PHE PRO ASP ALA LEU LYS ASP SEQRES 7 B 251 MET GLY LEU PHE GLY GLN ASN MET TYR TYR HIS TYR LEU SEQRES 8 B 251 GLY ARG ALA GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SEQRES 9 B 251 SER LYS PHE HIS GLN GLY CYS LEU MET VAL VAL CYS VAL SEQRES 10 B 251 PRO GLU ALA GLU MET GLY CYS SER GLN VAL ASP GLY THR SEQRES 11 B 251 VAL ASN GLU HIS SER LEU SER GLU GLY GLU THR ALA LYS SEQRES 12 B 251 LYS PHE ALA SER THR SER THR ASN GLY THR ASN THR VAL SEQRES 13 B 251 GLN SER ILE VAL THR ASN ALA GLY MET GLY VAL GLY VAL SEQRES 14 B 251 GLY ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN LEU SEQRES 15 B 251 ARG THR ASN ASN CYS ALA THR ILE VAL MET PRO TYR ILE SEQRES 16 B 251 ASN ASN VAL PRO MET ASP ASN MET PHE ARG HIS HIS ASN SEQRES 17 B 251 PHE THR LEU MET ILE ILE PRO PHE VAL PRO LEU ASP TYR SEQRES 18 B 251 SER SER ASP SER SER THR TYR VAL PRO ILE THR VAL THR SEQRES 19 B 251 VAL ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG LEU SEQRES 20 B 251 ALA THR SER LEU SEQRES 1 C 238 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 238 LEU THR SER ASP ASP PHE GLN SER PRO SER ALA MET PRO SEQRES 3 C 238 GLN PHE ASP VAL THR PRO GLU LEU ASN ILE PRO GLY GLU SEQRES 4 C 238 VAL GLN ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 238 VAL PRO VAL ASN ASN VAL GLU GLY LYS LEU ASP THR MET SEQRES 6 C 238 GLU ILE TYR ARG ILE PRO VAL GLN SER GLY ASN HIS GLN SEQRES 7 C 238 SER SER GLN VAL PHE GLY PHE GLN VAL GLN PRO GLY LEU SEQRES 8 C 238 ASP ASN VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR ALA HIS TRP SER GLY SER ILE LYS LEU THR SEQRES 10 C 238 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 238 LEU LEU ALA TYR ALA PRO PRO GLY ALA ASN ALA PRO LYS SEQRES 12 C 238 SER ARG LYS ASP ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 238 ASP VAL GLY LEU GLN SER SER CYS VAL LEU CYS ILE PRO SEQRES 14 C 238 TRP ILE SER GLN THR HIS TYR ARG LEU VAL GLN GLN ASP SEQRES 15 C 238 GLU TYR THR SER ALA GLY ASN VAL THR CYS TRP TYR GLN SEQRES 16 C 238 THR GLY ILE VAL VAL PRO ALA GLY THR PRO THR SER CYS SEQRES 17 C 238 SER ILE MET CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU LYS ASP THR PRO PHE ILE GLU GLN SER SEQRES 19 C 238 ALA LEU LEU GLN SEQRES 1 D 69 MET GLY ALA GLN VAL SER THR GLN LYS THR GLY ALA HIS SEQRES 2 D 69 GLU THR GLY LEU ASN ALA SER GLY ARG SER ILE ILE HIS SEQRES 3 D 69 TYR THR ASN ILE ASN TYR TYR LYS ASP ALA ALA SER ASN SEQRES 4 D 69 SER ALA ASN ARG GLN ASP PHE SER GLN ASP PRO GLY LYS SEQRES 5 D 69 PHE THR GLU PRO VAL LYS ASP ILE MET VAL LYS SER LEU SEQRES 6 D 69 PRO ALA LEU ASN SEQRES 1 E 125 LYS SER CYS PRO ASN PRO GLY GLU ILE ARG ASN GLY GLN SEQRES 2 E 125 ILE ASP VAL PRO GLY GLY ILE LEU PHE GLY ALA THR ILE SEQRES 3 E 125 SER PHE SER CYS ASN THR GLY TYR LYS LEU PHE GLY SER SEQRES 4 E 125 THR SER SER PHE CYS LEU ILE SER GLY SER SER VAL GLN SEQRES 5 E 125 TRP SER ASP PRO LEU PRO GLU CYS ARG GLU ILE TYR CYS SEQRES 6 E 125 PRO ALA PRO PRO GLN ILE ASP ASN GLY ILE ILE GLN GLY SEQRES 7 E 125 GLU ARG ASP HIS TYR GLY TYR ARG GLN SER VAL THR TYR SEQRES 8 E 125 ALA CYS ASN LYS GLY PHE THR MET ILE GLY GLU HIS SER SEQRES 9 E 125 ILE TYR CYS THR VAL ASN ASN ASP GLU GLY GLU TRP SER SEQRES 10 E 125 GLY PRO PRO PRO GLU CYS ARG GLY HET SPH A 301 18 HETNAM SPH SPHINGOSINE FORMUL 6 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 33 GLY A 37 5 5 HELIX 2 AA2 THR A 43 ILE A 48 1 6 HELIX 3 AA3 SER A 63 CYS A 69 1 7 HELIX 4 AA4 MET A 100 GLU A 108 1 9 HELIX 5 AA5 TYR A 160 THR A 164 5 5 HELIX 6 AA6 GLY A 209 ASN A 214 1 6 HELIX 7 AA7 LEU B 91 TYR B 98 1 8 HELIX 8 AA8 ILE B 169 ALA B 173 5 5 HELIX 9 AA9 GLY B 180 PHE B 185 5 6 HELIX 10 AB1 THR C 64 ARG C 69 5 6 HELIX 11 AB2 THR C 98 ASN C 105 1 8 HELIX 12 AB3 SER C 144 MET C 149 1 6 HELIX 13 AB4 ASP D 35 ASN D 39 5 5 HELIX 14 AB5 ASP D 49 PHE D 53 5 5 SHEET 1 AA1 3 VAL A 4 ALA A 6 0 SHEET 2 AA1 3 ALA D 3 THR D 7 1 O VAL D 5 N GLU A 5 SHEET 3 AA1 3 HIS D 26 ASN D 29 -1 O TYR D 27 N SER D 6 SHEET 1 AA2 5 LEU A 31 THR A 32 0 SHEET 2 AA2 5 SER C 163 ILE C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA2 5 ILE C 114 PHE C 120 -1 N LEU C 116 O LEU C 166 SHEET 4 AA2 5 SER C 207 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA2 5 ILE C 70 GLN C 73 -1 N VAL C 72 O CYS C 208 SHEET 1 AA3 4 ALA A 72 HIS A 80 0 SHEET 2 AA3 4 MET A 232 PRO A 250 -1 O MET A 238 N VAL A 74 SHEET 3 AA3 4 PHE A 110 GLN A 127 -1 N THR A 120 O TYR A 239 SHEET 4 AA3 4 TYR A 192 SER A 193 -1 O TYR A 192 N VAL A 113 SHEET 1 AA4 4 ARG A 180 ILE A 183 0 SHEET 2 AA4 4 PHE A 110 GLN A 127 -1 N MET A 117 O ILE A 183 SHEET 3 AA4 4 MET A 232 PRO A 250 -1 O TYR A 239 N THR A 120 SHEET 4 AA4 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 247 SHEET 1 AA5 4 PHE A 90 THR A 94 0 SHEET 2 AA5 4 GLN A 218 HIS A 223 -1 O VAL A 221 N ALA A 91 SHEET 3 AA5 4 THR A 141 ILE A 147 -1 N MET A 145 O TYR A 220 SHEET 4 AA5 4 SER A 169 THR A 173 -1 O TRP A 172 N HIS A 142 SHEET 1 AA6 2 ARG B 14 LEU B 18 0 SHEET 2 AA6 2 SER B 21 THR B 25 -1 O SER B 21 N LEU B 18 SHEET 1 AA7 5 VAL B 32 VAL B 33 0 SHEET 2 AA7 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA7 5 HIS B 99 GLN B 111 -1 N ILE B 108 O ILE B 200 SHEET 4 AA7 5 PRO B 240 LEU B 255 -1 O GLY B 254 N TYR B 100 SHEET 5 AA7 5 TYR B 64 THR B 70 -1 N VAL B 69 O ILE B 241 SHEET 1 AA8 5 LYS B 153 LYS B 154 0 SHEET 2 AA8 5 TRP B 78 PHE B 82 -1 N TRP B 79 O LYS B 153 SHEET 3 AA8 5 PHE B 219 VAL B 227 -1 O PHE B 219 N PHE B 82 SHEET 4 AA8 5 CYS B 121 PRO B 128 -1 N VAL B 127 O THR B 220 SHEET 5 AA8 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AA9 4 PHE C 83 GLN C 86 0 SHEET 2 AA9 4 ASN C 189 TYR C 194 -1 O VAL C 190 N PHE C 85 SHEET 3 AA9 4 LYS C 129 ALA C 135 -1 N LEU C 131 O TRP C 193 SHEET 4 AA9 4 THR C 152 ASP C 157 -1 O ILE C 154 N LEU C 132 SHEET 1 AB1 3 ARG C 177 LEU C 178 0 SHEET 2 AB1 3 TYR C 107 SER C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB1 3 SER C 221 LEU C 225 -1 O SER C 221 N SER C 111 SHEET 1 AB2 4 GLY E 16 ASP E 19 0 SHEET 2 AB2 4 THR E 29 CYS E 34 -1 O SER E 31 N ASP E 19 SHEET 3 AB2 4 SER E 45 SER E 51 -1 O SER E 46 N ILE E 30 SHEET 4 AB2 4 SER E 54 TRP E 57 -1 O SER E 54 N SER E 51 SHEET 1 AB3 2 TYR E 38 PHE E 41 0 SHEET 2 AB3 2 GLU E 63 GLU E 66 -1 O ARG E 65 N LYS E 39 SHEET 1 AB4 3 GLY E 78 ILE E 80 0 SHEET 2 AB4 3 SER E 92 CYS E 97 -1 O ALA E 96 N ILE E 79 SHEET 3 AB4 3 SER E 108 TYR E 110 -1 O ILE E 109 N VAL E 93 SHEET 1 AB5 2 THR E 102 ILE E 104 0 SHEET 2 AB5 2 GLU E 126 ARG E 128 -1 O ARG E 128 N THR E 102 SHEET 1 AB6 2 THR E 112 ASN E 114 0 SHEET 2 AB6 2 GLU E 117 GLU E 119 -1 O GLU E 119 N THR E 112 SSBOND 1 CYS E 7 CYS E 48 1555 1555 2.02 SSBOND 2 CYS E 34 CYS E 64 1555 1555 2.03 SSBOND 3 CYS E 69 CYS E 111 1555 1555 2.03 SSBOND 4 CYS E 97 CYS E 127 1555 1555 2.03 CISPEP 1 PHE B 82 PRO B 83 0 -7.38 SITE 1 AC1 7 ILE A 95 PHE A 115 MET A 117 ILE A 183 SITE 2 AC1 7 ILE A 186 ASN A 194 MET A 216 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000