HEADER DNA BINDING PROTEIN/DNA 12-NOV-19 6LAE TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN XPA IN COMPLEX TITLE 2 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XERODERMA PIGMENTOSUM GROUP A-COMPLEMENTING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*GP*CP*AP*TP*CP*TP*CP*GP*CP*CP*T)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*TP*GP*GP*CP*GP*AP*GP*AP*TP*GP*C)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: XPA, XPAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX, NUCLEOTIDE EXCISION REPAIR, DNA REPAIR, DNA KEYWDS 2 BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.M.LIAN,X.YANG,Y.L.JIANG,F.YANG,C.LI,W.YANG,C.QIAN REVDAT 2 22-NOV-23 6LAE 1 REMARK REVDAT 1 26-FEB-20 6LAE 0 JRNL AUTH F.M.LIAN,X.YANG,Y.L.JIANG,F.YANG,C.LI,W.YANG,C.QIAN JRNL TITL NEW STRUCTURAL INSIGHTS INTO THE RECOGNITION OF UNDAMAGED JRNL TITL 2 SPLAYED-ARM DNA WITH A SINGLE PAIR OF NON-COMPLEMENTARY JRNL TITL 3 NUCLEOTIDES BY HUMAN NUCLEOTIDE EXCISION REPAIR PROTEIN XPA. JRNL REF INT.J.BIOL.MACROMOL. V. 148 466 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 31962067 JRNL DOI 10.1016/J.IJBIOMAC.2020.01.169 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 7335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.4490 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1940 REMARK 3 NUCLEIC ACID ATOMS : 450 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 18.60000 REMARK 3 B22 (A**2) : 18.60000 REMARK 3 B33 (A**2) : -37.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2478 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2091 ; 0.032 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3414 ; 1.701 ; 1.544 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4917 ; 2.316 ; 1.765 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 7.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.305 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;15.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.788 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2408 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 486 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 1 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6LAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97775 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6J44 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 20% 2-PROPANOL, 0.1 MM REMARK 280 SODIUM CITRATE TRIBASIC PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.31267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.62533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 HIS A 97 REMARK 465 MET A 98 REMARK 465 GLU A 99 REMARK 465 PHE A 100 REMARK 465 LYS A 217 REMARK 465 LYS A 218 REMARK 465 PHE A 219 REMARK 465 ASP A 220 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 VAL A 223 REMARK 465 LYS A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 226 REMARK 465 ARG A 227 REMARK 465 ARG A 228 REMARK 465 ALA A 229 REMARK 465 VAL A 230 REMARK 465 ARG A 231 REMARK 465 SER A 232 REMARK 465 SER A 233 REMARK 465 VAL A 234 REMARK 465 TRP A 235 REMARK 465 LYS A 236 REMARK 465 ARG A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 GLY B 95 REMARK 465 SER B 96 REMARK 465 HIS B 97 REMARK 465 MET B 98 REMARK 465 GLU B 99 REMARK 465 PHE B 100 REMARK 465 LYS B 217 REMARK 465 LYS B 218 REMARK 465 PHE B 219 REMARK 465 ASP B 220 REMARK 465 LYS B 221 REMARK 465 LYS B 222 REMARK 465 VAL B 223 REMARK 465 LYS B 224 REMARK 465 GLU B 225 REMARK 465 LEU B 226 REMARK 465 ARG B 227 REMARK 465 ARG B 228 REMARK 465 ALA B 229 REMARK 465 VAL B 230 REMARK 465 ARG B 231 REMARK 465 SER B 232 REMARK 465 SER B 233 REMARK 465 VAL B 234 REMARK 465 TRP B 235 REMARK 465 LYS B 236 REMARK 465 ARG B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 124 74.62 -69.13 REMARK 500 ASP A 134 -99.53 -119.63 REMARK 500 HIS A 136 32.20 -96.58 REMARK 500 HIS A 171 14.23 52.15 REMARK 500 ASP B 134 -101.04 -124.24 REMARK 500 HIS B 136 30.26 -99.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 CYS A 108 SG 108.9 REMARK 620 3 CYS A 126 SG 130.9 100.0 REMARK 620 4 CYS A 129 SG 118.2 91.0 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 105 SG REMARK 620 2 CYS B 108 SG 104.0 REMARK 620 3 CYS B 126 SG 133.5 100.0 REMARK 620 4 CYS B 129 SG 120.1 84.9 101.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 DBREF 6LAE A 98 239 UNP P23025 XPA_HUMAN 98 239 DBREF 6LAE B 98 239 UNP P23025 XPA_HUMAN 98 239 DBREF 6LAE C 1 11 PDB 6LAE 6LAE 1 11 DBREF 6LAE D 1 11 PDB 6LAE 6LAE 1 11 SEQADV 6LAE GLY A 95 UNP P23025 EXPRESSION TAG SEQADV 6LAE SER A 96 UNP P23025 EXPRESSION TAG SEQADV 6LAE HIS A 97 UNP P23025 EXPRESSION TAG SEQADV 6LAE GLY B 95 UNP P23025 EXPRESSION TAG SEQADV 6LAE SER B 96 UNP P23025 EXPRESSION TAG SEQADV 6LAE HIS B 97 UNP P23025 EXPRESSION TAG SEQRES 1 A 145 GLY SER HIS MET GLU PHE ASP TYR VAL ILE CYS GLU GLU SEQRES 2 A 145 CYS GLY LYS GLU PHE MET ASP SER TYR LEU MET ASN HIS SEQRES 3 A 145 PHE ASP LEU PRO THR CYS ASP ASN CYS ARG ASP ALA ASP SEQRES 4 A 145 ASP LYS HIS LYS LEU ILE THR LYS THR GLU ALA LYS GLN SEQRES 5 A 145 GLU TYR LEU LEU LYS ASP CYS ASP LEU GLU LYS ARG GLU SEQRES 6 A 145 PRO PRO LEU LYS PHE ILE VAL LYS LYS ASN PRO HIS HIS SEQRES 7 A 145 SER GLN TRP GLY ASP MET LYS LEU TYR LEU LYS LEU GLN SEQRES 8 A 145 ILE VAL LYS ARG SER LEU GLU VAL TRP GLY SER GLN GLU SEQRES 9 A 145 ALA LEU GLU GLU ALA LYS GLU VAL ARG GLN GLU ASN ARG SEQRES 10 A 145 GLU LYS MET LYS GLN LYS LYS PHE ASP LYS LYS VAL LYS SEQRES 11 A 145 GLU LEU ARG ARG ALA VAL ARG SER SER VAL TRP LYS ARG SEQRES 12 A 145 GLU THR SEQRES 1 B 145 GLY SER HIS MET GLU PHE ASP TYR VAL ILE CYS GLU GLU SEQRES 2 B 145 CYS GLY LYS GLU PHE MET ASP SER TYR LEU MET ASN HIS SEQRES 3 B 145 PHE ASP LEU PRO THR CYS ASP ASN CYS ARG ASP ALA ASP SEQRES 4 B 145 ASP LYS HIS LYS LEU ILE THR LYS THR GLU ALA LYS GLN SEQRES 5 B 145 GLU TYR LEU LEU LYS ASP CYS ASP LEU GLU LYS ARG GLU SEQRES 6 B 145 PRO PRO LEU LYS PHE ILE VAL LYS LYS ASN PRO HIS HIS SEQRES 7 B 145 SER GLN TRP GLY ASP MET LYS LEU TYR LEU LYS LEU GLN SEQRES 8 B 145 ILE VAL LYS ARG SER LEU GLU VAL TRP GLY SER GLN GLU SEQRES 9 B 145 ALA LEU GLU GLU ALA LYS GLU VAL ARG GLN GLU ASN ARG SEQRES 10 B 145 GLU LYS MET LYS GLN LYS LYS PHE ASP LYS LYS VAL LYS SEQRES 11 B 145 GLU LEU ARG ARG ALA VAL ARG SER SER VAL TRP LYS ARG SEQRES 12 B 145 GLU THR SEQRES 1 C 11 DG DC DA DT DC DT DC DG DC DC DT SEQRES 1 D 11 DT DG DG DC DG DA DG DA DT DG DC HET ZN A 301 1 HET ZN B 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 SER A 115 PHE A 121 1 7 HELIX 2 AA2 LYS A 141 LEU A 149 1 9 HELIX 3 AA3 LYS A 151 LYS A 157 1 7 HELIX 4 AA4 LYS A 183 GLY A 195 1 13 HELIX 5 AA5 GLN A 197 GLN A 216 1 20 HELIX 6 AA6 SER B 115 HIS B 120 1 6 HELIX 7 AA7 LYS B 141 LEU B 149 1 9 HELIX 8 AA8 LYS B 151 LYS B 157 1 7 HELIX 9 AA9 LYS B 183 GLY B 195 1 13 HELIX 10 AB1 SER B 196 LYS B 215 1 20 SHEET 1 AA1 2 VAL A 103 ILE A 104 0 SHEET 2 AA1 2 GLU A 111 PHE A 112 -1 O PHE A 112 N VAL A 103 SHEET 1 AA2 3 LEU A 138 THR A 140 0 SHEET 2 AA2 3 MET A 178 LEU A 182 -1 O TYR A 181 N ILE A 139 SHEET 3 AA2 3 ILE A 165 LYS A 167 -1 N ILE A 165 O LEU A 180 SHEET 1 AA3 2 VAL B 103 ILE B 104 0 SHEET 2 AA3 2 GLU B 111 PHE B 112 -1 O PHE B 112 N VAL B 103 SHEET 1 AA4 3 LEU B 138 THR B 140 0 SHEET 2 AA4 3 MET B 178 LEU B 182 -1 O TYR B 181 N ILE B 139 SHEET 3 AA4 3 ILE B 165 LYS B 167 -1 N ILE B 165 O LEU B 180 LINK SG CYS A 105 ZN ZN A 301 1555 1555 2.07 LINK SG CYS A 108 ZN ZN A 301 1555 1555 2.60 LINK SG CYS A 126 ZN ZN A 301 1555 1555 2.29 LINK SG CYS A 129 ZN ZN A 301 1555 1555 2.08 LINK SG CYS B 105 ZN ZN B 301 1555 1555 2.29 LINK SG CYS B 108 ZN ZN B 301 1555 1555 2.39 LINK SG CYS B 126 ZN ZN B 301 1555 1555 2.14 LINK SG CYS B 129 ZN ZN B 301 1555 1555 2.40 CISPEP 1 GLU A 159 PRO A 160 0 -8.88 CISPEP 2 GLU B 159 PRO B 160 0 0.30 SITE 1 AC1 4 CYS A 105 CYS A 108 CYS A 126 CYS A 129 SITE 1 AC2 4 CYS B 105 CYS B 108 CYS B 126 CYS B 129 CRYST1 69.112 69.112 63.938 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014469 0.008354 0.000000 0.00000 SCALE2 0.000000 0.016708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015640 0.00000