HEADER VIRUS 12-NOV-19 6LAO TITLE CRYO-EM STRUCTURE OF ECHOVIRUS 11 COMPLEXED WITH ITS ATTACHING TITLE 2 RECEPTOR CD55 AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CAPSID PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: CAPSID PROTEIN VP4; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 3 ORGANISM_TAXID: 12078; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 6 ORGANISM_TAXID: 12078; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 9 ORGANISM_TAXID: 12078; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 12 ORGANISM_TAXID: 12078 KEYWDS VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR S.LIU,F.G.GAO REVDAT 3 27-MAR-24 6LAO 1 REMARK REVDAT 2 28-OCT-20 6LAO 1 KEYWDS REVDAT 1 07-OCT-20 6LAO 0 JRNL AUTH S.NIU,C.LIU,C.LIU,S.LIU,Y.SONG,Y.ZHANG,W.TIAN,X.ZHAO,P.WANG, JRNL AUTH 2 F.G.GAO JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF ECHOVIRUS 11 INFECTION BY JRNL TITL 2 USING THE DUAL-RECEPTOR SYSTEM OF CD55 AND FCRN. JRNL REF CHIN.SCI.BULL. 2020 JRNL REFN ISSN 1001-6538 JRNL DOI 10.1360/TB-2019-0786 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.640 REMARK 3 NUMBER OF PARTICLES : 19771 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6LAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014473. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ECHOVIRUS E11 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 102.50 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.509440 0.326684 0.796083 -140.96228 REMARK 350 BIOMT2 2 0.300351 0.799444 -0.520267 93.70343 REMARK 350 BIOMT3 2 -0.806387 0.504149 0.309149 218.46541 REMARK 350 BIOMT1 3 -0.284302 0.828936 0.481702 -8.24607 REMARK 350 BIOMT2 3 0.812661 0.474939 -0.337661 12.61560 REMARK 350 BIOMT3 3 -0.508679 0.295463 -0.808670 446.91455 REMARK 350 BIOMT1 4 -0.284302 0.812661 -0.508679 214.73933 REMARK 350 BIOMT2 4 0.828936 0.474939 0.295463 -131.20286 REMARK 350 BIOMT3 4 0.481702 -0.337661 -0.808670 369.63846 REMARK 350 BIOMT1 5 0.509440 0.300351 -0.806387 219.83568 REMARK 350 BIOMT2 5 0.326684 0.799444 0.504149 -138.99974 REMARK 350 BIOMT3 5 0.796083 -0.520267 0.309149 93.43008 REMARK 350 BIOMT1 6 -0.807523 0.508343 0.299155 215.27081 REMARK 350 BIOMT2 6 0.508343 0.342565 0.790087 -142.54272 REMARK 350 BIOMT3 6 0.299155 0.790087 -0.535042 103.71207 REMARK 350 BIOMT1 7 -0.499938 0.293406 -0.814846 442.08959 REMARK 350 BIOMT2 7 -0.275256 0.838250 0.470713 -9.49374 REMARK 350 BIOMT3 7 0.821155 0.459619 -0.338312 18.68829 REMARK 350 BIOMT1 8 0.490518 -0.339564 -0.802551 362.03940 REMARK 350 BIOMT2 8 -0.268034 0.817522 -0.509721 210.68834 REMARK 350 BIOMT3 8 0.829186 0.465138 0.309994 -127.90521 REMARK 350 BIOMT1 9 0.795068 -0.515824 0.319049 85.74688 REMARK 350 BIOMT2 9 0.520028 0.309026 -0.796287 213.71936 REMARK 350 BIOMT3 9 0.312150 0.799017 0.513940 -133.48119 REMARK 350 BIOMT1 10 -0.007165 0.008211 0.999941 -4.96110 REMARK 350 BIOMT2 10 0.999855 0.015486 0.007038 -4.58944 REMARK 350 BIOMT3 10 -0.015428 0.999846 -0.008321 9.66616 REMARK 350 BIOMT1 11 -0.454060 0.289222 -0.842722 439.22667 REMARK 350 BIOMT2 11 0.289222 -0.846780 -0.446447 437.21900 REMARK 350 BIOMT3 11 -0.842722 -0.446447 0.300840 434.59710 REMARK 350 BIOMT1 12 0.535111 -0.341975 -0.772469 346.22753 REMARK 350 BIOMT2 12 0.253020 -0.807545 0.532777 219.57019 REMARK 350 BIOMT3 12 -0.806000 -0.480545 -0.345600 577.27852 REMARK 350 BIOMT1 13 0.792804 -0.488017 0.365103 69.99494 REMARK 350 BIOMT2 13 -0.543273 -0.294331 0.786272 224.62756 REMARK 350 BIOMT3 13 -0.276253 -0.821711 -0.498473 570.36373 REMARK 350 BIOMT1 14 -0.037105 0.052920 0.997909 -7.72704 REMARK 350 BIOMT2 14 -0.999207 -0.016381 -0.036284 445.40201 REMARK 350 BIOMT3 14 0.014427 -0.998464 0.053486 423.40873 REMARK 350 BIOMT1 15 -0.807709 0.533280 0.251432 220.47071 REMARK 350 BIOMT2 15 -0.484697 -0.357813 -0.798147 576.79074 REMARK 350 BIOMT3 15 -0.335670 -0.766539 0.547489 339.50034 REMARK 350 BIOMT1 16 0.261584 -0.797564 0.543567 212.85387 REMARK 350 BIOMT2 16 -0.797564 -0.495785 -0.343639 573.88024 REMARK 350 BIOMT3 16 0.543567 -0.343639 -0.765798 348.02225 REMARK 350 BIOMT1 17 -0.544613 -0.278114 0.791233 219.99651 REMARK 350 BIOMT2 17 -0.278114 -0.830150 -0.483222 564.77663 REMARK 350 BIOMT3 17 0.791233 -0.483222 0.374763 71.89919 REMARK 350 BIOMT1 18 -0.999019 -0.001354 -0.044254 443.56309 REMARK 350 BIOMT2 18 -0.001354 -0.998130 0.061110 420.62501 REMARK 350 BIOMT3 18 -0.044254 0.061110 0.997150 -3.04165 REMARK 350 BIOMT1 19 -0.473661 -0.349757 -0.808279 574.59219 REMARK 350 BIOMT2 19 -0.349757 -0.767584 0.537109 340.63802 REMARK 350 BIOMT3 19 -0.808279 0.537109 0.241245 226.76542 REMARK 350 BIOMT1 20 0.305435 -0.841842 -0.444986 432.00606 REMARK 350 BIOMT2 20 -0.841842 -0.457118 0.286960 435.35496 REMARK 350 BIOMT3 20 -0.444986 0.286960 -0.848317 443.73484 REMARK 350 BIOMT1 21 0.823422 0.474256 0.311541 -133.72287 REMARK 350 BIOMT2 21 0.492131 -0.323581 -0.808147 359.76021 REMARK 350 BIOMT3 21 -0.282460 0.818765 -0.499840 215.80101 REMARK 350 BIOMT1 22 0.310704 0.805203 0.505085 -137.29388 REMARK 350 BIOMT2 22 0.805203 -0.505341 0.310288 83.51537 REMARK 350 BIOMT3 22 0.505085 0.310288 -0.805364 223.14051 REMARK 350 BIOMT1 23 -0.007165 0.999855 -0.015428 4.70236 REMARK 350 BIOMT2 23 0.008211 0.015486 0.999846 -9.55287 REMARK 350 BIOMT3 23 0.999941 0.007038 -0.008321 5.07353 REMARK 350 BIOMT1 24 0.309097 0.789210 -0.530666 96.03187 REMARK 350 BIOMT2 24 -0.797429 0.519135 0.307582 209.17264 REMARK 350 BIOMT3 24 0.518234 0.328096 0.789802 -137.03876 REMARK 350 BIOMT1 25 0.822428 0.464372 -0.328588 10.48038 REMARK 350 BIOMT2 25 -0.498350 0.309579 -0.809820 437.42068 REMARK 350 BIOMT3 25 -0.274334 0.829771 0.486026 -6.80202 REMARK 350 BIOMT1 26 -0.330649 0.827188 0.454347 8.24455 REMARK 350 BIOMT2 26 -0.803659 -0.499183 0.323958 428.01124 REMARK 350 BIOMT3 26 0.494777 -0.258023 0.829831 -13.55285 REMARK 350 BIOMT1 27 -0.286379 0.782332 -0.553122 231.62296 REMARK 350 BIOMT2 27 -0.820582 -0.498288 -0.279919 565.29540 REMARK 350 BIOMT3 27 -0.494604 0.373719 0.784666 73.81405 REMARK 350 BIOMT1 28 0.535111 0.253020 -0.806000 224.46077 REMARK 350 BIOMT2 28 -0.341975 -0.807545 -0.480545 573.12252 REMARK 350 BIOMT3 28 -0.772469 0.532777 -0.345600 349.97573 REMARK 350 BIOMT1 29 0.998550 -0.029257 0.045181 -3.34413 REMARK 350 BIOMT2 29 -0.029257 -0.999572 -0.000661 440.67578 REMARK 350 BIOMT3 29 0.045181 -0.000661 -0.998979 433.28613 REMARK 350 BIOMT1 30 0.463481 0.325599 0.824118 -136.97311 REMARK 350 BIOMT2 30 -0.314593 -0.808993 0.496549 350.99208 REMARK 350 BIOMT3 30 0.828382 -0.489403 -0.272522 208.61311 REMARK 350 BIOMT1 31 -0.499260 -0.302526 -0.811922 570.69455 REMARK 350 BIOMT2 31 0.363999 0.777132 -0.513390 83.22299 REMARK 350 BIOMT3 31 0.786285 -0.551855 -0.277872 232.48748 REMARK 350 BIOMT1 32 0.309517 -0.814283 -0.491064 435.34683 REMARK 350 BIOMT2 32 0.832839 0.481361 -0.273257 -7.42528 REMARK 350 BIOMT3 32 0.458888 -0.324400 0.827156 9.23489 REMARK 350 BIOMT1 33 0.309097 -0.797429 0.518234 208.13519 REMARK 350 BIOMT2 33 0.789210 0.519135 0.328096 -139.41626 REMARK 350 BIOMT3 33 -0.530666 0.307582 0.789802 94.85666 REMARK 350 BIOMT1 34 -0.499938 -0.275256 0.821155 203.05840 REMARK 350 BIOMT2 34 0.293406 0.838250 0.459619 -130.34290 REMARK 350 BIOMT3 34 -0.814846 0.470713 -0.338312 371.02642 REMARK 350 BIOMT1 35 -0.999531 0.030611 -0.000926 427.13240 REMARK 350 BIOMT2 35 0.030611 0.997702 -0.060448 7.25573 REMARK 350 BIOMT3 35 -0.000926 -0.060448 -0.998171 456.08694 REMARK 350 BIOMT1 36 0.006487 -0.998919 0.046034 422.13513 REMARK 350 BIOMT2 36 -0.052472 0.045632 0.997579 -2.43793 REMARK 350 BIOMT3 36 -0.998601 -0.008887 -0.052119 451.59578 REMARK 350 BIOMT1 37 -0.333842 -0.773253 0.539101 337.67545 REMARK 350 BIOMT2 37 -0.817461 0.522267 0.242889 227.17103 REMARK 350 BIOMT3 37 -0.469369 -0.359607 -0.806459 580.14198 REMARK 350 BIOMT1 38 -0.837043 -0.455446 0.303195 430.05305 REMARK 350 BIOMT2 38 -0.455446 0.272924 -0.847397 444.40313 REMARK 350 BIOMT3 38 0.303195 -0.847397 -0.435881 436.42550 REMARK 350 BIOMT1 39 -0.807709 -0.484697 -0.335670 571.60522 REMARK 350 BIOMT2 39 0.533280 -0.357813 -0.766539 349.05100 REMARK 350 BIOMT3 39 0.251432 -0.798147 0.547489 219.05764 REMARK 350 BIOMT1 40 -0.286379 -0.820582 -0.494604 566.71168 REMARK 350 BIOMT2 40 0.782332 -0.498288 0.373719 72.88803 REMARK 350 BIOMT3 40 -0.553122 -0.279919 0.784666 228.43339 REMARK 350 BIOMT1 41 0.823422 0.492131 -0.282460 -5.98376 REMARK 350 BIOMT2 41 0.474256 -0.323581 0.818765 3.14032 REMARK 350 BIOMT3 41 0.311541 -0.808147 -0.499840 440.26540 REMARK 350 BIOMT1 42 0.795068 0.520028 0.312150 -137.64852 REMARK 350 BIOMT2 42 -0.515824 0.309026 0.799017 84.83921 REMARK 350 BIOMT3 42 0.319049 -0.796287 0.513940 211.42591 REMARK 350 BIOMT1 43 0.309517 0.832839 0.458888 -132.80074 REMARK 350 BIOMT2 43 -0.814283 0.481361 -0.324400 361.06536 REMARK 350 BIOMT3 43 -0.491064 -0.273257 0.827156 204.11528 REMARK 350 BIOMT1 44 0.037783 0.998271 -0.045033 1.86011 REMARK 350 BIOMT2 44 -0.008659 -0.044737 -0.998961 450.08362 REMARK 350 BIOMT3 44 -0.999248 0.038133 0.006954 428.43655 REMARK 350 BIOMT1 45 0.355394 0.787701 -0.503212 80.23732 REMARK 350 BIOMT2 45 0.787701 -0.542219 -0.292447 228.87378 REMARK 350 BIOMT3 45 -0.503212 -0.292447 -0.813175 574.38536 REMARK 350 BIOMT1 46 -0.499260 0.363999 0.786285 71.83064 REMARK 350 BIOMT2 46 -0.302526 0.777132 -0.551855 236.27384 REMARK 350 BIOMT3 46 -0.811922 -0.513390 -0.277872 570.68712 REMARK 350 BIOMT1 47 -0.779066 0.524302 -0.343750 348.09151 REMARK 350 BIOMT2 47 0.524302 0.244227 -0.815758 231.17741 REMARK 350 BIOMT3 47 -0.343750 -0.815758 -0.465161 576.32560 REMARK 350 BIOMT1 48 0.037783 -0.008659 -0.999248 431.94173 REMARK 350 BIOMT2 48 0.998271 -0.044737 0.038133 1.94067 REMARK 350 BIOMT3 48 -0.045033 -0.998961 0.006954 446.72048 REMARK 350 BIOMT1 49 0.822428 -0.498350 -0.274334 207.50315 REMARK 350 BIOMT2 49 0.464372 0.309579 0.829771 -134.63901 REMARK 350 BIOMT3 49 -0.328588 -0.809820 0.486026 360.98163 REMARK 350 BIOMT1 50 0.490518 -0.268034 0.829187 -15.05774 REMARK 350 BIOMT2 50 -0.339564 0.817522 0.465138 10.18686 REMARK 350 BIOMT3 50 -0.802551 -0.509721 0.309994 437.59723 REMARK 350 BIOMT1 51 0.006487 -0.052472 -0.998601 448.09777 REMARK 350 BIOMT2 51 -0.998919 0.045632 -0.008887 425.80329 REMARK 350 BIOMT3 51 0.046034 0.997579 -0.052119 6.53605 REMARK 350 BIOMT1 52 0.792804 -0.543273 -0.276253 224.10668 REMARK 350 BIOMT2 52 -0.488017 -0.294331 -0.821711 568.94751 REMARK 350 BIOMT3 52 0.365103 0.786272 -0.498473 82.13738 REMARK 350 BIOMT1 53 0.463481 -0.314593 0.828382 1.09284 REMARK 350 BIOMT2 53 0.325599 -0.808993 -0.489403 430.64439 REMARK 350 BIOMT3 53 0.824118 0.496549 -0.272522 -4.55120 REMARK 350 BIOMT1 54 -0.526369 0.317540 0.788736 87.25379 REMARK 350 BIOMT2 54 0.317540 -0.787109 0.528798 202.02415 REMARK 350 BIOMT3 54 0.788736 0.528798 0.313478 -133.72901 REMARK 350 BIOMT1 55 -0.808807 0.479540 -0.340402 363.51803 REMARK 350 BIOMT2 55 -0.501057 -0.258922 0.825773 199.03218 REMARK 350 BIOMT3 55 0.307854 0.838451 0.449695 -126.87671 REMARK 350 BIOMT1 56 -0.330649 -0.803659 0.494777 353.40671 REMARK 350 BIOMT2 56 0.827188 -0.499183 -0.258023 203.33907 REMARK 350 BIOMT3 56 0.454347 0.323958 0.829831 -131.15715 REMARK 350 BIOMT1 57 -0.808807 -0.501057 0.307854 432.80169 REMARK 350 BIOMT2 57 0.479540 -0.258922 0.838451 -16.40761 REMARK 350 BIOMT3 57 -0.340402 0.825773 0.449695 16.44254 REMARK 350 BIOMT1 58 -0.810780 -0.509587 -0.288021 567.11752 REMARK 350 BIOMT2 58 -0.509587 0.372369 0.775669 74.90610 REMARK 350 BIOMT3 58 -0.288021 0.775669 -0.561588 240.04687 REMARK 350 BIOMT1 59 -0.333842 -0.817461 -0.469369 570.73430 REMARK 350 BIOMT2 59 -0.773253 0.522267 -0.359607 351.08775 REMARK 350 BIOMT3 59 0.539101 0.242889 -0.806459 230.64225 REMARK 350 BIOMT1 60 -0.037105 -0.999207 0.014427 438.65376 REMARK 350 BIOMT2 60 0.052920 -0.016381 -0.998464 430.46369 REMARK 350 BIOMT3 60 0.997909 -0.036284 0.053486 1.22555 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 14 REMARK 465 THR D 15 REMARK 465 GLY D 16 REMARK 465 LEU D 17 REMARK 465 ASN D 18 REMARK 465 ALA D 19 REMARK 465 SER D 20 REMARK 465 GLY D 21 REMARK 465 ARG D 22 REMARK 465 SER D 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 228 O LEU A 230 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 59.30 -101.41 REMARK 500 ARG A 59 47.97 -93.35 REMARK 500 THR A 86 -6.61 66.79 REMARK 500 SER A 227 -155.39 -157.74 REMARK 500 SER A 228 73.19 68.49 REMARK 500 VAL A 249 78.53 56.48 REMARK 500 ASN B 30 -167.38 -167.97 REMARK 500 ASP B 57 -20.35 76.44 REMARK 500 PRO B 83 -157.70 -74.47 REMARK 500 ASP B 84 -9.26 85.83 REMARK 500 ASN B 164 -1.68 72.75 REMARK 500 ALA B 173 19.83 58.33 REMARK 500 LEU B 182 -8.66 -58.28 REMARK 500 SER B 232 -163.83 -125.23 REMARK 500 ASN C 56 57.58 -94.62 REMARK 500 LEU C 224 72.91 64.56 REMARK 500 ASP D 49 70.75 -154.24 REMARK 500 PRO D 56 59.31 -91.14 REMARK 500 LYS D 63 -10.52 80.71 REMARK 500 LEU D 68 -169.30 -125.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0859 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ECHOVIRUS 11 COMPLEXED WITH ITS ATTACHING REMARK 900 RECEPTOR CD55 AT PH 5.5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE VIRUS WAS ISOLATED FROM CHINA, AND THE GENEBANK: MN496161. DBREF 6LAO A 3 287 PDB 6LAO 6LAO 3 287 DBREF 6LAO B 11 261 PDB 6LAO 6LAO 11 261 DBREF 6LAO C 1 238 PDB 6LAO 6LAO 1 238 DBREF 6LAO D 1 69 PDB 6LAO 6LAO 1 69 SEQRES 1 A 285 VAL VAL GLU ALA VAL GLU ASN ALA VAL ALA ARG VAL ALA SEQRES 2 A 285 ASP THR ILE SER SER GLY PRO SER ASN SER GLN ALA VAL SEQRES 3 A 285 PRO ALA LEU THR ALA VAL GLU THR GLY HIS THR SER GLN SEQRES 4 A 285 VAL THR PRO SER ASP THR ILE GLN THR ARG HIS VAL ARG SEQRES 5 A 285 ASN TYR HIS SER ARG SER GLU SER SER ILE GLU ASN PHE SEQRES 6 A 285 LEU CYS ARG SER ALA CYS VAL TYR MET GLY GLU TYR HIS SEQRES 7 A 285 THR THR ASN THR ASP THR SER LYS LEU PHE ALA SER TRP SEQRES 8 A 285 THR ILE ASN ALA ARG ARG MET VAL GLN MET ARG ARG LYS SEQRES 9 A 285 LEU GLU LEU PHE THR TYR VAL ARG PHE ASP MET GLU VAL SEQRES 10 A 285 THR PHE VAL ILE THR SER LYS GLN ASP GLN GLY THR GLN SEQRES 11 A 285 LEU GLY GLN ASP MET PRO PRO LEU THR HIS GLN ILE MET SEQRES 12 A 285 TYR ILE PRO PRO GLY GLY PRO ILE PRO LYS SER VAL THR SEQRES 13 A 285 ASP TYR THR TRP GLN THR SER THR ASN PRO SER ILE PHE SEQRES 14 A 285 TRP THR GLU GLY ASN ALA PRO PRO ARG MET SER ILE PRO SEQRES 15 A 285 PHE ILE SER ILE GLY ASN ALA TYR SER ASN PHE TYR ASP SEQRES 16 A 285 GLY TRP SER HIS PHE SER GLN ASN GLY VAL TYR GLY TYR SEQRES 17 A 285 ASN THR LEU ASN HIS MET GLY GLN ILE TYR VAL ARG HIS SEQRES 18 A 285 VAL ASN GLY SER SER PRO LEU PRO MET THR SER THR VAL SEQRES 19 A 285 ARG MET TYR PHE LYS PRO LYS HIS VAL LYS VAL TRP VAL SEQRES 20 A 285 PRO ARG PRO PRO ARG LEU CYS GLN TYR LYS ASN ALA SER SEQRES 21 A 285 THR VAL ASN PHE THR PRO THR ASN ILE THR GLU LYS ARG SEQRES 22 A 285 GLN SER ILE ASN TYR ILE PRO GLU THR VAL LYS PRO SEQRES 1 B 251 ASP ARG VAL ARG SER ILE THR LEU GLY ASN SER THR ILE SEQRES 2 B 251 THR THR GLN GLU SER ALA ASN VAL VAL VAL ALA TYR GLY SEQRES 3 B 251 ARG TRP PRO GLU TYR LEU LYS ASP ASN GLU ALA THR ALA SEQRES 4 B 251 GLU ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS ARG SEQRES 5 B 251 PHE TYR THR LEU GLU SER VAL THR TRP GLU ARG ASP SER SEQRES 6 B 251 PRO GLY TRP TRP TRP LYS PHE PRO ASP ALA LEU LYS ASP SEQRES 7 B 251 MET GLY LEU PHE GLY GLN ASN MET TYR TYR HIS TYR LEU SEQRES 8 B 251 GLY ARG ALA GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SEQRES 9 B 251 SER LYS PHE HIS GLN GLY CYS LEU MET VAL VAL CYS VAL SEQRES 10 B 251 PRO GLU ALA GLU MET GLY CYS SER GLN VAL ASP GLY THR SEQRES 11 B 251 VAL ASN GLU HIS SER LEU SER GLU GLY GLU THR ALA LYS SEQRES 12 B 251 LYS PHE ALA SER THR SER THR ASN GLY THR ASN THR VAL SEQRES 13 B 251 GLN SER ILE VAL THR ASN ALA GLY MET GLY VAL GLY VAL SEQRES 14 B 251 GLY ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN LEU SEQRES 15 B 251 ARG THR ASN ASN CYS ALA THR ILE VAL MET PRO TYR ILE SEQRES 16 B 251 ASN ASN VAL PRO MET ASP ASN MET PHE ARG HIS HIS ASN SEQRES 17 B 251 PHE THR LEU MET ILE ILE PRO PHE VAL PRO LEU ASP TYR SEQRES 18 B 251 SER SER ASP SER SER THR TYR VAL PRO ILE THR VAL THR SEQRES 19 B 251 VAL ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG LEU SEQRES 20 B 251 ALA THR SER LEU SEQRES 1 C 238 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 238 LEU THR SER ASP ASP PHE GLN SER PRO SER ALA MET PRO SEQRES 3 C 238 GLN PHE ASP VAL THR PRO GLU LEU ASN ILE PRO GLY GLU SEQRES 4 C 238 VAL GLN ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 238 VAL PRO VAL ASN ASN VAL GLU GLY LYS LEU ASP THR MET SEQRES 6 C 238 GLU ILE TYR ARG ILE PRO VAL GLN SER GLY ASN HIS GLN SEQRES 7 C 238 SER SER GLN VAL PHE GLY PHE GLN VAL GLN PRO GLY LEU SEQRES 8 C 238 ASP ASN VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR ALA HIS TRP SER GLY SER ILE LYS LEU THR SEQRES 10 C 238 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 238 LEU LEU ALA TYR ALA PRO PRO GLY ALA ASN ALA PRO LYS SEQRES 12 C 238 SER ARG LYS ASP ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 238 ASP VAL GLY LEU GLN SER SER CYS VAL LEU CYS ILE PRO SEQRES 14 C 238 TRP ILE SER GLN THR HIS TYR ARG LEU VAL GLN GLN ASP SEQRES 15 C 238 GLU TYR THR SER ALA GLY ASN VAL THR CYS TRP TYR GLN SEQRES 16 C 238 THR GLY ILE VAL VAL PRO ALA GLY THR PRO THR SER CYS SEQRES 17 C 238 SER ILE MET CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU LYS ASP THR PRO PHE ILE GLU GLN SER SEQRES 19 C 238 ALA LEU LEU GLN SEQRES 1 D 69 MET GLY ALA GLN VAL SER THR GLN LYS THR GLY ALA HIS SEQRES 2 D 69 GLU THR GLY LEU ASN ALA SER GLY ARG SER ILE ILE HIS SEQRES 3 D 69 TYR THR ASN ILE ASN TYR TYR LYS ASP ALA ALA SER ASN SEQRES 4 D 69 SER ALA ASN ARG GLN ASP PHE SER GLN ASP PRO GLY LYS SEQRES 5 D 69 PHE THR GLU PRO VAL LYS ASP ILE MET VAL LYS SER LEU SEQRES 6 D 69 PRO ALA LEU ASN HET SPH A 301 21 HETNAM SPH SPHINGOSINE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 ALA A 33 GLY A 37 5 5 HELIX 2 AA2 THR A 43 THR A 47 5 5 HELIX 3 AA3 SER A 63 CYS A 69 1 7 HELIX 4 AA4 MET A 100 GLU A 108 1 9 HELIX 5 AA5 ASP A 159 THR A 164 5 6 HELIX 6 AA6 GLY A 209 LEU A 213 5 5 HELIX 7 AA7 LYS B 43 ALA B 47 5 5 HELIX 8 AA8 MET B 89 TYR B 98 1 10 HELIX 9 AA9 ASN B 142 SER B 147 1 6 HELIX 10 AB1 ILE B 169 ALA B 173 5 5 HELIX 11 AB2 GLY B 178 PHE B 185 5 8 HELIX 12 AB3 LEU C 43 GLU C 48 1 6 HELIX 13 AB4 THR C 64 ARG C 69 5 6 HELIX 14 AB5 THR C 98 ASN C 105 1 8 HELIX 15 AB6 SER C 144 MET C 149 1 6 HELIX 16 AB7 ASP D 35 ASN D 39 5 5 HELIX 17 AB8 PRO D 50 GLU D 55 1 6 SHEET 1 AA1 3 VAL A 4 VAL A 7 0 SHEET 2 AA1 3 ALA D 3 THR D 7 1 O VAL D 5 N VAL A 7 SHEET 3 AA1 3 HIS D 26 ASN D 29 -1 O ASN D 29 N GLN D 4 SHEET 1 AA2 5 LEU A 31 THR A 32 0 SHEET 2 AA2 5 SER C 163 ILE C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA2 5 ILE C 114 PHE C 120 -1 N ILE C 114 O ILE C 168 SHEET 4 AA2 5 CYS C 208 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA2 5 SER C 51 VAL C 52 -1 N SER C 51 O VAL C 214 SHEET 1 AA3 5 LEU A 31 THR A 32 0 SHEET 2 AA3 5 SER C 163 ILE C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA3 5 ILE C 114 PHE C 120 -1 N ILE C 114 O ILE C 168 SHEET 4 AA3 5 CYS C 208 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA3 5 ILE C 70 VAL C 72 -1 N VAL C 72 O CYS C 208 SHEET 1 AA4 4 ALA A 72 HIS A 80 0 SHEET 2 AA4 4 MET A 232 PRO A 250 -1 O SER A 234 N TYR A 79 SHEET 3 AA4 4 PHE A 110 GLN A 127 -1 N THR A 120 O TYR A 239 SHEET 4 AA4 4 TYR A 192 SER A 193 -1 O TYR A 192 N VAL A 113 SHEET 1 AA5 4 ARG A 180 ILE A 183 0 SHEET 2 AA5 4 PHE A 110 GLN A 127 -1 N VAL A 119 O MET A 181 SHEET 3 AA5 4 MET A 232 PRO A 250 -1 O TYR A 239 N THR A 120 SHEET 4 AA5 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 247 SHEET 1 AA6 4 PHE A 90 THR A 94 0 SHEET 2 AA6 4 GLN A 218 HIS A 223 -1 O VAL A 221 N ALA A 91 SHEET 3 AA6 4 THR A 141 ILE A 147 -1 N MET A 145 O TYR A 220 SHEET 4 AA6 4 SER A 169 THR A 173 -1 O TRP A 172 N HIS A 142 SHEET 1 AA7 2 ARG B 14 LEU B 18 0 SHEET 2 AA7 2 SER B 21 THR B 25 -1 O SER B 21 N LEU B 18 SHEET 1 AA8 5 VAL B 32 VAL B 33 0 SHEET 2 AA8 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA8 5 HIS B 99 GLN B 111 -1 N ILE B 108 O ILE B 200 SHEET 4 AA8 5 PRO B 240 LEU B 255 -1 O MET B 248 N GLY B 105 SHEET 5 AA8 5 TYR B 64 THR B 65 -1 N TYR B 64 O VAL B 245 SHEET 1 AA9 5 VAL B 32 VAL B 33 0 SHEET 2 AA9 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA9 5 HIS B 99 GLN B 111 -1 N ILE B 108 O ILE B 200 SHEET 4 AA9 5 PRO B 240 LEU B 255 -1 O MET B 248 N GLY B 105 SHEET 5 AA9 5 VAL B 69 THR B 70 -1 N VAL B 69 O ILE B 241 SHEET 1 AB1 5 LYS B 153 LYS B 154 0 SHEET 2 AB1 5 TRP B 78 PHE B 82 -1 N TRP B 79 O LYS B 153 SHEET 3 AB1 5 PHE B 219 ASP B 230 -1 O PHE B 219 N PHE B 82 SHEET 4 AB1 5 GLN B 119 PRO B 128 -1 N VAL B 125 O MET B 222 SHEET 5 AB1 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AB2 4 GLN C 81 GLN C 86 0 SHEET 2 AB2 4 ASN C 189 TYR C 194 -1 O VAL C 190 N PHE C 85 SHEET 3 AB2 4 LYS C 129 ALA C 135 -1 N ALA C 133 O THR C 191 SHEET 4 AB2 4 THR C 152 ASP C 157 -1 O THR C 152 N TYR C 134 SHEET 1 AB3 3 ARG C 177 LEU C 178 0 SHEET 2 AB3 3 TYR C 107 SER C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB3 3 SER C 221 LEU C 225 -1 O ARG C 223 N HIS C 109 CISPEP 1 PHE B 82 PRO B 83 0 -4.53 SITE 1 AC1 10 ILE A 95 ALA A 97 MET A 117 TYR A 146 SITE 2 AC1 10 PRO A 168 MET A 181 TYR A 192 ASN A 194 SITE 3 AC1 10 MET A 216 ILE A 219 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000