HEADER VIRUS 13-NOV-19 6LAP TITLE CRYO-EM STRUCTURE OF ECHOVIRUS 11 A-PARTICLE AT PH 7.4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CAPSID PROTEIN VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: CAPSID PROTEIN VP3; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 3 ORGANISM_TAXID: 12078; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 6 ORGANISM_TAXID: 12078; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 9 ORGANISM_TAXID: 12078 KEYWDS VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR S.LIU,F.G.GAO REVDAT 2 27-MAR-24 6LAP 1 REMARK REVDAT 1 07-OCT-20 6LAP 0 JRNL AUTH S.NIU,C.LIU,C.LIU,S.LIU,Y.SONG,Y.ZHANG,W.TIAN,X.ZHAO,P.WANG, JRNL AUTH 2 F.G.GAO JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF ECHOVIRUS 11 INFECTION BY JRNL TITL 2 USING THE DUAL-RECEPTOR SYSTEM OF CD55 AND FCRN. JRNL REF CHIN.SCI.BULL. 2020 JRNL REFN ISSN 1001-6538 JRNL DOI 10.1360/TB-2019-0786 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.490 REMARK 3 NUMBER OF PARTICLES : 54625 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6LAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014478. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ECHOVIRUS E11 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 102.50 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.504725 0.257645 0.823937 -118.48647 REMARK 350 BIOMT2 2 0.363673 0.802145 -0.473609 62.20587 REMARK 350 BIOMT3 2 -0.782940 0.538686 0.311164 188.49740 REMARK 350 BIOMT1 3 -0.296647 0.780552 0.550218 -6.95259 REMARK 350 BIOMT2 3 0.846081 0.482009 -0.227629 -20.26037 REMARK 350 BIOMT3 3 -0.442886 0.398003 -0.803396 373.42819 REMARK 350 BIOMT1 4 -0.296647 0.846081 -0.442886 180.46561 REMARK 350 BIOMT2 4 0.780552 0.482009 0.398003 -133.43318 REMARK 350 BIOMT3 4 0.550218 -0.227629 -0.803396 299.22430 REMARK 350 BIOMT1 5 0.504725 0.363673 -0.782940 184.76255 REMARK 350 BIOMT2 5 0.257645 0.802145 0.538686 -120.91158 REMARK 350 BIOMT3 5 0.823937 -0.473609 0.311164 68.43299 REMARK 350 BIOMT1 6 -0.818421 0.470669 0.329632 216.43856 REMARK 350 BIOMT2 6 0.470669 0.220018 0.854437 -103.05545 REMARK 350 BIOMT3 6 0.329632 0.854437 -0.401597 27.92307 REMARK 350 BIOMT1 7 -0.499990 0.344251 -0.794670 404.82360 REMARK 350 BIOMT2 7 -0.351399 0.758025 0.549469 15.92215 REMARK 350 BIOMT3 7 0.791536 0.553976 -0.258035 -33.68285 REMARK 350 BIOMT1 8 0.495017 -0.280758 -0.822273 335.68675 REMARK 350 BIOMT2 8 -0.331888 0.813501 -0.477563 208.28539 REMARK 350 BIOMT3 8 0.803000 0.509304 0.309516 -141.64750 REMARK 350 BIOMT1 9 0.791533 -0.540617 0.284970 104.57280 REMARK 350 BIOMT2 9 0.502239 0.309780 -0.807336 208.19480 REMARK 350 BIOMT3 9 0.348182 0.782157 0.516721 -146.76740 REMARK 350 BIOMT1 10 -0.020216 -0.076210 0.996887 30.87336 REMARK 350 BIOMT2 10 0.998247 -0.057013 0.015885 15.77558 REMARK 350 BIOMT3 10 0.055625 0.995461 0.077229 -41.96702 REMARK 350 BIOMT1 11 -0.449254 0.360135 -0.817603 395.23217 REMARK 350 BIOMT2 11 0.360135 -0.764507 -0.534633 417.82134 REMARK 350 BIOMT3 11 -0.817603 -0.534633 0.213761 450.27314 REMARK 350 BIOMT1 12 0.544355 -0.267299 -0.795128 316.74920 REMARK 350 BIOMT2 12 0.322323 -0.808458 0.492447 226.81653 REMARK 350 BIOMT3 12 -0.774458 -0.524354 -0.353931 554.18403 REMARK 350 BIOMT1 13 0.800078 -0.502486 0.327694 85.74333 REMARK 350 BIOMT2 13 -0.516886 -0.300181 0.801698 231.15966 REMARK 350 BIOMT3 13 -0.304475 -0.810801 -0.499896 546.61375 REMARK 350 BIOMT1 14 -0.035486 -0.020407 0.999162 21.45682 REMARK 350 BIOMT2 14 -0.997734 0.057902 -0.034253 424.84867 REMARK 350 BIOMT3 14 -0.057154 -0.998114 -0.022415 438.02417 REMARK 350 BIOMT1 15 -0.807616 0.512722 0.291330 212.73144 REMARK 350 BIOMT2 15 -0.455706 -0.229067 -0.860151 540.21193 REMARK 350 BIOMT3 15 -0.374285 -0.827432 0.418649 378.48240 REMARK 350 BIOMT1 16 0.267675 -0.830804 0.487970 238.05248 REMARK 350 BIOMT2 16 -0.830804 -0.455511 -0.319804 559.62636 REMARK 350 BIOMT3 16 0.487970 -0.319804 -0.812164 334.37810 REMARK 350 BIOMT1 17 -0.549090 -0.334597 0.765862 246.63688 REMARK 350 BIOMT2 17 -0.334597 -0.751712 -0.568307 569.44768 REMARK 350 BIOMT3 17 0.765862 -0.568307 0.300802 103.57573 REMARK 350 BIOMT1 18 -0.998447 0.002693 -0.055639 435.24571 REMARK 350 BIOMT2 18 0.002693 -0.995329 -0.096506 455.20756 REMARK 350 BIOMT3 18 -0.055639 -0.096506 0.993776 34.17987 REMARK 350 BIOMT1 19 -0.459400 -0.285056 -0.841246 543.22798 REMARK 350 BIOMT2 19 -0.285056 -0.849691 0.443586 374.78195 REMARK 350 BIOMT3 19 -0.841246 0.443586 0.309091 222.09324 REMARK 350 BIOMT1 20 0.323106 -0.800186 -0.505277 421.35587 REMARK 350 BIOMT2 20 -0.800186 -0.516065 0.305580 439.31631 REMARK 350 BIOMT3 20 -0.505277 0.305580 -0.807041 407.62595 REMARK 350 BIOMT1 21 0.815786 0.451398 0.361570 -132.99269 REMARK 350 BIOMT2 21 0.525826 -0.318556 -0.788688 336.74893 REMARK 350 BIOMT3 21 -0.240832 0.833524 -0.497230 173.10609 REMARK 350 BIOMT1 22 0.292821 0.767043 0.570878 -133.41759 REMARK 350 BIOMT2 22 0.767043 -0.544907 0.338707 105.96393 REMARK 350 BIOMT3 22 0.570878 0.338707 -0.747915 159.76488 REMARK 350 BIOMT1 23 -0.020216 0.998247 0.055625 -12.78940 REMARK 350 BIOMT2 23 -0.076210 -0.057013 0.995461 45.02877 REMARK 350 BIOMT3 23 0.996887 0.015885 0.077229 -27.78679 REMARK 350 BIOMT1 24 0.309282 0.825495 -0.472127 62.18783 REMARK 350 BIOMT2 24 -0.838584 0.470873 0.273961 238.15376 REMARK 350 BIOMT3 24 0.448465 0.311187 0.837879 -130.35889 REMARK 350 BIOMT1 25 0.825959 0.487523 -0.283042 -12.10189 REMARK 350 BIOMT2 25 -0.466506 0.309231 -0.828703 418.44674 REMARK 350 BIOMT3 25 -0.316487 0.816515 0.482844 -6.20026 REMARK 350 BIOMT1 26 -0.336012 0.792220 0.509395 7.15198 REMARK 350 BIOMT2 26 -0.840259 -0.496482 0.217878 461.36434 REMARK 350 BIOMT3 26 0.425513 -0.354814 0.832494 21.19741 REMARK 350 BIOMT1 27 -0.280310 0.823308 -0.493550 192.26521 REMARK 350 BIOMT2 27 -0.775242 -0.497371 -0.389386 571.10902 REMARK 350 BIOMT3 27 -0.566062 0.273472 0.777681 105.63130 REMARK 350 BIOMT1 28 0.544355 0.322323 -0.774458 183.65988 REMARK 350 BIOMT2 28 -0.267299 -0.808458 -0.524354 558.62707 REMARK 350 BIOMT3 28 -0.795128 0.492447 -0.353931 336.30430 REMARK 350 BIOMT1 29 0.998324 -0.018389 0.054876 -6.77173 REMARK 350 BIOMT2 29 -0.018389 -0.999831 -0.000505 441.16812 REMARK 350 BIOMT3 29 0.054876 -0.000505 -0.998493 394.43416 REMARK 350 BIOMT1 30 0.454227 0.272023 0.848340 -115.85961 REMARK 350 BIOMT2 30 -0.372498 -0.807019 0.458220 381.05644 REMARK 350 BIOMT3 30 0.809273 -0.524141 -0.265242 199.68739 REMARK 350 BIOMT1 31 -0.499552 -0.244612 -0.831031 540.84131 REMARK 350 BIOMT2 31 0.293881 0.854565 -0.428197 56.34798 REMARK 350 BIOMT3 31 0.814912 -0.458131 -0.355013 202.29628 REMARK 350 BIOMT1 32 0.309552 -0.772586 -0.554336 428.16795 REMARK 350 BIOMT2 32 0.794364 0.530538 -0.295830 -6.02804 REMARK 350 BIOMT3 32 0.522650 -0.348770 0.777944 10.32276 REMARK 350 BIOMT1 33 0.309282 -0.838584 0.448465 238.93990 REMARK 350 BIOMT2 33 0.825495 0.470873 0.311187 -122.90996 REMARK 350 BIOMT3 33 -0.472127 0.273961 0.837879 73.34060 REMARK 350 BIOMT1 34 -0.499990 -0.351399 0.791536 234.66390 REMARK 350 BIOMT2 34 0.344251 0.758025 0.553976 -132.77093 REMARK 350 BIOMT3 34 -0.794671 0.549469 -0.258035 304.26129 REMARK 350 BIOMT1 35 -0.999877 0.015696 0.000763 421.24923 REMARK 350 BIOMT2 35 0.015696 0.995159 0.097011 -21.98343 REMARK 350 BIOMT3 35 0.000763 0.097011 -0.995283 383.96027 REMARK 350 BIOMT1 36 0.019778 -0.999007 -0.039934 434.72261 REMARK 350 BIOMT2 36 0.020552 -0.039527 0.999007 19.93099 REMARK 350 BIOMT3 36 -0.999593 -0.020579 0.019749 415.97454 REMARK 350 BIOMT1 37 -0.322064 -0.817764 0.477008 362.70764 REMARK 350 BIOMT2 37 -0.786164 0.511739 0.346509 203.34733 REMARK 350 BIOMT3 37 -0.527466 -0.263409 -0.807710 536.85537 REMARK 350 BIOMT1 38 -0.833421 -0.481986 0.270368 439.91282 REMARK 350 BIOMT2 38 -0.481986 0.394597 -0.782293 393.64636 REMARK 350 BIOMT3 38 0.270368 -0.782293 -0.561176 430.71619 REMARK 350 BIOMT1 39 -0.807616 -0.455706 -0.374285 559.64321 REMARK 350 BIOMT2 39 0.512722 -0.229067 -0.827432 327.84129 REMARK 350 BIOMT3 39 0.291330 -0.860151 0.418649 244.23775 REMARK 350 BIOMT1 40 -0.280310 -0.775242 -0.566062 556.43548 REMARK 350 BIOMT2 40 0.823308 -0.497371 0.273472 96.87249 REMARK 350 BIOMT3 40 -0.493550 -0.389386 0.777681 235.12691 REMARK 350 BIOMT1 41 0.815786 0.525826 -0.240832 -26.88843 REMARK 350 BIOMT2 41 0.451398 -0.318556 0.833524 23.01786 REMARK 350 BIOMT3 41 0.361570 -0.788688 -0.497230 399.74968 REMARK 350 BIOMT1 42 0.791533 0.502239 0.348182 -136.23472 REMARK 350 BIOMT2 42 -0.540617 0.309780 0.782157 106.83437 REMARK 350 BIOMT3 42 0.284970 -0.807336 0.516721 214.12084 REMARK 350 BIOMT1 43 0.309552 0.794364 0.522650 -133.14709 REMARK 350 BIOMT2 43 -0.772586 0.530538 -0.348770 337.59487 REMARK 350 BIOMT3 43 -0.554336 -0.295830 0.777944 227.53517 REMARK 350 BIOMT1 44 0.035924 0.998494 0.041464 -21.89254 REMARK 350 BIOMT2 44 0.076065 0.038638 -0.996354 396.39619 REMARK 350 BIOMT3 44 -0.996456 0.038947 -0.074562 421.45452 REMARK 350 BIOMT1 45 0.348794 0.832529 -0.430394 43.77892 REMARK 350 BIOMT2 45 0.832529 -0.486131 -0.265656 201.97690 REMARK 350 BIOMT3 45 -0.430394 -0.265656 -0.862663 527.88894 REMARK 350 BIOMT1 46 -0.499552 0.293881 0.814912 88.76506 REMARK 350 BIOMT2 46 -0.244612 0.854565 -0.458131 176.82124 REMARK 350 BIOMT3 46 -0.831031 -0.428197 -0.355013 545.40189 REMARK 350 BIOMT1 47 -0.783287 0.546010 -0.297212 319.84515 REMARK 350 BIOMT2 47 0.546010 0.375673 -0.748828 172.60685 REMARK 350 BIOMT3 47 -0.297212 -0.748828 -0.592387 550.31246 REMARK 350 BIOMT1 48 0.035924 0.076065 -0.996455 390.59527 REMARK 350 BIOMT2 48 0.998494 0.038638 0.038947 -9.87091 REMARK 350 BIOMT3 48 0.041464 -0.996354 -0.074562 427.28331 REMARK 350 BIOMT1 49 0.825959 -0.466506 -0.316487 203.24115 REMARK 350 BIOMT2 49 0.487523 0.309231 0.816515 -118.43398 REMARK 350 BIOMT3 49 -0.283042 -0.828703 0.482844 346.33654 REMARK 350 BIOMT1 50 0.495017 -0.331888 0.803000 16.69983 REMARK 350 BIOMT2 50 -0.280758 0.813501 0.509304 -3.05189 REMARK 350 BIOMT3 50 -0.822273 -0.477563 0.309516 419.33783 REMARK 350 BIOMT1 51 0.019778 0.020552 -0.999593 406.79776 REMARK 350 BIOMT2 51 -0.999007 -0.039527 -0.020579 443.63891 REMARK 350 BIOMT3 51 -0.039934 0.999007 0.019749 -10.76615 REMARK 350 BIOMT1 52 0.800078 -0.516886 -0.304475 217.31206 REMARK 350 BIOMT2 52 -0.502486 -0.300181 -0.810801 555.66975 REMARK 350 BIOMT3 52 0.327694 0.801698 -0.499896 59.83230 REMARK 350 BIOMT1 53 0.454227 -0.372498 0.809273 32.96762 REMARK 350 BIOMT2 53 0.272023 -0.807019 -0.524141 443.70064 REMARK 350 BIOMT3 53 0.848340 0.458220 -0.265242 -23.35381 REMARK 350 BIOMT1 54 -0.539820 0.254176 0.802489 108.52219 REMARK 350 BIOMT2 54 0.254176 -0.859608 0.443247 262.46908 REMARK 350 BIOMT3 54 0.802489 0.443247 0.399428 -145.36410 REMARK 350 BIOMT1 55 -0.808324 0.497094 -0.315452 339.56193 REMARK 350 BIOMT2 55 -0.531363 -0.385272 0.754466 262.43093 REMARK 350 BIOMT3 55 0.253506 0.777472 0.575562 -137.58451 REMARK 350 BIOMT1 56 -0.336012 -0.840259 0.425513 381.04882 REMARK 350 BIOMT2 56 0.792220 -0.496482 -0.354814 230.91424 REMARK 350 BIOMT3 56 0.509395 0.217878 0.832494 -121.81111 REMARK 350 BIOMT1 57 -0.808324 -0.531363 0.253506 448.80072 REMARK 350 BIOMT2 57 0.497094 -0.385272 0.777472 39.28128 REMARK 350 BIOMT3 57 -0.315452 0.754466 0.575562 -11.69130 REMARK 350 BIOMT1 58 -0.799704 -0.497931 -0.335468 559.30741 REMARK 350 BIOMT2 58 -0.497931 0.237843 0.833964 102.96765 REMARK 350 BIOMT3 58 -0.335468 0.833964 -0.438139 181.10964 REMARK 350 BIOMT1 59 -0.322064 -0.786164 -0.527466 559.85240 REMARK 350 BIOMT2 59 -0.817764 0.511739 -0.263409 333.96095 REMARK 350 BIOMT3 59 0.477008 0.346509 -0.807710 190.14736 REMARK 350 BIOMT1 60 -0.035486 -0.997734 -0.057154 449.68254 REMARK 350 BIOMT2 60 -0.020407 0.057902 -0.998114 413.03629 REMARK 350 BIOMT3 60 0.999162 -0.034253 -0.022415 2.93204 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 202 REMARK 465 SER A 203 REMARK 465 GLN A 204 REMARK 465 ASN A 205 REMARK 465 HIS C 175 REMARK 465 TYR C 176 REMARK 465 ARG C 177 REMARK 465 LEU C 178 REMARK 465 VAL C 179 REMARK 465 GLN C 180 REMARK 465 GLN C 181 REMARK 465 ASP C 182 REMARK 465 GLU C 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 283 N TYR C 184 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 86 -7.46 69.38 REMARK 500 THR A 131 -33.24 -148.48 REMARK 500 VAL A 249 86.23 58.99 REMARK 500 THR A 272 -176.89 -170.71 REMARK 500 LYS B 43 -76.20 -62.87 REMARK 500 ASP B 44 -41.43 -141.59 REMARK 500 VAL B 58 -65.43 -121.98 REMARK 500 PRO B 83 -157.78 -85.81 REMARK 500 ASP B 84 -5.96 84.87 REMARK 500 MET B 89 74.93 -101.38 REMARK 500 ASP B 138 62.97 -100.51 REMARK 500 SER B 232 -159.67 -138.74 REMARK 500 LEU C 2 81.58 58.96 REMARK 500 GLN C 27 51.78 -95.80 REMARK 500 ASN C 56 51.50 -93.18 REMARK 500 LYS C 61 32.28 -144.33 REMARK 500 GLN C 78 38.84 -81.68 REMARK 500 SER C 79 15.87 -149.39 REMARK 500 CYS C 121 61.78 -108.08 REMARK 500 ASP C 219 52.55 -91.06 REMARK 500 LEU C 224 72.70 64.36 REMARK 500 PRO C 229 42.20 -89.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 131 GLN A 132 -149.09 REMARK 500 LEU B 42 LYS B 43 -148.52 REMARK 500 SER B 232 SER B 233 -137.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0860 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ECHOVIRUS 11 A-PARTICLE AT PH 7.4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE VIRUS WAS ISOLATED FROM CHINA, AND THE GENEBANK: MN496161. DBREF 6LAP A 60 285 PDB 6LAP 6LAP 60 285 DBREF 6LAP B 12 256 PDB 6LAP 6LAP 12 256 DBREF 6LAP C 1 231 PDB 6LAP 6LAP 1 231 SEQRES 1 A 226 SER GLU SER SER ILE GLU ASN PHE LEU CYS ARG SER ALA SEQRES 2 A 226 CYS VAL TYR MET GLY GLU TYR HIS THR THR ASN THR ASP SEQRES 3 A 226 THR SER LYS LEU PHE ALA SER TRP THR ILE ASN ALA ARG SEQRES 4 A 226 ARG MET VAL GLN MET ARG ARG LYS LEU GLU LEU PHE THR SEQRES 5 A 226 TYR VAL ARG PHE ASP MET GLU VAL THR PHE VAL ILE THR SEQRES 6 A 226 SER LYS GLN ASP GLN GLY THR GLN LEU GLY GLN ASP MET SEQRES 7 A 226 PRO PRO LEU THR HIS GLN ILE MET TYR ILE PRO PRO GLY SEQRES 8 A 226 GLY PRO ILE PRO LYS SER VAL THR ASP TYR THR TRP GLN SEQRES 9 A 226 THR SER THR ASN PRO SER ILE PHE TRP THR GLU GLY ASN SEQRES 10 A 226 ALA PRO PRO ARG MET SER ILE PRO PHE ILE SER ILE GLY SEQRES 11 A 226 ASN ALA TYR SER ASN PHE TYR ASP GLY TRP SER HIS PHE SEQRES 12 A 226 SER GLN ASN GLY VAL TYR GLY TYR ASN THR LEU ASN HIS SEQRES 13 A 226 MET GLY GLN ILE TYR VAL ARG HIS VAL ASN GLY SER SER SEQRES 14 A 226 PRO LEU PRO MET THR SER THR VAL ARG MET TYR PHE LYS SEQRES 15 A 226 PRO LYS HIS VAL LYS VAL TRP VAL PRO ARG PRO PRO ARG SEQRES 16 A 226 LEU CYS GLN TYR LYS ASN ALA SER THR VAL ASN PHE THR SEQRES 17 A 226 PRO THR ASN ILE THR GLU LYS ARG GLN SER ILE ASN TYR SEQRES 18 A 226 ILE PRO GLU THR VAL SEQRES 1 B 245 ARG VAL ARG SER ILE THR LEU GLY ASN SER THR ILE THR SEQRES 2 B 245 THR GLN GLU SER ALA ASN VAL VAL VAL ALA TYR GLY ARG SEQRES 3 B 245 TRP PRO GLU TYR LEU LYS ASP ASN GLU ALA THR ALA GLU SEQRES 4 B 245 ASP GLN PRO THR GLN PRO ASP VAL ALA THR CYS ARG PHE SEQRES 5 B 245 TYR THR LEU GLU SER VAL THR TRP GLU ARG ASP SER PRO SEQRES 6 B 245 GLY TRP TRP TRP LYS PHE PRO ASP ALA LEU LYS ASP MET SEQRES 7 B 245 GLY LEU PHE GLY GLN ASN MET TYR TYR HIS TYR LEU GLY SEQRES 8 B 245 ARG ALA GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SER SEQRES 9 B 245 LYS PHE HIS GLN GLY CYS LEU MET VAL VAL CYS VAL PRO SEQRES 10 B 245 GLU ALA GLU MET GLY CYS SER GLN VAL ASP GLY THR VAL SEQRES 11 B 245 ASN GLU HIS SER LEU SER GLU GLY GLU THR ALA LYS LYS SEQRES 12 B 245 PHE ALA SER THR SER THR ASN GLY THR ASN THR VAL GLN SEQRES 13 B 245 SER ILE VAL THR ASN ALA GLY MET GLY VAL GLY VAL GLY SEQRES 14 B 245 ASN LEU THR ILE PHE PRO HIS GLN TRP ILE ASN LEU ARG SEQRES 15 B 245 THR ASN ASN CYS ALA THR ILE VAL MET PRO TYR ILE ASN SEQRES 16 B 245 ASN VAL PRO MET ASP ASN MET PHE ARG HIS HIS ASN PHE SEQRES 17 B 245 THR LEU MET ILE ILE PRO PHE VAL PRO LEU ASP TYR SER SEQRES 18 B 245 SER ASP SER SER THR TYR VAL PRO ILE THR VAL THR VAL SEQRES 19 B 245 ALA PRO MET CYS ALA GLU TYR ASN GLY LEU ARG SEQRES 1 C 231 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 231 LEU THR SER ASP ASP PHE GLN SER PRO SER ALA MET PRO SEQRES 3 C 231 GLN PHE ASP VAL THR PRO GLU LEU ASN ILE PRO GLY GLU SEQRES 4 C 231 VAL GLN ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 231 VAL PRO VAL ASN ASN VAL GLU GLY LYS LEU ASP THR MET SEQRES 6 C 231 GLU ILE TYR ARG ILE PRO VAL GLN SER GLY ASN HIS GLN SEQRES 7 C 231 SER SER GLN VAL PHE GLY PHE GLN VAL GLN PRO GLY LEU SEQRES 8 C 231 ASP ASN VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 231 ASN TYR TYR ALA HIS TRP SER GLY SER ILE LYS LEU THR SEQRES 10 C 231 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 231 LEU LEU ALA TYR ALA PRO PRO GLY ALA ASN ALA PRO LYS SEQRES 12 C 231 SER ARG LYS ASP ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 231 ASP VAL GLY LEU GLN SER SER CYS VAL LEU CYS ILE PRO SEQRES 14 C 231 TRP ILE SER GLN THR HIS TYR ARG LEU VAL GLN GLN ASP SEQRES 15 C 231 GLU TYR THR SER ALA GLY ASN VAL THR CYS TRP TYR GLN SEQRES 16 C 231 THR GLY ILE VAL VAL PRO ALA GLY THR PRO THR SER CYS SEQRES 17 C 231 SER ILE MET CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 231 VAL ARG LEU LEU LYS ASP THR PRO PHE ILE HELIX 1 AA1 SER A 63 CYS A 69 1 7 HELIX 2 AA2 MET A 100 GLU A 108 1 9 HELIX 3 AA3 ASP A 159 THR A 164 5 6 HELIX 4 AA4 ASN A 211 HIS A 215 5 5 HELIX 5 AA5 MET B 89 HIS B 99 1 11 HELIX 6 AA6 GLY B 178 PHE B 185 5 8 HELIX 7 AA7 LEU C 43 GLU C 48 1 6 HELIX 8 AA8 THR C 64 ARG C 69 5 6 HELIX 9 AA9 THR C 98 ASN C 105 1 8 HELIX 10 AB1 SER C 144 LEU C 150 1 7 SHEET 1 AA1 4 ALA A 72 HIS A 80 0 SHEET 2 AA1 4 MET A 232 PRO A 250 -1 O SER A 234 N TYR A 79 SHEET 3 AA1 4 PHE A 110 GLN A 127 -1 N THR A 120 O TYR A 239 SHEET 4 AA1 4 TYR A 192 SER A 193 -1 O TYR A 192 N VAL A 113 SHEET 1 AA2 4 ARG A 180 ILE A 183 0 SHEET 2 AA2 4 PHE A 110 GLN A 127 -1 N MET A 117 O ILE A 183 SHEET 3 AA2 4 MET A 232 PRO A 250 -1 O TYR A 239 N THR A 120 SHEET 4 AA2 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 247 SHEET 1 AA3 4 ALA A 91 THR A 94 0 SHEET 2 AA3 4 GLN A 218 HIS A 223 -1 O VAL A 221 N ALA A 91 SHEET 3 AA3 4 THR A 141 ILE A 147 -1 N MET A 145 O TYR A 220 SHEET 4 AA3 4 SER A 169 THR A 173 -1 O TRP A 172 N HIS A 142 SHEET 1 AA4 2 ARG B 14 LEU B 18 0 SHEET 2 AA4 2 SER B 21 THR B 25 -1 O ILE B 23 N ILE B 16 SHEET 1 AA5 5 VAL B 31 VAL B 33 0 SHEET 2 AA5 5 CYS B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA5 5 GLY B 102 CYS B 112 -1 N ILE B 108 O ILE B 200 SHEET 4 AA5 5 VAL B 239 ASN B 253 -1 O MET B 248 N GLY B 105 SHEET 5 AA5 5 TYR B 64 THR B 65 -1 N TYR B 64 O VAL B 245 SHEET 1 AA6 3 PRO B 53 THR B 54 0 SHEET 2 AA6 3 VAL B 239 ASN B 253 -1 O TYR B 252 N THR B 54 SHEET 3 AA6 3 VAL B 69 TRP B 71 -1 N TRP B 71 O VAL B 239 SHEET 1 AA7 5 LYS B 153 LYS B 154 0 SHEET 2 AA7 5 TRP B 78 PHE B 82 -1 N TRP B 79 O LYS B 153 SHEET 3 AA7 5 PHE B 219 ASP B 230 -1 O PHE B 219 N PHE B 82 SHEET 4 AA7 5 GLN B 119 PRO B 128 -1 N VAL B 127 O THR B 220 SHEET 5 AA7 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AA8 4 SER C 51 VAL C 52 0 SHEET 2 AA8 4 CYS C 208 ALA C 216 -1 O VAL C 214 N SER C 51 SHEET 3 AA8 4 TYR C 107 PHE C 120 -1 N LYS C 115 O SER C 215 SHEET 4 AA8 4 SER C 163 ILE C 171 -1 O ILE C 168 N ILE C 114 SHEET 1 AA9 4 ILE C 70 VAL C 72 0 SHEET 2 AA9 4 CYS C 208 ALA C 216 -1 O CYS C 208 N VAL C 72 SHEET 3 AA9 4 TYR C 107 PHE C 120 -1 N LYS C 115 O SER C 215 SHEET 4 AA9 4 SER C 221 LEU C 225 -1 O SER C 221 N SER C 111 SHEET 1 AB1 4 GLN C 81 GLN C 86 0 SHEET 2 AB1 4 ASN C 189 TYR C 194 -1 O CYS C 192 N VAL C 82 SHEET 3 AB1 4 LYS C 129 ALA C 135 -1 N ALA C 133 O THR C 191 SHEET 4 AB1 4 THR C 152 ASP C 157 -1 O ILE C 154 N LEU C 132 CISPEP 1 PHE B 82 PRO B 83 0 -2.26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000